Accession Title Type Organism Assays Release Date Processed Data Raw Data Present in Atlas ArrayExpress URL E-MTAB-1821 Transcription profiling by array of mouse postnatal myocardium collected 4 weeks after sham or TAC surgery from both tamoxifen-treated Hand2f/f (wild type) and MCM-Hand2f/f (knock out) mice to identify Hand2 target genes transcription profiling by array Mus musculus 12 2013-10-02 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1821/E-MTAB-1821.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1821/ E-MTAB-1866 Methylation profiling by array of subcutaneous fat derived from 856 TwinsUK participants methylation profiling by array Homo sapiens 648 2013-10-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1866/E-MTAB-1866.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1866/E-MTAB-1866.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1866/ E-MTAB-1858 Transcription profiling by array of xenografted tumors derived from human ovarian cell line model A2780 and its cisplatin resistant variant A2780cis transcription profiling by array Homo sapiens 20 2013-10-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1858/E-MTAB-1858.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1858/ E-MTAB-1852 Transcription profiling by array of human glioma samples of different tumour types and grades to identify gene signatures associated with these categories transcription profiling by array Homo sapiens 42 2013-10-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1852/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1852/ E-MTAB-1846 RNA-seq of coding and non-coding rRNA-depleted total RNA from platelets of three individuals to identif genes expressed in unstimulated circulating platelets RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 3 2013-10-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1846/ E-MTAB-1722 Transcription profiling by array of liver samples from FXR+/+ (wt) and liver-specific FXR KO (lKO) mice transcription profiling by array Mus musculus 6 2013-10-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1722/E-MTAB-1722.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1722/ E-MTAB-1327 Microrna expression (Agilent McroRNA Array) microRNA profiling by array Homo sapiens 3 2013-10-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1327/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1327/ E-MEXP-3883 Transcription profiling by array of mouse neural progenitor cells isolated from forebrains of E13.5 dpc mouse embryos with wild-type Miz1 or homozygous for Miz1-delta-POZ transcription profiling by array Mus musculus 8 2013-10-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3883/E-MEXP-3883.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3883/ E-MEXP-3878 Transcription profiling by array of Miz1 POZ-domain knock-out mice brain samples transcription profiling by array Mus musculus 4 2013-10-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3878/E-MEXP-3878.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3878/ E-MEXP-3671 Transcription profiling by array of lung tissue from dogs with spontaneous canine idiopathic pulmonary fibrosis and normal controls transcription profiling by array Canis familiaris 2 2013-10-01 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3671/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3671/E-MEXP-3671.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3671/ E-MTAB-1656 DNA:RNA immunoprecipitation and tiling microarray (DRIP-chip) to obtain the genome-wide distribution of DNA:RNA hybrid prone loci in Saccharomyces cerevisiae ChIP-chip by array Saccharomyces cerevisiae 10 2013-09-30 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1656/E-MTAB-1656.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1656/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1656/ E-MEXP-3981 Transcription profiling by array of human tubular epithelial cells treated with cisplatin in the presence or absence of endothelial progenitor cells-derived extracellular vesicles transcription profiling by array Homo sapiens 2 2013-09-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3981/E-MEXP-3981.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3981/ E-MEXP-3885 Transcription profiling by array of Arabidopsis thaliana wild type and atglr3.3 mutant seedlings treated with CK buffer containing GSH and Glu transcription profiling by array Arabidopsis thaliana 12 2013-09-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3885/E-MEXP-3885.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3885/ E-MTAB-1130 Transcription profiling by high throughput sequencing of rhesus macaques vaccinated with two regimens to define correlates of protection against repeated low dose simian immunodeficiency virus challenges RNA-seq of coding RNA Macaca mulatta 22 2013-09-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1130/ E-MTAB-1467 miRNA expression profilling in Human African Trypanosomiasis microRNA profiling by array Homo sapiens 40 2013-09-25 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1467/E-MTAB-1467.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1467/ E-GEOD-51145 Highly efficient methane biocatalysis revealed in a methanotrophic bacterium RNA-seq of coding RNA Methylomicrobium alcaliphilum 20Z 8 2013-09-25 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51145/ E-GEOD-51144 Characterization of the genetic mouse model of non-small cells lung cancer p53R172H?g/KrasG12D RNA-seq of coding RNA Mus musculus 4 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51144/E-GEOD-51144.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51144/ E-GEOD-51142 Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites [Validation Set] ChIP-seq Homo sapiens 249 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51142/E-GEOD-51142.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51142/ E-GEOD-51141 Real-time quantitative PCR analysis of human colon cancer cells for autophagy related genes transcription profiling by RT-PCR Homo sapiens 2 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51141/E-GEOD-51141.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51141/ E-GEOD-51140 Real-time quantitative PCR analysis of human colon cancer cells for UPR related genes transcription profiling by RT-PCR Homo sapiens 2 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51140/E-GEOD-51140.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51140/ E-GEOD-51138 Ago2 ChIP-seq, RNA-seq of coding RNA Drosophila melanogaster 7 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51138/E-GEOD-51138.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51138/ E-GEOD-51136 mRNA-seq of Drosophila Ago2 mutants RNA-seq of coding RNA Drosophila melanogaster 4 2013-09-25 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51136/ E-GEOD-51134 ChIP-seq of endogenous Ago2 in Drosophila S2 cells ChIP-seq Drosophila melanogaster 3 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51134/E-GEOD-51134.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51134/ E-GEOD-51099 Expression data from Ctla4-/- and DKO CD4+ Tconv cells transcription profiling by array Mus musculus 4 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51099/E-GEOD-51099.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51099/E-GEOD-51099.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51099/ E-GEOD-48097 Molecular classification of mature aggressive B cell lymphoma using digital multiplexed gene expression on formalin-fixed paraffin-embedded biopsy specimens [Affymetrix] transcription profiling by array, unknown experiment type Homo sapiens 43 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48097/E-GEOD-48097.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48097/E-GEOD-48097.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48097/ E-GEOD-47573 Structural and functional characterization of the N-terminus of Schizosaccharomyces pombe Cwf10 RNA-seq of coding RNA Schizosaccharomyces pombe 8 2013-09-25 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47573/ E-GEOD-41405 Genes affected by Ret activation during estrogen stimulation or inhibition in MCF7/Aro cells transcription profiling by array Homo sapiens 24 2013-09-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41405/E-GEOD-41405.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41405/E-GEOD-41405.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41405/ E-MTAB-1892 Transcription profiling by array of yeast samples where Tho2 protein was tagged with a TAP tag and compared to an untagged wildtype strain of the same background transcription profiling by array Saccharomyces cerevisiae 4 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1892/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1892/E-MTAB-1892.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1892/ E-MTAB-1584 Genotyping by array of human BIN-67 small cell ovarian carcinoma to investigate genomic stability genotyping by array Homo sapiens 1 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1584/E-MTAB-1584.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1584/E-MTAB-1584.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1584/ E-MEXP-3872 Transcription profiling by array of human BIN-67 small cell ovarian carcinoma to investigate gene expression transcription profiling by array Homo sapiens 1 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3872/E-MEXP-3872.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3872/E-MEXP-3872.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3872/ E-GEOD-51143 Effect of BET inhibitors (JQ1 and RVX-208) on gene expression in HepG2 cells transcription profiling by array Homo sapiens 8 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51143/E-GEOD-51143.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51143/E-GEOD-51143.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51143/ E-GEOD-51123 3D Expression Data of Myc and Myc phospho-mutants transcription profiling by array Homo sapiens 15 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51123/E-GEOD-51123.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51123/E-GEOD-51123.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51123/ E-GEOD-51118 p300 is a preferred client protein for Nuclear Chaperones ChIP-seq, transcription profiling by array Homo sapiens 16 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51118/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51118/E-GEOD-51118.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51118/ E-GEOD-51117 Genome wide ChIP-Seq profiles of p300 and CBP in control and cells expressing HSP70K71E ChIP-seq Homo sapiens 10 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51117/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51117/ E-GEOD-51103 The Gene Expression Profile of Peripheral Blood Mononuclear Cells from EV71-Infected Rhesus Neonates transcription profiling by array Macaca mulatta 4 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51103/E-GEOD-51103.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51103/E-GEOD-51103.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51103/ E-GEOD-51102 Autoimmune antigen and serum factor antigen reactivity in a cohort of patients with mycobacterium infection shown previously to be positive and negative for IgG autoantibodies to IFN-gamma. other Homo sapiens 10 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51102/E-GEOD-51102.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51102/E-GEOD-51102.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51102/ E-GEOD-51101 Autoimmune antigen and serum factor antigen reactivity in a cohort of patients with autoimmune polyendocrinopathy syndrome type 1(APS-1) and healthy controls. other Homo sapiens 14 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51101/E-GEOD-51101.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51101/E-GEOD-51101.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51101/ E-GEOD-51100 Autoimmune antigen and serum factor antigen reactivity in a cohort of patients with systemic lupus erythematosus (SLE) and healthy controls from the ABCoN cohort. other Homo sapiens 45 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51100/E-GEOD-51100.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51100/E-GEOD-51100.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51100/ E-GEOD-51096 RNA sequencing of Kineococcus radiotolerans transcriptome in response to ionizing radiation RNA-seq of coding RNA Kineococcus radiotolerans 2 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51096/E-GEOD-51096.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51096/ E-GEOD-51083 Global gene expression changes in patient-derived CML cell line K562 after short- and long-term BCR-ABL kinase inhibition. transcription profiling by array Homo sapiens 12 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51083/E-GEOD-51083.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51083/ E-GEOD-51079 The polycomb protein Ezh2 regulates differentiation and plasticity of CD4 T helper type-1 and type-2 cells [ChIP-seq] ChIP-seq Mus musculus 6 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51079/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51079/ E-GEOD-50982 Cavin-3 Dictates the Balance Between ERK and Akt Signaling transcription profiling by array Homo sapiens 45 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50982/E-GEOD-50982.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50982/ E-GEOD-50751 Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma (DDLS) transcription profiling by array, comparative genomic hybridization by array Homo sapiens 8 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50751/E-GEOD-50751.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50751/E-GEOD-50751.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50751/ E-GEOD-50750 Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma (DDLS) part 2 comparative genomic hybridization by array Homo sapiens 2 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50750/E-GEOD-50750.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50750/E-GEOD-50750.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50750/ E-GEOD-50749 Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma (DDLS) part 1 transcription profiling by array Homo sapiens 6 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50749/E-GEOD-50749.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50749/ E-GEOD-50547 Global mRNA gene expression analysis profiling control HEK293 cell and cells expressing HSP70K71E transcription profiling by array Homo sapiens 6 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50547/E-GEOD-50547.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50547/E-GEOD-50547.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50547/ E-GEOD-49247 Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes RNA-seq of coding RNA Homo sapiens 6 2013-09-24 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49247/ E-GEOD-49223 Gene regulation by CBP-p300 in the lens placode - E9.5 transcription profiling by array Mus musculus 6 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49223/E-GEOD-49223.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49223/ E-GEOD-46527 High-throughput sequencing for microRNAs in uninjured and regenerating newt hearts RNA-seq of non coding RNA Notophthalmus viridescens 3 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46527/E-GEOD-46527.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46527/ E-GEOD-46430 Epe1 recruits the BET family bromodomain protein Bdf2 to establish heterochromatin boundaries ChIP-chip by tiling array Schizosaccharomyces pombe 2 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46430/E-GEOD-46430.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46430/E-GEOD-46430.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46430/ E-GEOD-44547 Microarray Analysis of microRNA Expression during Notophthalmus viridescens (red-spotted newt) heart regeneration transcription profiling by array Notophthalmus viridescens 3 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44547/E-GEOD-44547.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44547/E-GEOD-44547.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44547/ E-GEOD-43730 A Myc transcriptional program that is independent of EMT drives a poor prognosis tumor-propagating phenotype in HER2+ breast cancer transcription profiling by array Homo sapiens 11 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43730/E-GEOD-43730.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43730/E-GEOD-43730.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43730/ E-GEOD-41109 Brain transcriptomics of honey bee parasitized by Varroa destructor or Nosema ceranae RNA-seq of coding RNA Apis mellifera 6 2013-09-24 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41109/ E-GEOD-33505 Expression data from volatile treated and insect damaged Arabidopsis thaliana transcription profiling by array Arabidopsis thaliana 16 2013-09-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33505/E-GEOD-33505.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33505/E-GEOD-33505.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33505/ E-MTAB-1894 ChIP-chip by array was performed to examine the genome-wide association of Bye1 with chromatin in vivo ChIP-chip by array Saccharomyces cerevisiae 4 2013-09-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1894/E-MTAB-1894.