A-AFFY-192 - Affymetrix GeneChip Zebrafish 1.1 ST Array

Organism
Danio rerio
Description
The csv files were produced to provide basic annotation assignments, mainly gene names, accessions, and descriptions. The assignments were based on inputs at array design using publicly available descriptions. When the full NETAFFX annotations are available the current assignments should be treated as obsolescent. The Zebrafish design was based on annotations associated with the (Zv9/Sanger Institute) genome assembly. Sequence identifiers with descriptions were merged using the following sources: * UCSC Genome Bioinformatics Site
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, Cline MS, Goldman M, Barber GP, Clawson H, Coelho A, Diekhans M, Dreszer TR, Giardine BM, Harte RA, Hillman-Jackson J, Hsu F, Kirkup V, Kuhn RM, Learned K, Li CH, Meyer LR, Pohl A, Raney BJ, Rosenbloom KR, Smith KE, Haussler D, Kent WJ. The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 2010 Oct 18. * Computational Biology and Functional Genomics Laboratory
The Gene Index Databases, Dana Farber Cancer Institute, Boston, MA 02115 (URL:
) [09,2011] * Ensembl
Paul Flicek, M. Ridwan Amode, Daniel Barrell, Kathryn Beal, Simon Brent, Yuan Chen, Peter Clapham, Guy Coates, Susan Fairley, Stephen Fitzgerald, Leo Gordon, Maurice Hendrix, Thibaut Hourlier, Nathan Johnson, Andreas Kahari, Damian Keefe, Stephen Keenan, Rhoda Kinsella, Felix Kokocinski, Eugene Kulesha, Pontus Larsson, Ian Longden, William McLaren, Bert Overduin, Bethan Pritchard, Harpreet Singh Riat, Daniel Rios, Graham R. S. Ritchie, Magali Ruffier, Michael Schuster, Daniel Sobral, Giulietta Spudich, Y. Amy Tang, Stephen Trevanion, Jana Vandrovcova, Albert J. Vilella, Simon White, Steven P. Wilder, Amonida Zadissa, Jorge Zamora, Bronwen L. Aken, Ewan Birney, Fiona Cunningham, Ian Dunham, Richard Durbin, Xose M. Fernandez-Suarez, Javier Herrero, Tim J. P. Hubbard, Anne Parker, Glenn Proctor, Jan Vogel and Stephen M. J. Searle Ensembl 2011 Nucleic Acids Research 2011 39 Database issue:D800-D806 * The National Center for Biotechnology Information (NCBI)
Geer LY, Marchler-Bauer A, Geer RC, Han L, He J, He S, Liu C, Shi W, Bryant SH. The NCBI BioSystems database. Nucleic Acids Res. 2010 Jan; 38(Database issue):D492-6. (Epub 2009 Oct 23)
Provider
(Tessa Pronk)tessa.pronk@rivm.nl
Links
Experiment E-MTAB-1476
Files
Array DesignA-AFFY-192.adf.txt