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1894/ E-MTAB-1779 Transcription profiling by RT-PCR of lymphocytes from individuals exposed to styrene and unexposed controls to identify a panel of genes involved in styrene exposure transcription profiling by RT-PCR Homo sapiens 14 2013-09-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1779/E-MTAB-1779.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1779/ E-MEXP-3963 Transcriptional profile exhibited by peripheral blood mononuclear cells from healthy subjects transcription profiling by array Homo sapiens 11 2013-09-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3963/E-MEXP-3963.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3963/ E-MEXP-3962 Transcriptional profile exhibited by peripheral blood mononuclear cells from type 1 diabetes mellitus patients transcription profiling by array Homo sapiens 3 2013-09-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3962/E-MEXP-3962.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3962/ E-MEXP-3961 MicroRNA profiling by array of peripheral blood mononuclear cells from healthy patients microRNA profiling by array Homo sapiens 9 2013-09-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3961/E-MEXP-3961.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3961/ E-GEOD-50761 Targeted DNA demethylation using TALE-TET1 fusion proteins methylation profiling by high throughput sequencing Homo sapiens 435 2013-09-23 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50761/ E-GEOD-50697 Gene expression of SUM159 breast cancer cell line expressing microRNA--203 transcription profiling by array Homo sapiens 6 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50697/E-GEOD-50697.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50697/E-GEOD-50697.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50697/ E-GEOD-50504 Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair transcription profiling by array Mus musculus 16 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50504/E-GEOD-50504.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50504/ E-GEOD-50503 Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair [mixed stage] transcription profiling by array Mus musculus 6 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50503/E-GEOD-50503.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50503/ E-GEOD-50502 Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair [maturation stage] transcription profiling by array Mus musculus 8 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50502/E-GEOD-50502.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50502/ E-GEOD-50501 Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair [CL stage] transcription profiling by array Mus musculus 2 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50501/E-GEOD-50501.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50501/ E-GEOD-49219 Histone posttranslational modifications and cell fate determination: Lens induction requires the lysine acetyltransferases CBP and p300 transcription profiling by array Mus musculus 12 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49219/E-GEOD-49219.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49219/ E-GEOD-49218 Gene regulation by CBP-p300 in the lens placode - E10.5 transcription profiling by array Mus musculus 6 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49218/E-GEOD-49218.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49218/ E-GEOD-49216 Gene regulation by Pax6 in the lens placode - E10.25 transcription profiling by array Mus musculus 6 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49216/E-GEOD-49216.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49216/ E-GEOD-48574 Gene expression in human healthy control and ISCU myopathy patient muscle biopsies transcription profiling by array Homo sapiens 8 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48574/E-GEOD-48574.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48574/E-GEOD-48574.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48574/ E-GEOD-48138 Expression and regulation of lincRNAs during T cell development and differentiation RNA-seq of coding RNA Mus musculus 122 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48138/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48138/ E-GEOD-47801 Genome-wide gene expression analysis on tibialis anterior muscle from nebulin SH3 domain deleted (Neb?SH3) mice transcription profiling by array Mus musculus 6 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47801/E-GEOD-47801.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47801/ E-GEOD-46582 Determine the effects of mTORC1 inhibition by rapamycin on mouse liver transcriptome transcription profiling by array Mus musculus 33 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46582/E-GEOD-46582.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46582/ E-GEOD-46515 Expression data from mouse model using targeted deletion of hepatic RICTOR (Albumin-Cre Rictor LoxP/LoxP) transcription profiling by array Mus musculus 8 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46515/E-GEOD-46515.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46515/E-GEOD-46515.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46515/ E-GEOD-46477 Inhibition of RUNX2 transcriptional activity blocks the proliferation, migration and invasion of epithelial ovarian carcinoma cells transcription profiling by array Homo sapiens 2 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46477/E-GEOD-46477.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46477/E-GEOD-46477.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46477/ E-GEOD-46458 Fsh controls gene expression in fish both independently of and through steroid mediation transcription profiling by array Oncorhynchus mykiss 27 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46458/E-GEOD-46458.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46458/E-GEOD-46458.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46458/ E-GEOD-45211 Chromosome-wide profiling of X-inactivation status and epigenetic regulation in opossum fetal brain and placenta RNA-seq of coding RNA Monodelphis domestica 16 2013-09-23 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45211/ E-GEOD-45186 Chromosome-wide profiling of X-inactivation status and epigenetic regulation in fetal brain ChIP-seq Monodelphis domestica 8 2013-09-23 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45186/ E-GEOD-43197 Natural cardiogenesis-based template predicts cardiogenic potential of induced pluripotent stem cell lines transcription profiling by array Mus musculus 27 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43197/E-GEOD-43197.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43197/E-GEOD-43197.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43197/ E-GEOD-41963 Gene expression analysis in wild-type and OsGRX8 overexpression line in response to various treatments transcription profiling by array Arabidopsis thaliana 16 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41963/E-GEOD-41963.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41963/E-GEOD-41963.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41963/ E-GEOD-40065 H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs ChIP-seq, RNA-seq of coding RNA Mus musculus 9 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40065/E-GEOD-40065.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40065/ E-GEOD-40064 H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs [RNA-Seq] RNA-seq of coding RNA Mus musculus 6 2013-09-23 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40064/ E-GEOD-40063 H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs [ChIP-Seq] ChIP-seq Mus musculus 3 2013-09-23 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40063/ E-GEOD-39634 Influence of 3,5,3'-Triiodothyronine (T3) on differentiating progenitor cells of the enteric nervous system (ENS) transcription profiling by array Mus musculus 6 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39634/E-GEOD-39634.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39634/E-GEOD-39634.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39634/ E-GEOD-38605 Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos RNA-seq of coding RNA, RNA-seq of non coding RNA Xenopus (Silurana) tropicalis 8 2013-09-23 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38605/ E-GEOD-36807 Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples. transcription profiling by array Homo sapiens 35 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36807/E-GEOD-36807.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36807/E-GEOD-36807.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36807/ E-GEOD-35918 Expression data of Xrx1 gain and loss of function experiments from early Xenopus laevis embryos (stage 13) transcription profiling by array Xenopus laevis 20 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35918/E-GEOD-35918.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35918/E-GEOD-35918.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35918/ E-GEOD-31887 Functional analysis of Arabidopsis MYB106 and WIN1/SHN1 transcription factors transcription profiling by array Arabidopsis thaliana 27 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31887/E-GEOD-31887.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31887/E-GEOD-31887.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31887/ E-GEOD-31886 Transcriptomes of 35S:MYB106VP16 and wild-type Arabidopsis seedling transcription profiling by array Arabidopsis thaliana 7 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31886/E-GEOD-31886.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31886/E-GEOD-31886.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31886/ E-GEOD-31885 Transcriptomes of 35S:WIN1 and vector-control Arabidopsis seedling transcription profiling by array Arabidopsis thaliana 8 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31885/E-GEOD-31885.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31885/E-GEOD-31885.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31885/ E-GEOD-31884 Transcriptomes of 35S:MYB106SRDX, 35S:WIN1SRDX and wild-type Arabidopsis seedling transcription profiling by array Arabidopsis thaliana 12 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31884/E-GEOD-31884.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31884/E-GEOD-31884.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31884/ E-GEOD-19913 Syndecan-2 and apoptosis in osteosarcoma transcription profiling by array Homo sapiens 4 2013-09-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19913/E-GEOD-19913.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19913/E-GEOD-19913.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19913/ E-MEXP-3964 Transcriptional profiling of mRNAs from pooled peripheral blood mononuclear cells of healthy pregnant women pool_hpw. transcription profiling by array Homo sapiens 2 2013-09-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3964/E-MEXP-3964.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3964/ E-MEXP-3960 MicroRNA profiling by array of peripheral blood mononuclear cells from type 1 diabetes mellitus patients microRNA profiling by array Homo sapiens 8 2013-09-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3960/E-MEXP-3960.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3960/ E-GEOD-51075 Transcriptional responses of murine macrophages to the adenylate cyclase toxin of Bordetella pertussis transcription profiling by array Mus musculus 12 2013-09-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51075/E-GEOD-51075.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51075/E-GEOD-51075.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51075/ E-GEOD-47558 Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition other, RNA-seq of coding RNA Danio rerio 35 2013-09-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47558/ E-GEOD-47553 Effect of progerin on p53-deficient vascular smooth muscle cells transcription profiling by array Homo sapiens 8 2013-09-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47553/E-GEOD-47553.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47553/E-GEOD-47553.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47553/ E-GEOD-51073 Expression data from non-pigmented and pigmented mouse melanocytes transcription profiling by array Mus musculus 4 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51073/E-GEOD-51073.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51073/E-GEOD-51073.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51073/ E-GEOD-51057 Methylome Analysis and Epigenetic Changes Associated with Menarcheal Age methylation profiling by array Homo sapiens 329 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51057/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51057/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51057/ E-GEOD-51055 Divergent Compensatory Responses to High Fat Diet Between C57BL6/J and C57BLKs/J Inbred Mouse Strains transcription profiling by array Mus musculus 24 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51055/E-GEOD-51055.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51055/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51055/ E-GEOD-51044 Gamma-secretase inhibitor plus fludarabine in CLL transcription profiling by array Homo sapiens 4 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51044/E-GEOD-51044.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51044/E-GEOD-51044.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51044/ E-GEOD-51030 Gene expression analysis of human adipose-derived stem cells. transcription profiling by array Homo sapiens 1 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51030/E-GEOD-51030.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51030/E-GEOD-51030.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51030/ E-GEOD-50134 Recurrent copy number alterations are associated with poor prognosis and HPV infection in penile carcinomas comparative genomic hybridization by array Homo sapiens 38 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50134/E-GEOD-50134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50134/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50134/ E-GEOD-48176 TFAM ChIP-seq in HeLa cells ChIP-seq Homo sapiens 8 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48176/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48176/ E-GEOD-41496 Toll-like receptor 7 is a primary sensor of malaria infection transcription profiling by array Mus musculus 40 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41496/E-GEOD-41496.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41496/E-GEOD-41496.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41496/ E-GEOD-32389 Nasopharyngeal carcinoma patient samples: radio-sensitive samples vs. radio-resistant samples transcription profiling by array Homo sapiens 20 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32389/E-GEOD-32389.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32389/E-GEOD-32389.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32389/ E-GEOD-28238 Low grade gliomas transcription profiling by array Homo sapiens 40 2013-09-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28238/E-GEOD-28238.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28238/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28238/ E-MEXP-3757 Transcription profiling by array of human retinas to investigate gene expression in eyes of HIV positive and negative patients transcription profiling by array Homo sapiens 16 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3757/E-MEXP-3757.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3757/E-MEXP-3757.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3757/ E-GEOD-51049 A mechanistic study on the metastasis inducing function of FUS-CHOP fusion protein in liposarcoma transcription profiling by array Homo sapiens 8 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51049/E-GEOD-51049.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51049/ E-GEOD-51038 Expression data from Sf3b1 heterozygous Lineage-c-Kit+Sca-1+ (LSK) bone marrow cells transcription profiling by array Mus musculus 4 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51038/E-GEOD-51038.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51038/E-GEOD-51038.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51038/ E-GEOD-51035 RNA-seq analysis of broiler liver transcriptome reveals novel responses to heat stress RNA-seq of coding RNA Gallus gallus 8 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51035/E-GEOD-51035.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51035/ E-GEOD-51033 Niche-based screening identifies small-molecule inhibitors of leukemia stem cells transcription profiling by array Mus musculus 7 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51033/E-GEOD-51033.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51033/ E-GEOD-51032 EPIC-Italy at HuGeF methylation profiling by array Homo sapiens 845 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51032/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51032/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51032/ E-GEOD-51020 Gene expression profiling of MYC-amplified medulloblastoma cell lines treated by JQ1, a BET bromodomain inhibitor transcription profiling by array Homo sapiens 10 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51020/E-GEOD-51020.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51020/E-GEOD-51020.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51020/ E-GEOD-50443 Electrochemical selection and characterization of a Shewanella oneidensis mutant with enhanced current-generating capability and altered gene expression profiles transcription profiling by array Shewanella oneidensis 6 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50443/E-GEOD-50443.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50443/E-GEOD-50443.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50443/ E-GEOD-50253 Genomic profiling of Anaplastic Large Cell Lymphoma genotyping by array, comparative genomic hybridization by array Homo sapiens 70 2013-09-20 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50253/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50253/ E-GEOD-50252 Genomic profiling of Richter-syndrome Chronic Lymphocytic Leukemia genotyping by array, comparative genomic hybridization by array Homo sapiens 146 2013-09-20 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50252/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50252/ E-GEOD-50156 Gene expression profiles mas5D, ssa2D, hsf1-overexpressing and heat-stressed wild type Schizosaccharomyces pombe cells RNA-seq of coding RNA Schizosaccharomyces pombe 6 2013-09-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50156/ E-GEOD-50060 Gene expression changes in group 2 sigma factor mutant, ?sigCDE, in standard growth conditions and after high-light treatment transcription profiling by array Synechocystis sp. PCC 6803 13 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50060/E-GEOD-50060.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50060/E-GEOD-50060.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50060/ E-GEOD-49961 DNA intermediates of meiotic recombination in synchronous S. pombe at optimal temperature ChIP-chip by tiling array Schizosaccharomyces pombe 6 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49961/E-GEOD-49961.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49961/E-GEOD-49961.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49961/ E-GEOD-46841 DNA replication and DSB factor binding in the meiotic S-phase checkpoint in budding yeast comparative genomic hybridization by array, ChIP-chip by tiling array Saccharomyces cerevisiae 31 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46841/E-GEOD-46841.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46841/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46841/ E-GEOD-46840 CGH mesurement of DNA replication in wild-type and cdc6-mn replication deficient strains. comparative genomic hybridization by array Saccharomyces cerevisiae 4 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46840/E-GEOD-46840.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46840/E-GEOD-46840.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46840/ E-GEOD-44686 Genome-wide analysis of dFOXO binding sites in Drosophila ChIP-seq Drosophila melanogaster 8 2013-09-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44686/ E-GEOD-43036 Synergistic Activation of Inflammatory Cytokine Genes by Priming of Regulatory DNA Elements for Increased Transcription in Response to TLR Signaling ChIP-seq Homo sapiens 21 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43036/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43036/ E-GEOD-41631 The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution RNA-seq of coding RNA Pyronema omphalodes 6 2013-09-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41631/ E-GEOD-41261 Exploring the larval transcriptome of the common sole (Solea solea L.) transcription profiling by array Solea solea 31 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41261/E-GEOD-41261.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41261/E-GEOD-41261.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41261/ E-GEOD-40240 Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (ER and DR) transcription profiling by array Homo sapiens 28 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40240/E-GEOD-40240.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40240/E-GEOD-40240.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40240/ E-GEOD-39846 Profiling of lncRNAs and protein-coding RNAs in colorectal cancer and of MYC-regulated lncRNAs and protein-coding RNAs transcription profiling by array Homo sapiens 22 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39846/E-GEOD-39846.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39846/E-GEOD-39846.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39846/ E-GEOD-38233 Study functions of ADAR proteins using next generation sequencing of genome and transcriptome RNA-seq of coding RNA Homo sapiens 20 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38233/E-GEOD-38233.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38233/ E-GEOD-37475 CSF-1R inhibition alters macrophage polarization and blocks gliomagenesis transcription profiling by array Mus musculus 16 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37475/E-GEOD-37475.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37475/E-GEOD-37475.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37475/ E-GEOD-37270 BET bromodomain inhibition suppresses TH17-mediated pathology transcription profiling by array Mus musculus 4 2013-09-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37270/E-GEOD-37270.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37270/E-GEOD-37270.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37270/ E-MTAB-1848 ChIP-seq of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s for C-terminally FLAG-tagged HilD to identify novel HilD-regulated genes ChIP-seq Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu 2 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1848/ E-MTAB-1446 RNA-seq of M. tuberculosis to investigate genotype-phenotype diversity amongst clinical isolates RNA-seq of coding RNA Mycobacterium tuberculosis 13 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1446/ E-GEOD-51003 A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility ChIP-seq, transcription profiling by array Homo sapiens 5 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51003/E-GEOD-51003.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-51003/E-GEOD-51003.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51003/ E-GEOD-51002 A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility [DNase-Seq] ChIP-seq Homo sapiens 2 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-51002/ E-GEOD-50993 STAT3 promotes motor neuron differentiation by collaborating with motor neuron-specific LIM complex ChIP-seq Mus musculus 4 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50993/ E-GEOD-50990 Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees methylation profiling by high throughput sequencing, RNA-seq of coding RNA Apis mellifera, Apis mellifera scutellata 8 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50990/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50990/ E-GEOD-50985 Transcriptomic analysis of a nickel-resistant Saccharomyces cerevisiae mutant obtained by evolutionary engineering transcription profiling by array Saccharomyces cerevisiae 6 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50985/E-GEOD-50985.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50985/ E-GEOD-50981 Transcriptional changes in Zea mays seedlings treated with insect elicitor (volicitin). transcription profiling by array Zea mays 4 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50981/E-GEOD-50981.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50981/E-GEOD-50981.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50981/ E-GEOD-50979 Direct comparison of effects of slow-freezing and vitrification procedures on rabbit late blastocyst transcriptome transcription profiling by array Oryctolagus cuniculus 3 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50979/E-GEOD-50979.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50979/E-GEOD-50979.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50979/ E-GEOD-50975 How does exposure of yellow perch (Perca flavescens) to nickel and cadmium affect the transcriptome-results from a 1000 candidate-gene microarray transcription profiling by array Perca flavescens 176 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50975/E-GEOD-50975.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50975/ E-GEOD-50948 Expression Data from transNOAH breast cancer trial transcription profiling by array Homo sapiens 156 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50948/E-GEOD-50948.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50948/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50948/ E-GEOD-50860 Re-analysis of E-MTAB-1585 unknown experiment type, RNA-seq of coding RNA Mus musculus 14 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50860/ E-GEOD-50745 Genotype-by-diet interaction effects on transcriptome profiles in Drosophila melanogaster transcription profiling by array Drosophila melanogaster 236 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50745/E-GEOD-50745.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50745/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50745/ E-GEOD-48663 In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency RNA-seq of coding RNA Xenopus (Silurana) tropicalis 7 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48663/ E-GEOD-48560 In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. ChIP-seq Xenopus (Silurana) tropicalis 10 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48560/E-GEOD-48560.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48560/ E-GEOD-48082 Temperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana ChIP-seq Arabidopsis thaliana 14 2013-09-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48082/ E-GEOD-48028 Differentially expressed miRNAs between Alzheimer's disease and control mice's hippocampus transcription profiling by array Mus musculus 4 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48028/E-GEOD-48028.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48028/E-GEOD-48028.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48028/ E-GEOD-47898 The AP-1 Transcription Factor c-Jun Prevents Stress-Imposed Maladaptive Remodeling of the Heart transcription profiling by array Mus musculus 4 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47898/E-GEOD-47898.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47898/E-GEOD-47898.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47898/ E-GEOD-46252 Microarray data of leukemia cells with or without IKK inhibitor treatment transcription profiling by array Homo sapiens, Mus musculus 12 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46252/E-GEOD-46252.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46252/E-GEOD-46252.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46252/ E-GEOD-46251 Microarray data of human leukemia cells MV4;11 with or without IKK inhibitor treatment. transcription profiling by array Homo sapiens 6 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46251/E-GEOD-46251.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46251/E-GEOD-46251.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46251/ E-GEOD-46250 Microarray data of mouse MLL-AF10 leukemia cells with or without IKK inhibitor treatment transcription profiling by array Mus musculus 6 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46250/E-GEOD-46250.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46250/E-GEOD-46250.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46250/ E-GEOD-45823 Campylobacter jejuni transcriptomic response to benzylisothiocyanate transcription profiling by array Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 42 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45823/E-GEOD-45823.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45823/E-GEOD-45823.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45823/ E-GEOD-44662 Genome-wide DNA methylation, gene expression, and copy number integrative analysis of melanoma brain metastasis transcription profiling by array, methylation profiling by array Homo sapiens 62 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44662/E-GEOD-44662.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44662/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44662/ E-GEOD-44661 DNA methylation analysis of melanoma progression to brain metastasis methylation profiling by array Homo sapiens 40 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44661/E-GEOD-44661.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44661/ E-GEOD-44660 Affymetrix expression array data for melanoma progression to the brain transcription profiling by array Homo sapiens 22 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44660/E-GEOD-44660.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44660/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44660/ E-GEOD-44019 Affymetrix SNP array data for metastatic melanoma specimens genotyping by array, comparative genomic hybridization by array Homo sapiens 16 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44019/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44019/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44019/ E-GEOD-43892 Transcriptome data used for gene annotation RNA-seq of coding RNA Sus scrofa 4 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43892/E-GEOD-43892.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43892/ E-GEOD-43456 Cytokine-dependent dendritic cell differentiation in the splenic microenvironment transcription profiling by array Mus musculus 8 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43456/E-GEOD-43456.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43456/ E-GEOD-43411 NanoString miRNA profiling of THP1-differentiated macrophages treated with LPS derived from A. aggregatibacter, P. gingivalis and Pg LPS treated with cigrate smoke extract (Pg CSE) transcription profiling by array Homo sapiens 4 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43411/E-GEOD-43411.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43411/E-GEOD-43411.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43411/ E-GEOD-41988 Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the notch pathway RNA-seq of coding RNA Danio rerio 3 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41988/E-GEOD-41988.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41988/ E-GEOD-41073 Synbiotic impact of tagatose on viability of Lactobacillus rhamnosus strain GG mediated by the phosphotransferase system (PTS) transcription profiling by array Lactobacillus rhamnosus GG 1 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41073/E-GEOD-41073.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41073/E-GEOD-41073.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41073/ E-GEOD-41014 The GtaR quorum-sensing protein negatively regulates a capsular polysaccharide gene transfer agent (RcGTA) receptor on Rhodobacter capsulatus cells transcription profiling by array Rhodobacter capsulatus 4 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41014/E-GEOD-41014.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41014/E-GEOD-41014.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41014/ E-GEOD-40999 Th2 cytokine IL-4 is critical in initiating pulmonary vascular inflammation under hypoxic conditions and induces pulmonary vascular endothelial cell activation. transcription profiling by array Mus musculus 18 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40999/E-GEOD-40999.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40999/ E-GEOD-28163 Genotypic and Phenotypic Versatility of Aspergillus flavus during Maize Exploitation transcription profiling by array Aspergillus flavus 12 2013-09-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28163/E-GEOD-28163.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28163/E-GEOD-28163.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28163/ E-MEXP-3905 Transcription profiling by array of human mesenchymal stromal cells from patients with multiple sclerosis before and after autologous hematopoietic stem cell transplantation. transcription profiling by array Homo sapiens 12 2013-09-18 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3905/E-MEXP-3905.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3905/ E-GEOD-50970 Quantitative Prediction of Signal Pathway Activity from Genome-wide Expression Data transcription profiling by array Mus musculus 63 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50970/E-GEOD-50970.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50970/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50970/ E-GEOD-50969 Timecourse of doxycycline induction in bitransgenic MTB/TAN, MTB/TOM, and MTB/TWNT1 mice or monotransgenic MTB control mice transcription profiling by array Mus musculus 48 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50969/E-GEOD-50969.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50969/E-GEOD-50969.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50969/ E-GEOD-50968 TGF beta Dosage Experiment transcription profiling by array Mus musculus 15 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50968/E-GEOD-50968.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50968/E-GEOD-50968.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50968/ E-GEOD-50957 Molecular Hallmarks of Experimentally Acquired Immunity to Malaria transcription profiling by array, RNA-seq of coding RNA Homo sapiens 12 2013-09-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50957/ E-GEOD-50954 Genes induced by IFN-beta, IFN-gamma or unphosphoraylted STAT1 in human fibroblasts transcription profiling by array Homo sapiens 10 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50954/E-GEOD-50954.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50954/ E-GEOD-50950 Expression data from adult Shh-responding astroglia cells in mice transcription profiling by array Mus musculus 15 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50950/E-GEOD-50950.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50950/E-GEOD-50950.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50950/ E-GEOD-50932 Analysis of gene expression with the Hmga2 allelic series. RNA-seq of coding RNA Mus musculus 18 2013-09-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50932/ E-GEOD-50924 microRNA expression profile in human gliomas transcription profiling by RT-PCR Homo sapiens 8 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50924/E-GEOD-50924.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50924/ E-GEOD-49032 Genome-wide signatures of differential DNA methylation and gene expression in pediatric ALL transcription profiling by array, methylation profiling by array Homo sapiens 1053 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49032/E-GEOD-49032.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49032/ E-GEOD-49031 Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia methylation profiling by array Homo sapiens 945 2013-09-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49031/ E-GEOD-47858 High-efficiency RNA cloning enables quantitative measurement of miRNA expression by deep sequencing RNA-seq of non coding RNA Homo sapiens, Mus musculus 13 2013-09-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47858/ E-GEOD-47051 Genome-wide differential gene expression signatures in pediatric acute lymphoblastic leukemia subtypes transcription profiling by array Homo sapiens 108 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47051/E-GEOD-47051.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47051/ E-GEOD-46839 ChIP-chip of DSB factors in the presence and absence of S phase checkpoint induction ChIP-chip by tiling array Saccharomyces cerevisiae 27 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46839/E-GEOD-46839.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46839/ E-GEOD-46802 Global analysis of DNA methylation changes during progression of oral tumorigenesis transcription profiling by array, methylation profiling by array Homo sapiens 60 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46802/E-GEOD-46802.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46802/E-GEOD-46802.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46802/ E-GEOD-46622 High-throughput sequencing of matched colorectal normal, tumor and metastasis tissues and proof-of principal bioinformatics modeling of therapeutic consequences of miRNA applications RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 36 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46622/E-GEOD-46622.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46622/ E-GEOD-41177 Region-specific gene expression profiles in left atria of patients with valvular atrial fibrillation transcription profiling by array Homo sapiens 38 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41177/E-GEOD-41177.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41177/E-GEOD-41177.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41177/ E-GEOD-40941 Transcriptome analysis of M.tuberculosis using RNA-seq indicates WhiB6 repression of dormancy associated genes RNA-seq of coding RNA Mycobacterium tuberculosis CDC1551 6 2013-09-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40941/ E-GEOD-34134 Role of the ArcAB two-component system in oxidative stress transcription profiling by array Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 6 2013-09-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34134/E-GEOD-34134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34134/E-GEOD-34134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34134/ E-GEOD-50913 Expression data from EGR1-transfected H1299 cells vs normal H1299 cells transcription profiling by array Homo sapiens 2 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50913/E-GEOD-50913.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50913/E-GEOD-50913.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50913/ E-GEOD-50910 Gene expression of thymic settling progenitors from embryos at E13 compared to E18 transcription profiling by array Mus musculus 6 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50910/E-GEOD-50910.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50910/E-GEOD-50910.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50910/ E-GEOD-50898 PDL2+, PDL2- and LPS treated PDL2- WT bone-marrow derived murine DCs transcription profiling by array Mus musculus 3 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50898/E-GEOD-50898.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50898/E-GEOD-50898.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50898/ E-GEOD-50892 Expression data from kidney biopsies of liver disease patients transcription profiling by array Homo sapiens 17 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50892/E-GEOD-50892.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50892/E-GEOD-50892.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50892/ E-GEOD-50886 microRNA and gene expression profile in ischemia reperfusion injury in heart transplantation transcription profiling by array Mus musculus 10 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50886/E-GEOD-50886.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50886/E-GEOD-50886.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50886/ E-GEOD-50885 microRNA expression in heart tissue transcription profiling by array Mus musculus 5 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50885/E-GEOD-50885.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50885/E-GEOD-50885.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50885/ E-GEOD-50884 Expression data from heart tissue transcription profiling by array Mus musculus 5 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50884/E-GEOD-50884.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50884/E-GEOD-50884.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50884/ E-GEOD-50880 Expression data from preadipocytes isolated from laying hen transcription profiling by array Gallus gallus 6 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50880/E-GEOD-50880.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50880/E-GEOD-50880.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50880/ E-GEOD-50825 Gene expression analysis of yehUT two component regulatory system transcription profiling by array Salmonella enterica subsp. enterica serovar Typhi, Salmonella enterica subsp. enterica serovar Typhimurium 24 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50825/E-GEOD-50825.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50825/E-GEOD-50825.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50825/ E-GEOD-50103 Unlimited in vitro expansion of adult bi-potent pancreas progenitors through the Lgr5/Rspondin axis transcription profiling by array Mus musculus 10 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50103/E-GEOD-50103.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50103/E-GEOD-50103.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50103/ E-GEOD-49826 Gene expression profiling on innervated and denervated muscles of Smad4 KO and control mice. transcription profiling by array Mus musculus 12 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49826/E-GEOD-49826.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49826/E-GEOD-49826.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49826/ E-GEOD-49629 Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization transcription profiling by array, methylation profiling by high throughput sequencing Homo sapiens 24 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49629/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49629/E-GEOD-49629.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49629/ E-GEOD-49628 Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Expression Array] transcription profiling by array Homo sapiens 9 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49628/E-GEOD-49628.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49628/E-GEOD-49628.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49628/ E-GEOD-49627 Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq] methylation profiling by high throughput sequencing Homo sapiens 15 2013-09-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49627/ E-GEOD-48964 Expression data from Adipose Stem Cells (ASC) from morbidly obese and non-obese individuals transcription profiling by array Homo sapiens 6 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48964/E-GEOD-48964.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48964/E-GEOD-48964.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48964/ E-GEOD-47195 SALT-RESPONSIVE ERF1 expression profiling in rice roots transcription profiling by array Oryza sativa 6 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47195/E-GEOD-47195.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47195/E-GEOD-47195.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47195/ E-GEOD-46155 Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose transcription profiling by array Trichoderma reesei QM9414 3 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46155/E-GEOD-46155.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46155/E-GEOD-46155.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46155/ E-GEOD-46038 The effects of dietary selenium on selenocysteine incorporation and selenoprotein expression RNA-seq of coding RNA Mus musculus 12 2013-09-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46038/ E-GEOD-44056 Gene expression data from lateral ventricle choroid plexuses of developing and adult rats transcription profiling by array Rattus norvegicus 6 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44056/E-GEOD-44056.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44056/E-GEOD-44056.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44056/ E-GEOD-43873 Focal Adhesion Kinase Dependent Expression transcription profiling by array Mus musculus 12 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43873/E-GEOD-43873.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43873/E-GEOD-43873.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43873/ E-GEOD-42221 Comparative intraindividual transcriptome analysis of B-precursor ALL of childhood transcription profiling by array Homo sapiens 11 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42221/E-GEOD-42221.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42221/E-GEOD-42221.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42221/ E-GEOD-42187 Gene expression profile in melanomas from Pdk1-inactivated BrafV600E::Pten-/- mice transcription profiling by array Mus musculus 8 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42187/E-GEOD-42187.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42187/ E-GEOD-42056 Affymetrix SNP array data for acute lymphoblastic leukemia samples comparative genomic hybridization by array Homo sapiens 40 2013-09-17 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42056/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42056/ E-GEOD-41588 Expression data for HT29 cells treated with 5-aza-deoxy-cytidine transcription profiling by array, RNA-seq of coding RNA Homo sapiens 18 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41588/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41588/E-GEOD-41588.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41588/ E-GEOD-41586 Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq] RNA-seq of coding RNA Homo sapiens 9 2013-09-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41586/ E-GEOD-41446 Early molecular assessment of osseointegration in humans transcription profiling by array Homo sapiens 44 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41446/E-GEOD-41446.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41446/E-GEOD-41446.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41446/ E-GEOD-41364 Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [Affymetrix] transcription profiling by array Homo sapiens 9 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41364/E-GEOD-41364.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41364/E-GEOD-41364.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41364/ E-GEOD-40113 Distinct Micro-RNA profiles are associated with severity of hepatitis C virus recurrence and acute cellular rejection after liver transplant transcription profiling by array Homo sapiens 29 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40113/E-GEOD-40113.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40113/E-GEOD-40113.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40113/ E-GEOD-38520 Gene expression of soybean roots inoculated with wild-type and type III secretion mutant strains of Bradyrhizobium elkanii transcription profiling by array Glycine max 18 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38520/E-GEOD-38520.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38520/E-GEOD-38520.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38520/ E-GEOD-27678 Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix transcription profiling by array Homo sapiens 77 2013-09-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27678/E-GEOD-27678.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27678/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27678/ E-MTAB-1667 RNA-seq of coding RNA from Mycobacterium tuberculosis H37Rv overexpressing HigB compared to the empty vector control strain to investigate the role of the HigB toxin RNA-seq of coding RNA Mycobacterium tuberculosis 2 2013-09-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1667/ E-GEOD-49183 Nucleosome free DNA- and acetyl histone-binding components recruit SWR1 to yeast promoters for H2A.Z replacement ChIP-chip by tiling array Saccharomyces cerevisiae 8 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49183/E-GEOD-49183.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49183/E-GEOD-49183.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49183/ E-GEOD-48778 In search of epigenetic marks in testes and sperm cells of differentially fed boars transcription profiling by array, RNA-seq of coding RNA Sus scrofa 12 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48778/E-GEOD-48778.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48778/E-GEOD-48778.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48778/ E-GEOD-48777 In search of epigenetic marks in testes and sperm cells of differentially fed boars [RNA-Seq] RNA-seq of coding RNA Sus scrofa 4 2013-09-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48777/ E-GEOD-48597 In search of epigenetic marks in testes and sperm cells of differentially fed boars [Agilent] transcription profiling by array Sus scrofa 8 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48597/E-GEOD-48597.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48597/E-GEOD-48597.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48597/ E-GEOD-48587 Expression data from Pseudomonas aeruginosa PAO1 and an isogenic HCN negative mutant (PAO6344), grown under cyanogenic conditions. transcription profiling by array Pseudomonas aeruginosa, Pseudomonas aeruginosa PAO1 4 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48587/E-GEOD-48587.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48587/E-GEOD-48587.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48587/ E-GEOD-47038 DNA methylation profiles across different brain regions in healthy mice methylation profiling by array Mus musculus 64 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47038/E-GEOD-47038.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47038/ E-GEOD-47036 DNA methylation profiles across different brain regions in Alzheimer disease mice models methylation profiling by array Mus musculus 16 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47036/E-GEOD-47036.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47036/ E-GEOD-45885 Potential biomarkers of non-obstructive azoospermia identified in microarray gene expression analysis transcription profiling by array Homo sapiens 31 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45885/E-GEOD-45885.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45885/E-GEOD-45885.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45885/ E-GEOD-45678 Genome-wide distribution of the three condensin complexes in C. elegans ChIP-seq, RNA-seq of coding RNA Caenorhabditis elegans 92 2013-09-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45678/ E-GEOD-45410 MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection transcription profiling by array, RNA-seq of coding RNA Danio rerio 17 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45410/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45410/E-GEOD-45410.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45410/ E-GEOD-45409 MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection [miRNA profile] transcription profiling by array Danio rerio 9 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45409/E-GEOD-45409.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45409/E-GEOD-45409.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45409/ E-GEOD-45209 MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection [RNA-seq] RNA-seq of coding RNA Danio rerio 8 2013-09-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45209/ E-GEOD-45142 Gene expression profile of A549 cells from tissue of 4D model predicts poor prognosis in lung cancer patients transcription profiling by array Homo sapiens 18 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45142/E-GEOD-45142.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45142/E-GEOD-45142.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45142/ E-GEOD-44072 Genome-wide analysis and comparison of E15 and adult rat lateral ventricular choroid plexus epithelial cells. RNA-seq of coding RNA Rattus norvegicus 6 2013-09-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44072/ E-GEOD-42167 Time series of Methanococcus maripaludis MM901, a shift from a H2-limited condition to a H2-excess condition transcription profiling by tiling array Methanococcus maripaludis S2 32 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42167/E-GEOD-42167.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42167/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42167/ E-GEOD-42166 Time series of Methanococcus maripaludis MM901:del_mtd (MMP0372), a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 22 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42166/E-GEOD-42166.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42166/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42166/ E-GEOD-42165 Time series of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820), a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 22 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42165/E-GEOD-42165.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42165/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42165/ E-GEOD-42164 Time series of Methanococcus maripaludis MM901:del_MMP1447, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 20 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42164/E-GEOD-42164.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42164/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42164/ E-GEOD-42162 Time series of Methanococcus maripaludis MM901:del_MMP1100, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 20 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42162/E-GEOD-42162.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42162/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42162/ E-GEOD-42159 Time series of Methanococcus maripaludis MM901:del_MMP0719, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 20 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42159/E-GEOD-42159.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42159/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42159/ E-GEOD-42143 Time series of Methanococcus maripaludis MM901, a shift from a H2-excess condition to a H2-limiting condition transcription profiling by tiling array Methanococcus maripaludis S2 32 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42143/E-GEOD-42143.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42143/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42143/ E-GEOD-42130 Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 32 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42130/E-GEOD-42130.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42130/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42130/ E-GEOD-42126 Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and N-limiting condition to a H2-limited and N-excess condition in chemostats (growth rate held constant) transcription profiling by tiling array Methanococcus maripaludis S2 32 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42126/E-GEOD-42126.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42126/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42126/ E-GEOD-42124 Steady-state samples of Methanococcus maripaludis MM901 grown on N14 or N15 transcription profiling by array Methanococcus maripaludis S2 12 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42124/E-GEOD-42124.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42124/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42124/ E-GEOD-42123 Steady-state samples of Methanococcus maripaludis MM901:del_mtd (MMP0372) transcription profiling by tiling array Methanococcus maripaludis S2 4 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42123/E-GEOD-42123.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42123/E-GEOD-42123.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42123/ E-GEOD-42122 Steady-state samples of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820) transcription profiling by tiling array Methanococcus maripaludis S2 4 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42122/E-GEOD-42122.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42122/E-GEOD-42122.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42122/ E-GEOD-42121 Steady-state samples of Methanococcus maripaludis MM901:del_frcA (MMP0820) transcription profiling by tiling array Methanococcus maripaludis S2 8 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42121/E-GEOD-42121.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42121/E-GEOD-42121.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42121/ E-GEOD-42115 Steady-state samples of Methanococcus maripaludis MM901 grown on formate-excess medium transcription profiling by tiling array Methanococcus maripaludis S2 4 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42115/E-GEOD-42115.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42115/E-GEOD-42115.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42115/ E-GEOD-41152 HPV-related methylation in Oropharyngeal squamous cell carcinomas (OPSCC) methylation profiling by array Homo sapiens 15 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41152/E-GEOD-41152.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41152/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41152/ E-GEOD-36056 Transcriptional profiling of intestinal samples from Atg4b knock-out mice during chemical-induced colitis transcription profiling by array Mus musculus 7 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36056/E-GEOD-36056.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36056/E-GEOD-36056.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36056/ E-GEOD-24271 Gene expression profiling of A549 cells that undergo cell death transcription profiling by array Homo sapiens 2 2013-09-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24271/E-GEOD-24271.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24271/E-GEOD-24271.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24271/ E-GEOD-50769 Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol) ChIP-seq, ChIP-chip by tiling array Drosophila melanogaster 13 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50769/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50769/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50769/ E-GEOD-50768 Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol) [NimbleGen Array data] ChIP-chip by tiling array Drosophila melanogaster 3 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50768/E-GEOD-50768.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50768/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50768/ E-GEOD-49941 Gene expression profiling in leiomyosarcomas and undifferentiated pleomorphic sarcomas: SRC as a new diagnostic marker transcription profiling by array Homo sapiens 44 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49941/E-GEOD-49941.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49941/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49941/ E-GEOD-49556 The effect of miR-294 and miR-181 on the transcriptome during OSK reprogramming of MEFs transcription profiling by array Mus musculus 15 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49556/E-GEOD-49556.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49556/ E-GEOD-49531 Gene expression data from lymphoblastoid cell lines from participants in the Genetics of Microangiopathic Brain Injury study transcription profiling by array Homo sapiens 883 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49531/E-GEOD-49531.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49531/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49531/ E-GEOD-49313 eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci ChIP-seq, RNA-seq of coding RNA Mus musculus 11 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49313/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49313/ E-GEOD-49043 Dampening of expression oscillations by synchronous regulation of a microRNA and its target RNA-seq of coding RNA Caenorhabditis elegans 71 2013-09-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49043/ E-GEOD-48581 Potential impact of microarray diagnosis of T cell-mediated rejection in kidney transplants: the INTERCOM study transcription profiling by array Homo sapiens 306 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48581/E-GEOD-48581.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48581/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48581/ E-GEOD-48373 Comparative transcriptomic profiling of liver tissue from lean (fa/+) female Zucker rats (~15 weeks old) fed a standard diet supplemented (0.5% w/w) with a rosemary extract enriched in carnosic acid (40% CA) transcription profiling by array Rattus norvegicus 14 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48373/E-GEOD-48373.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48373/E-GEOD-48373.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48373/ E-GEOD-48371 Transcriptional profiling of breast cancer stem cell xenografts and their metastatic derivatives transcription profiling by array Homo sapiens 14 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48371/E-GEOD-48371.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48371/E-GEOD-48371.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48371/ E-GEOD-48036 MicroRNA profiling of influenza A virus infected cells RNA-seq of non coding RNA Homo sapiens 2 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48036/E-GEOD-48036.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48036/ E-GEOD-47993 Genome wide expression analysis of FABP4 modulation in urothelial cancer cell UM-UC14 and UM-UC9 transcription profiling by array Homo sapiens 12 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47993/E-GEOD-47993.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47993/ E-GEOD-47992 Genome wide expression profiling of 30 urothelial cancer cells transcription profiling by array Homo sapiens 30 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47992/E-GEOD-47992.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47992/ E-GEOD-47937 Gene expression changes due to influenza virus induced miRNAs transcription profiling by array Homo sapiens 12 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47937/E-GEOD-47937.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47937/ E-GEOD-47410 Quantitative transcriptional changes associated with chlorosis severity in mosaic leaves of tobacco plants infected with the Cucumber mosaic virus transcription profiling by array Nicotiana tabacum 12 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47410/E-GEOD-47410.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47410/E-GEOD-47410.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47410/ E-GEOD-46227 Developmental equivalence of epiblast stem cells (EpiSCs) transcription profiling by array Mus musculus 112 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46227/E-GEOD-46227.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46227/ E-GEOD-46006 The Tight Junction Protein Claudin-2 Controls Mucosal Permeability, Immune Tolerance and Colitis in Mice transcription profiling by array Mus musculus 12 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46006/E-GEOD-46006.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46006/E-GEOD-46006.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46006/ E-GEOD-43401 MYBL2 Is a Sub-haploinsufficient Tumor Suppressor Gene in Myeloid Malignancy transcription profiling by array Homo sapiens 43 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43401/E-GEOD-43401.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43401/E-GEOD-43401.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43401/ E-GEOD-43400 MYBL2 Is a Sub-haploinsufficient Tumor Suppressor Gene in Myeloid Malignancy (RNAi) transcription profiling by array Homo sapiens 13 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43400/E-GEOD-43400.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43400/E-GEOD-43400.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43400/ E-GEOD-43399 MYBL2 Is a Sub-haploinsufficient Tumor Suppressor Gene in Myeloid Malignancy (RNA) transcription profiling by array Homo sapiens 30 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43399/E-GEOD-43399.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43399/E-GEOD-43399.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43399/ E-GEOD-41354 Distribution of insulator proteins CP190, dCTCF, Su(Hw) and Mod(mdg4)2.2 in Drosophila S2 cells in the presence or absence of dPARP inhibitor 3AB ChIP-seq Drosophila melanogaster 10 2013-09-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41354/ E-GEOD-39145 Multiple DNA repair pathways collectively protect against DNA damage-induced replicative aging. transcription profiling by array Caenorhabditis elegans 8 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39145/E-GEOD-39145.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39145/E-GEOD-39145.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39145/ E-GEOD-32515 Caspase-1 deficiency reduces intestinal and hepatic triglyceride-rich lipoprotein secretion transcription profiling by array Mus musculus 24 2013-09-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32515/E-GEOD-32515.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32515/E-GEOD-32515.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32515/ E-MEXP-3976 Transcription profiling by array of Candida albicans mutant for psg1 transcription profiling by array Candida albicans 4 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3976/E-MEXP-3976.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3976/E-MEXP-3976.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3976/ E-GEOD-50874 Methylation Profiling of Human Kidney Tubules methylation profiling by array Homo sapiens 85 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50874/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50874/ E-GEOD-50869 Different developmental trajectories of ovaries in Siberian hamsters raised in long and short day lengths transcription profiling by array Phodopus sungorus 16 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50869/E-GEOD-50869.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50869/E-GEOD-50869.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50869/ E-GEOD-50867 Identification of microRNA as novel circulating markers for presence of intracranial aneurysms transcription profiling by array Homo sapiens 12 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50867/E-GEOD-50867.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50867/E-GEOD-50867.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50867/ E-GEOD-50857 Expression data from Arabidopsis wild-type, sicy-192, and sicy-192 gun1-101 plants transcription profiling by array Arabidopsis thaliana 6 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50857/E-GEOD-50857.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50857/E-GEOD-50857.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50857/ E-GEOD-50853 Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites methylation profiling by high throughput sequencing, ChIP-chip by tiling array Homo sapiens 30 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50853/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50853/ E-GEOD-50852 Differences in DNA Methylation between Human Neuronal and Glial Cells are Concentrated in Enhancers and non-CpG Sites [Enhanced Reduced Representation Bisulfite Sequencing data] methylation profiling by high throughput sequencing Homo sapiens 6 2013-09-14 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50852/ E-GEOD-50850 Epithelial Ovarian Cancer Cells: Control vs. miR-506 Transfected transcription profiling by array Homo sapiens 3 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50850/E-GEOD-50850.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50850/E-GEOD-50850.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50850/ E-GEOD-50844 Characterization of Gene Expression in Rice Shoot and Root transcription profiling by array Oryza sativa Japonica Group 10 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50844/E-GEOD-50844.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50844/E-GEOD-50844.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50844/ E-GEOD-50633 Rapidly cleaving bovine embryos have a better developmental potential and a distinctive mRNA pattern transcription profiling by array Bos taurus 8 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50633/E-GEOD-50633.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50633/E-GEOD-50633.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50633/ E-GEOD-50532 Gene expression analysis of RB1 knockdown in bone in response to radiation transcription profiling by array Homo sapiens 36 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50532/E-GEOD-50532.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50532/E-GEOD-50532.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50532/ E-GEOD-44250 Gene expression analysis of rice seedling under potassium deprivation transcription profiling by array Oryza sativa Indica Group 12 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44250/E-GEOD-44250.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44250/E-GEOD-44250.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44250/ E-GEOD-41040 Gene expresion changes following knockdown of KDM4C in primary fibroblasts transcription profiling by array Homo sapiens 14 2013-09-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41040/E-GEOD-41040.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41040/E-GEOD-41040.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41040/ E-MTAB-1431 Transcription profiling by array of S. cerevisiae to investigate mutants in Rpb1 transcription profiling by array Saccharomyces cerevisiae 24 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1431/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1431/E-MTAB-1431.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1431/ E-MEXP-3323 Retinal vessel microarray transcription profiling by array Mus musculus, Rattus norvegicus 24 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3323/E-MEXP-3323.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3323/E-MEXP-3323.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3323/ E-GEOD-50865 Expression Data For BRD4 Inhibition transcription profiling by array Mus musculus 12 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50865/E-GEOD-50865.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50865/E-GEOD-50865.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50865/ E-GEOD-50837 DNA methylation profiling in X;autosome translocations supports a role for L1 repeats in the spread of X chromosome inactivation methylation profiling by array Homo sapiens 8 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50837/E-GEOD-50837.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50837/ E-GEOD-50824 The identification and tumorigenecity of neuronal progenitors in developing cerebellum transcription profiling by array Mus musculus 19 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50824/E-GEOD-50824.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50824/E-GEOD-50824.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50824/ E-GEOD-50819 modENCODE_White Lab: genome-wide ChIP-chip and ChIP-seq data [D. yakuba H3K27me3] ChIP-seq Drosophila yakuba 3 2013-09-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50819/ E-GEOD-50814 Human exosomal placenta-specific miRNAs modulate expression of target genes in maternal immune cells during pregnancy transcription profiling by array Homo sapiens 2 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50814/E-GEOD-50814.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50814/E-GEOD-50814.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50814/ E-GEOD-50812 Aiolos regulated genes in A549, lung carcinoma cells transcription profiling by array Homo sapiens 3 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50812/E-GEOD-50812.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50812/E-GEOD-50812.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50812/ E-GEOD-50806 Specification of innate type-2 lymphocytes by the transcriptional determinant Gfi1 ChIP-seq Mus musculus 2 2013-09-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50806/ E-GEOD-50804 Effects of gentamycin on gene expression of kidney in SD rats transcription profiling by array Rattus norvegicus 36 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50804/E-GEOD-50804.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50804/E-GEOD-50804.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50804/ E-GEOD-50798 Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites [methylation array] ChIP-chip by tiling array Homo sapiens 24 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50798/E-GEOD-50798.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50798/ E-GEOD-50214 Gene expression profiles in group G streptococci during infection and under various stress conditions transcription profiling by array Streptococcus dysgalactiae subsp. equisimilis 9 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50214/E-GEOD-50214.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50214/E-GEOD-50214.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50214/ E-GEOD-49868 Molecular Profiling of glucokinase-expressing cells from mouse hypothalamus transcription profiling by array Mus musculus 6 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49868/E-GEOD-49868.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49868/ E-GEOD-48833 Identification and functional analysis of SHISA2 overexpressed in high-grade prostate cancer cells. transcription profiling by array Homo sapiens 2 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48833/E-GEOD-48833.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48833/E-GEOD-48833.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48833/ E-GEOD-47629 Modulation of enhancer looping and differential gene targeting by Epstein-Barr virus transcription factors directs epigenetic reprogramming ChIP-seq Homo sapiens 3 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47629/E-GEOD-47629.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47629/ E-GEOD-46599 Genome-wide analysis of interferon-stimulated genes in primary cells and immortalized cell lines transcription profiling by array Homo sapiens 48 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46599/E-GEOD-46599.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46599/ E-GEOD-45285 Regulation of constitutive and alternative splicing by PRMT5 reveals a role for Mdm4 pre-mRNA in sensing defects in the spliceosomal machinery transcription profiling by array, RNA-seq of coding RNA Mus musculus 20 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45285/E-GEOD-45285.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45285/ E-GEOD-45284 Regulation of constitutive and alternative splicing by PRMT5 reveals a role for Mdm4 pre-mRNA in sensing defects in the spliceosomal machinery (RNA-Seq) RNA-seq of coding RNA Mus musculus 12 2013-09-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45284/ E-GEOD-45269 Regulation of constitutive and alternative splicing by PRMT5 reveals a role for Mdm4 pre-mRNA in sensing defects in the spliceosomal machinery (BeadChip) transcription profiling by array Mus musculus 8 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45269/E-GEOD-45269.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45269/ E-GEOD-44856 Expression data from Human Umbilical Vein Endothelial Cells (HUVECs) exposed to WT and V30M transthyretin (TTR) transcription profiling by array Homo sapiens 6 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44856/E-GEOD-44856.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44856/E-GEOD-44856.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44856/ E-GEOD-43120 RNAPII CTD dataset transcription profiling by array Saccharomyces cerevisiae 24 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43120/E-GEOD-43120.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43120/E-GEOD-43120.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43120/ E-GEOD-41819 Active STAT5 in CD8 T cells ChIP-seq, transcription profiling by array Mus musculus 21 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41819/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41819/E-GEOD-41819.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41819/ E-GEOD-41818 Active STAT5 in CD8 T cells imprints a T-Bet-dependent Tc-1 program with repressed IL-6/ TGFb1 signaling leading to enhanced anti-tumor responses ChIP-seq Mus musculus 3 2013-09-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41818/ E-GEOD-40763 Frizzled6 deficiency disrupts the differentiation process of nail development transcription profiling by array Mus musculus 18 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40763/E-GEOD-40763.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40763/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40763/ E-GEOD-34230 Transcription profiles of cumulus cells from GnRH agonists and GnRH antagonists treated oocytes at different maturity stages transcription profiling by array Homo sapiens 46 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34230/E-GEOD-34230.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34230/E-GEOD-34230.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34230/ E-GEOD-26945 Optimized CD8 effector TL transcription profiling by array Mus musculus 19 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26945/E-GEOD-26945.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26945/E-GEOD-26945.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26945/ E-GEOD-9160 Gene Expression Across the Human Growth Plate transcription profiling by array Homo sapiens 10 2013-09-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-9160/E-GEOD-9160.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-9160/E-GEOD-9160.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-9160/ E-MTAB-1191 Transcription profiling by array of prostates from PAP knockout and wild type mice transcription profiling by array Mus musculus 19 2013-09-12 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1191/E-MTAB-1191.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1191/ E-MTAB-1126 RNA-seq of coding RNA of Pichia pastoris GS115 to determine the effect of inducing heterologous expression of human lysozyme (HuLy) variants RNA-seq of coding RNA Pichia pastoris 9 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1126/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1126/ E-GEOD-50828 DNA microarray analysis of E.coli K12 MG1655 exposed to prolonged stationary phase transcription profiling by array Escherichia coli 6 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50828/E-GEOD-50828.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50828/E-GEOD-50828.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50828/ E-GEOD-50801 ER71/ETV2-mediated direct reprogramming of human dermal fibroblasts (HDFs) into endothelial-like cells transcription profiling by array Homo sapiens 12 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50801/E-GEOD-50801.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50801/E-GEOD-50801.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50801/ E-GEOD-50796 Gene Expression Changes Between Patent and Fused Cranial Sutures in a Nonsyndromic Craniosynostosis Population transcription profiling by array Homo sapiens 14 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50796/E-GEOD-50796.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50796/ E-GEOD-50787 Community composition of bacteria involved in fixed nitrogen loss in the water column of two major oxygen minimum zones in the ocean other marine metagenome, synthetic construct 25 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50787/E-GEOD-50787.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50787/E-GEOD-50787.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50787/ E-GEOD-50784 Gene expression of the human trabecular meshwork (TM) of the eye transcription profiling by array Homo sapiens 2 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50784/E-GEOD-50784.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50784/E-GEOD-50784.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50784/ E-GEOD-50783 LncRNAs Expression in Preeclampsia Placenta Reveals the Potential Role of LncRNAs Contributing to Preeclampsia Pathogenesis transcription profiling by array Homo sapiens 11 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50783/E-GEOD-50783.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50783/E-GEOD-50783.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50783/ E-GEOD-50773 Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression ChIP-seq, RNA-seq of coding RNA , Drosophila melanogaster, Drosophila pseudoobscura, Drosophila virilis, Drosophila yakuba 42 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50773/E-GEOD-50773.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50773/ E-GEOD-50770 Transcriptome analysis reveals crosstalk of responsive genes to multiple abiotic stresses in cotton (Gossypium hirsutum L.) transcription profiling by array Gossypium hirsutum 17 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50770/E-GEOD-50770.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50770/E-GEOD-50770.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50770/ E-GEOD-50766 Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression (part 1) RNA-seq of coding RNA , Drosophila melanogaster, Drosophila pseudoobscura, Drosophila virilis, Drosophila yakuba 26 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50766/ E-GEOD-50756 Cyclophilin B supports the survuval of glioblastoma multiforme cells transcription profiling by array Homo sapiens 6 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50756/E-GEOD-50756.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50756/ E-GEOD-50029 Long-range chromatin contacts reveal a role for the pluripotency and Polycomb networks in genome organization other Mus musculus 201 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50029/ E-GEOD-49865 Bacterial Argonaute samples the transcriptome to identify foreign DNA ChIP-seq, RNA-seq of coding RNA, RNA-seq of non coding RNA Escherichia coli BL21(DE3), Rhodobacter sphaeroides ATCC 17023 16 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49865/ E-GEOD-49767 Deterministic direct reprogramming of somatic cells to pluripotency ChIP-seq, transcription profiling by array Mus musculus 50 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49767/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49767/E-GEOD-49767.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49767/ E-GEOD-49766 Deterministic direct reprogramming of somatic cells to pluripotency [ChIP-Seq] ChIP-seq Mus musculus 40 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49766/ E-GEOD-48541 Prostaglandin dose response on hematopoietic stem cells (25 & 37 deg C) transcription profiling by array Homo sapiens 9 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48541/E-GEOD-48541.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48541/E-GEOD-48541.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48541/ E-GEOD-48364 Transcriptional profiles by deep sequencing (RNA-seq) of in vivo-generated mouse iPSCs, in vitro-generated mouse iPSCs, and mouse ESCs RNA-seq of coding RNA Mus musculus 14 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48364/ E-GEOD-48168 The Small RNA Profile of Silkworm Hemolymph Using Deep Sequencing RNA-seq of coding RNA Bombyx mori 2 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48168/E-GEOD-48168.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48168/ E-GEOD-46714 Prostaglandin duration required to elicit maximum response on hematopoietic stem cells transcription profiling by array Homo sapiens 6 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46714/E-GEOD-46714.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46714/E-GEOD-46714.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46714/ E-GEOD-46634 Prostaglandin dose response on hematopoietic stem cells (4 deg C) transcription profiling by array Homo sapiens 4 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46634/E-GEOD-46634.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46634/E-GEOD-46634.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46634/ E-GEOD-46569 Prostaglandin-modulated umbilical cord blood hematopoietic stem cells transcription profiling by array Homo sapiens 10 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46569/E-GEOD-46569.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46569/E-GEOD-46569.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46569/ E-GEOD-45352 Deterministic direct reprogramming of somatic cells to pluripotency [Microarray/Expression] transcription profiling by array Mus musculus 10 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45352/E-GEOD-45352.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45352/E-GEOD-45352.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45352/ E-GEOD-45236 affy_rose_2012_06: RhDiF1 knockdown transcription profiling by array Rosa chinensis 8 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45236/E-GEOD-45236.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45236/E-GEOD-45236.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45236/ E-GEOD-43205 The Condition-Dependent Transcriptional Landscape of Burkholderia pseudomallei transcription profiling by tiling array Burkholderia pseudomallei, Burkholderia pseudomallei Bp22, Burkholderia pseudomallei K96243 332 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43205/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43205/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43205/ E-GEOD-42375 chromatin reprogramming and differential gene expression in a model of EMT (spheroid A549 treated with TGF/TNF) ChIP-seq, transcription profiling by array Homo sapiens 44 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42375/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42375/E-GEOD-42375.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42375/ E-GEOD-42374 Histone modification analysis in TGFbeta/TNFalpha treated A549 spheroid cultures ChIP-seq Homo sapiens 36 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42374/ E-GEOD-42373 Gene expression analysis in TGFbeta/TNFalpha treated A549 spheroid cultures transcription profiling by array Homo sapiens 8 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42373/E-GEOD-42373.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42373/E-GEOD-42373.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42373/ E-GEOD-40975 Genome-wide measurement of Nkx-6.1 in mouse islets. ChIP-seq Mus musculus 2 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40975/ E-GEOD-40470 Identification of Nkx6.1 regulated genes in mature pancreatic islets. transcription profiling by array Mus musculus 6 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40470/E-GEOD-40470.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40470/E-GEOD-40470.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40470/ E-GEOD-24096 Gene expression profile in the livers of insulin-resistant mice treated with all-trans retinoic acid transcription profiling by array Mus musculus 5 2013-09-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24096/E-GEOD-24096.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24096/E-GEOD-24096.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24096/ E-ERAD-164 DNA methylation and gene expression in Polistes methylation profiling by high throughput sequencing, RNA-seq of coding RNA Polistes canadensis 25 2013-09-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-164/ E-MEXP-3746 Transcription profiling by array of human aortic endothelial cells after treatment with IFN-alpha in order to determine whether IFN-alpha can directly activate the endothelium transcription profiling by array Homo sapiens 4 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3746/E-MEXP-3746.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3746/E-MEXP-3746.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3746/ E-GEOD-50753 microRNA profiling of lung adenocarcinomas, induced by cRaf overexpression in lung epithelium transcription profiling by array Mus musculus 42 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50753/E-GEOD-50753.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50753/E-GEOD-50753.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50753/ E-GEOD-50752 microRNA profiling of lung adenocarcinomas, induced by cRaf overexpression in lung epithelium (Agilent) transcription profiling by array Mus musculus 24 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50752/E-GEOD-50752.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50752/E-GEOD-50752.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50752/ E-GEOD-50748 microRNA profiling of lung adenocarcinomas, induced by cRaf overexpression in lung epithelium (Affymetrix) transcription profiling by array Mus musculus 18 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50748/E-GEOD-50748.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50748/E-GEOD-50748.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50748/ E-GEOD-50746 Time dependent changes of gene expression in surgical specimen of colorectal cancer transcription profiling by array Homo sapiens 28 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50746/E-GEOD-50746.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50746/E-GEOD-50746.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50746/ E-GEOD-50742 Effect of miR-144 and miR-451 expression on lung epithelial cell responses to influenza infection at 1 and 18 hours. transcription profiling by array Mus musculus 16 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50742/E-GEOD-50742.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50742/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50742/ E-GEOD-50741 Transcriptional analysis of sweet orange in response to TAL effector-dependent infection transcription profiling by array Citrus sinensis 6 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50741/E-GEOD-50741.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50741/E-GEOD-50741.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50741/ E-GEOD-50729 The polycomb protein Ezh2 regulates differentiation and plasticity of CD4 T helper type-1 and type-2 cells. transcription profiling by array Mus musculus 6 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50729/E-GEOD-50729.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50729/E-GEOD-50729.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50729/ E-GEOD-50728 Expression data from Saccharomyces cerevisiae and Saccharomyces pastorianus var. carlsbergensis transcription profiling by array Saccharomyces cerevisiae, Saccharomyces pastorianus 48 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50728/E-GEOD-50728.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50728/E-GEOD-50728.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50728/ E-GEOD-50722 Effect of tumor conditioned medium of human mesenchymal stem cell (MSCs) transcription profiling by array Homo sapiens 2 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50722/E-GEOD-50722.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50722/E-GEOD-50722.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50722/ E-GEOD-50714 CD5 alters gene transcription in Jok-1 B cells transcription profiling by array Homo sapiens 9 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50714/E-GEOD-50714.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50714/E-GEOD-50714.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50714/ E-GEOD-50696 Differential expression of Dictyostelium discoideum AX2 upon infection with wt L. pneumophila JR32 vs. uninfected 24h p.i. (comparison experiment) transcription profiling by array Dictyostelium discoideum 19 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50696/E-GEOD-50696.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50696/E-GEOD-50696.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50696/ E-GEOD-48493 Supression of genetic recombination in the pseudoautosomal region and at subtelomeres in mice with a hypomorphic spo11 allele other, DNA-seq Mus musculus 9 2013-09-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48493/ E-GEOD-46568 Expression data from mouse liver tissue from SKH:QS mice treated with 68ZnO sunscreens transcription profiling by array Mus musculus 46 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46568/E-GEOD-46568.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46568/E-GEOD-46568.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46568/ E-GEOD-45322 Expression data from human olfactory neurosphere derived cells (hONS) established from adult donors treated with coated and uncoated ZnO nanoparticles transcription profiling by array Homo sapiens 40 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45322/E-GEOD-45322.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45322/E-GEOD-45322.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45322/ E-GEOD-44783 Expression data from CD-1 mouse liver samples obtained from in-vivo treatment with genotoxic carcinogens, non-genotoxic carcinogens or non-hepatocarcinogens. transcription profiling by array Mus musculus 450 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44783/E-GEOD-44783.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44783/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44783/ E-GEOD-44201 Gene expression in human peripheral blood 48 hours after exposure to ionizing radiation transcription profiling by array Homo sapiens 75 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44201/E-GEOD-44201.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44201/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44201/ E-GEOD-43928 Expression data from TNF-stimulated mouse glomeruli transcription profiling by array Mus musculus 12 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43928/E-GEOD-43928.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43928/E-GEOD-43928.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43928/ E-GEOD-42216 Gene expression analysis of the immortalized human endothelial cell lines HMEC-1 and TIME transcription profiling by array Homo sapiens 8 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42216/E-GEOD-42216.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42216/E-GEOD-42216.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42216/ E-GEOD-40823 RNA-Seq profiling unveils a non-canonical Wnt signalling signature in pancreas versus liver fate decision RNA-seq of coding RNA Mus musculus 5 2013-09-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40823/ E-GEOD-39897 Expression data for mouse embryogenesis from oocyte to newborn transcription profiling by array Mus musculus 36 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39897/E-GEOD-39897.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39897/E-GEOD-39897.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39897/ E-GEOD-35320 microRNAs distinguish cytogenetic subgroups in pediatric AML and contribute to complex regulatory networks in AML-relevant pathways other, transcription profiling by array Homo sapiens, synthetic construct 182 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35320/E-GEOD-35320.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35320/E-GEOD-35320.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35320/ E-GEOD-25900 Hepatocellular carcinomas (HCC) in mice transduced in utero with feline immunodeficiency virus-based vectors (CGH) comparative genomic hybridization by array Mus musculus 6 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-25900/E-GEOD-25900.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-25900/E-GEOD-25900.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-25900/ E-GEOD-19306 Hepatocellular carcinomas (HCC) in mice transduced in utero with feline immunodeficiency virus-based vectors (expression) transcription profiling by array Mus musculus 14 2013-09-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19306/E-GEOD-19306.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19306/E-GEOD-19306.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19306/ E-MTAB-1697 Transcription profiling by array of Anopheles gambiae male and female steroidogenic tissues using the detox chip to study genes from families associated with metabolic-based insecticide resistance transcription profiling by array Anopheles gambiae 12 2013-09-10 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1697/E-MTAB-1697.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1697/ E-MTAB-1549 MicroRNA profiling by array of aging mouse brain samples from animals fed on the normal chow diet, or a diet with/without olive oil phenols microRNA profiling by array Mus musculus 24 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1549/E-MTAB-1549.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1549/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1549/ E-MTAB-1530 Transcription profiling by array of aging mouse brain samples from animals fed a diet with or without olive oil phenols transcription profiling by array Mus musculus 20 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1530/E-MTAB-1530.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1530/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1530/ E-MEXP-3894 Transcription profiling by array of wild type and pBClin15 mutant Bacillus cereus ATCC 14579 in response to different duration of quinolone-induced stress transcription profiling by array Bacillus cereus 11 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3894/E-MEXP-3894.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3894/E-MEXP-3894.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3894/ E-GEOD-50739 Tgif1 regulates quiescence and self-renewal signaling pathways of hematopoietic stem cells (HSCs) RNA-seq of coding RNA Mus musculus 6 2013-09-10 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50739/ E-GEOD-50710 LncRNA/mRNA expression profiling for 20 human samples transcription profiling by array Homo sapiens 20 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50710/E-GEOD-50710.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50710/E-GEOD-50710.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50710/ E-GEOD-50705 Xenoestrogen Dose-dependent Transcriptomal Changes in MCF-7 Human Breast Cancer Cells transcription profiling by array Homo sapiens 351 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50705/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50705/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50705/ E-GEOD-50704 Transcriptome-guided functional analyses reveal novel biological properties and regulatory heirarchy of human embryonic stem cell derived ventricular cardiomyocytes. transcription profiling by array Homo sapiens 10 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50704/E-GEOD-50704.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50704/ E-GEOD-50619 Lipopolysaccharide-induced microRNA-146a targets CARD10 and involves in angiogenesis of human umbilical vein endothelial cells transcription profiling by array Homo sapiens 2 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50619/E-GEOD-50619.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50619/E-GEOD-50619.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50619/ E-GEOD-50521 Limited effects of an eIF2?S51A allele on neurological impairments in the 5xFAD mouse model of Alzheimer?s disease transcription profiling by array Mus musculus 12 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50521/E-GEOD-50521.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50521/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50521/ E-GEOD-49866 Plants encode a general siRNA suppressor that is induced and suppressed by viruses RNA-seq of non coding RNA Arabidopsis thaliana 10 2013-09-10 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49866/ E-GEOD-46354 The expression analyses of trisomy 2L compared with normal RNA-seq of coding RNA Drosophila melanogaster 4 2013-09-10 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46354/ E-GEOD-45345 bf_vs_f-Comparative Arabidopsis Transcriptome -Sequencing transcription profiling by array Arabidopsis thaliana 4 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45345/E-GEOD-45345.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45345/E-GEOD-45345.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45345/ E-GEOD-45259 Dynamic profile of gene expression in rice flag leaf under high temperature transcription profiling by array Oryza sativa 12 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45259/E-GEOD-45259.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45259/E-GEOD-45259.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45259/ E-GEOD-44262 Beta cell 5?-shifted isomiRs are candidate regulatory hubs in type 2 diabetes RNA-seq of non coding RNA Mus musculus 3 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44262/E-GEOD-44262.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44262/ E-GEOD-44228 Differential Gene Expression in HIV-Infected Individuals Following ART. transcription profiling by array Homo sapiens 72 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44228/E-GEOD-44228.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44228/E-GEOD-44228.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44228/ E-GEOD-37095 Expression data from Escherichia coli O157:H7, strain EDL933, cultivated in caecal content of rats associated with the human intestinal microbiota transcription profiling by array Escherichia coli O157:H7 str. EDL933 6 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37095/E-GEOD-37095.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37095/E-GEOD-37095.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37095/ E-GEOD-24068 Gene expression from SCID-hu mice treated with saline (control) or intermittent PTH transcription profiling by array Homo sapiens 10 2013-09-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24068/E-GEOD-24068.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24068/E-GEOD-24068.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24068/ E-MTAB-1627 RNA-seq of coding RNA of human tumour Calu6 and LoVo xenografts with the VEGFR tyrosine kinase inhibitor cediranib to investigate mRNA expression changes induced by treatment RNA-seq of coding RNA Homo sapiens 6 2013-09-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1627/ E-GEOD-50690 Analysis of RNA quantitation in formaldehyde-fixed cells transcription profiling by array Homo sapiens 46 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50690/E-GEOD-50690.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50690/ E-GEOD-50080 Deep sequencing reveals increased DNA methylation in chronic rat epilepsy methylation profiling by high throughput sequencing, RNA-seq of coding RNA Rattus norvegicus 23 2013-09-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50080/ E-GEOD-50079 Deep sequencing reveals increased DNA methylation in chronic rat epilepsy (mRNA-seq) RNA-seq of coding RNA Rattus norvegicus 9 2013-09-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50079/ E-GEOD-50077 Deep sequencing reveals increased DNA methylation in chronic rat epilepsy (MBD-seq) methylation profiling by high throughput sequencing Rattus norvegicus 14 2013-09-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50077/ E-GEOD-49667 DNA methylation differences between human regulatory T cells and conventional T cells methylation profiling by array Homo sapiens 10 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49667/E-GEOD-49667.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49667/ E-GEOD-47486 subventricular zone progenitors healthy vs. Experimental Autoimmune Encephalomyelitis mice transcription profiling by array Mus musculus 4 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47486/E-GEOD-47486.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47486/E-GEOD-47486.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47486/ E-GEOD-46213 Role of RelA:CBP/p300 interaction on RelA-activated genes RNA-seq of coding RNA Mus musculus 18 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46213/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46213/ E-GEOD-46044 A compendium of hematopoietic regulators, chromatin modifiers and basal transcription factors occupy CBF?-MYH11/RUNX1 target genes ChIP-seq, RNA-seq of coding RNA Homo sapiens 27 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46044/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46044/ E-GEOD-45696 Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin transcription profiling by array, RNA-seq of coding RNA Schistosoma mansoni 18 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45696/E-GEOD-45696.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45696/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45696/ E-GEOD-45628 Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin [SuperSAGE] RNA-seq of coding RNA Schistosoma mansoni 6 2013-09-09 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45628/E-GEOD-45628.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45628/ E-GEOD-45607 Maternal folic acid supplementation alters gene expression in the offspring brain transcription profiling by array Mus musculus 12 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45607/E-GEOD-45607.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45607/E-GEOD-45607.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45607/ E-GEOD-44193 Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, such as follistatin [Microarray] transcription profiling by array Schistosoma mansoni 12 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44193/E-GEOD-44193.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44193/E-GEOD-44193.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44193/ E-GEOD-43495 Expression data of mammary epithelial cells during the epithelial-mesenchymal transition transcription profiling by array Homo sapiens 15 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43495/E-GEOD-43495.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43495/ E-GEOD-43222 Gene expression profiles in group G streptococci during infection transcription profiling by array Streptococcus dysgalactiae subsp. equisimilis 9 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43222/E-GEOD-43222.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43222/E-GEOD-43222.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43222/ E-GEOD-41138 Profiling microRNA expression in bovine alveolar macrophages using RNA-seq RNA-seq of non coding RNA Bos taurus 8 2013-09-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41138/ E-GEOD-28915 Toxicogenomic Responses to Inorganic and Organic Mercury in Caenorhabditis elegans transcription profiling by array Caenorhabditis elegans 24 2013-09-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28915/E-GEOD-28915.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28915/E-GEOD-28915.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28915/ E-MTAB-1794 Amplicon sequencing-based profiling of formalin fixed paraffin embedded metastatic melanoma tissue samples genotyping by high throughput sequencing Homo sapiens 16 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1794/E-MTAB-1794.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1794/ E-MTAB-1753 Comparative genomic hybridization by array of early passage melanoma cell lines (LM-MEL-series) and single-cell sub-clone of these cell lines to study clonal heterogeneity in melanoma transcription profiling by array, comparative genomic hybridization by array Homo sapiens 36 2013-09-08 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1753/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1753/ E-MTAB-1585 Transcriptional profiling of 7SK knockdown in mouse embryonic stem cells RNA-seq of coding RNA, RNA-seq of non coding RNA Mus musculus 14 2013-09-08 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1585/ E-MEXP-3754 Transcription profiling by array of A. thaliana wild type plants to investigate local stress responses (heat, high light or wounding) transcription profiling by array Arabidopsis thaliana 36 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3754/E-MEXP-3754.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3754/E-MEXP-3754.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3754/ E-GEOD-50449 Chromosome conformation capture-on-chip analysis of long-range cis interactions of the SOX9 promoter other Homo sapiens 6 2013-09-08 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50449/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50449/ E-GEOD-47496 Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: sorted DP thymocytes) RNA-seq of coding RNA Mus musculus 6 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47496/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47496/ E-GEOD-46845 Gene expression analysis of late exponential vs. stationary phase cultures using a custom designed Pseudo-nitzschia multiseries (Ps-n) cDNA microarray transcription profiling by array Pseudo-nitzschia multiseries 3 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46845/E-GEOD-46845.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46845/E-GEOD-46845.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46845/ E-GEOD-46296 The effect of endosulfan on gene expression in Homarus americanus using an oligonucleotide microarray transcription profiling by array Homarus americanus 36 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46296/E-GEOD-46296.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46296/E-GEOD-46296.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46296/ E-GEOD-38842 Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: sorted proB cell Hardy Fractions B and C+C') RNA-seq of coding RNA Mus musculus 6 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38842/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38842/ E-GEOD-38841 Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: BCR-ABL transformed in vitro cell culture cells) RNA-seq of coding RNA Mus musculus 6 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38841/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38841/ E-GEOD-36942 Genomic profiling of oral squamous cell carcinoma by array-based comparative genomic hybridization comparative genomic hybridization by array Homo sapiens 42 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36942/E-GEOD-36942.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36942/E-GEOD-36942.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36942/ E-GEOD-33693 Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros ChIP-seq, RNA-seq of coding RNA Mus musculus 31 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33693/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33693/ E-GEOD-33679 Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (ChIP-seq: Thymocytes) ChIP-seq Mus musculus 6 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33679/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33679/ E-GEOD-32190 Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: Thymocytes) RNA-seq of coding RNA Mus musculus 7 2013-09-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32190/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32190/ E-GEOD-50682 Genome-wide transcription profile of CpG-activated peritoneal macrophages transcription profiling by array Mus musculus 6 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50682/E-GEOD-50682.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50682/E-GEOD-50682.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50682/ E-GEOD-50680 Dictyostelium transcriptional host cell response upon infection with Legionella transcription profiling by array Dictyostelium discoideum 27 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50680/E-GEOD-50680.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50680/E-GEOD-50680.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50680/ E-GEOD-50664 Gene expression profiles in rat lung following intratracheal instillation with single-wall carbon nanotubes (SWCNTs) transcription profiling by array Rattus norvegicus 21 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50664/E-GEOD-50664.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50664/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50664/ E-GEOD-50661 Pathway-based integrative analysis reveals a key role for the hexosamine biosynthetic pathway in prostate cancer progression transcription profiling by array Homo sapiens 16 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50661/E-GEOD-50661.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50661/E-GEOD-50661.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50661/ E-GEOD-50656 Wild type cells in different times after transfer to no phosphate medium transcription profiling by array Saccharomyces cerevisiae 16 2013-09-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50656/ E-GEOD-50655 Steady state chemostat cultures grown in different dilution rates and levels of phosphate feeding transcription profiling by array Saccharomyces cerevisiae 8 2013-09-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50655/ E-GEOD-50654 Commitment to the phosphate starvation response after replenishment of phosphate transcription profiling by array Saccharomyces cerevisiae 10 2013-09-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50654/ E-GEOD-50651 Differential expression of Dictyostelium discoideum AX2 upon infection with wt L. pneumophila JR32 vs. L. hackeliae 24h p.i. transcription profiling by array Dictyostelium discoideum 4 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50651/E-GEOD-50651.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50651/E-GEOD-50651.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50651/ E-GEOD-50564 IMPACT: Unraveling intracellular signal transduction and pathway crosstalk by exploring pathway landscape transcription profiling by array, unknown experiment type Homo sapiens 12 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50564/E-GEOD-50564.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50564/E-GEOD-50564.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50564/ E-GEOD-50536 Differential expression of Dictyostelium discoideum AX2 upon infection with wt L. pneumophila JR32 vs. the L. pneumophila delta DotA mutant 24h p.i. transcription profiling by array Dictyostelium discoideum 4 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50536/E-GEOD-50536.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50536/E-GEOD-50536.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50536/ E-GEOD-47361 Genome-wide DNA methylation profiling in cultured eutopic and ectopic endometrial stromal cells transcription profiling by array, methylation profiling by array Homo sapiens 18 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47361/E-GEOD-47361.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47361/E-GEOD-47361.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47361/ E-GEOD-47360 Genome-wide DNA methylation profiling in cultured eutopic and ectopic endometrial stromal cells (expression) transcription profiling by array Homo sapiens 9 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47360/E-GEOD-47360.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47360/E-GEOD-47360.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47360/ E-GEOD-47359 Genome-wide DNA methylation profiling in cultured eutopic and ectopic endometrial stromal cells (methylation) methylation profiling by array Homo sapiens 9 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47359/E-GEOD-47359.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47359/ E-GEOD-44986 Gene Regulation in Bob1-/- and miR-146a-/- Murine Pre-B Cells transcription profiling by array Mus musculus 8 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44986/E-GEOD-44986.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44986/E-GEOD-44986.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44986/ E-GEOD-44675 Gaucher Disease: Transcriptome Analyses Using Microarray or mRNA Sequencing in a Mouse Model Treated with velaglucerase alfa or imiglucerase transcription profiling by array, RNA-seq of coding RNA Mus musculus 110 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44675/E-GEOD-44675.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44675/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44675/ E-GEOD-44674 Gaucher Disease: Transcriptome Analyses Using Microarray or mRNA Sequencing in a Mouse Model Treated with velaglucerase alfa or imiglucerase [RNA-Seq] RNA-seq of coding RNA Mus musculus 55 2013-09-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44674/ E-GEOD-44647 Gaucher Disease: Transcriptome Analyses Using Microarray or mRNA Sequencing in a Mouse Model Treated with velaglucerase alfa or imiglucerase [Affymetrix] transcription profiling by array Mus musculus 55 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44647/E-GEOD-44647.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44647/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44647/ E-GEOD-44641 Differential Molecular Effects of Imiglucerase and Velaglucerase Alfa in Gaucher Disease Mice transcription profiling by array, RNA-seq of coding RNA Mus musculus 48 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44641/E-GEOD-44641.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44641/E-GEOD-44641.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44641/ E-GEOD-44640 Differential Molecular Effects of Imiglucerase and Velaglucerase Alfa in Gaucher Disease Mice [RNA-Seq] RNA-seq of coding RNA Mus musculus 24 2013-09-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44640/ E-GEOD-44569 Differential Molecular Effects of Imiglucerase and Velaglucerase Alfa in Gaucher Disease Mice [Affymetrix] transcription profiling by array Mus musculus 24 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44569/E-GEOD-44569.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44569/E-GEOD-44569.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44569/ E-GEOD-40834 Array comparative genomic hybridization data from 313 CLL specimens to study outcome associations comparative genomic hybridization by array Homo sapiens 313 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40834/E-GEOD-40834.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40834/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40834/ E-GEOD-40761 Upregulated Hedgehog Signaling Promotes Zebrafish CNS Tumorigenesis transcription profiling by array Danio rerio 8 2013-09-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40761/E-GEOD-40761.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40761/E-GEOD-40761.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40761/ E-MTAB-1854 Transcription profiling by array of gills from killfish Lucania parva and Lucania goodei in a hyper-osmotic environment over a time-course to study possible mechanisms for evolutionary divergence of adaptive osmotic physiologies among taxa transcription profiling by array, comparative genomic hybridization by array Lucania goodei, Lucania parva 50 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1854/E-MTAB-1854.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1854/ E-MTAB-1793 Transcription profiling by array of vdh1 mutant and wild type samples of soilborne fungus Verticillium dahliae transcription profiling by array Verticillium dahliae 12 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1793/E-MTAB-1793.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1793/E-MTAB-1793.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1793/ E-MTAB-1581 RNA-seq of coding RNA from soilborne fungus Verticillium dahliae cultures which were or were not microsclerotia(MS)-producing RNA-seq of coding RNA Verticillium dahliae 6 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1581/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1581/ E-GEOD-50644 Analysis of miRNA expression in lung (CC10) VEGF transgenic mice and their wild type litters transcription profiling by array Mus musculus 1 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50644/E-GEOD-50644.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50644/E-GEOD-50644.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50644/ E-GEOD-50640 Comparative gene expression analysis of the human periodontal ligament in deciduous and permanent teeth transcription profiling by array Homo sapiens 6 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50640/E-GEOD-50640.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50640/E-GEOD-50640.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50640/ E-GEOD-50638 expression data from Zbtb17 cKO mouse heart after pressure overload transcription profiling by array Mus musculus 16 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50638/E-GEOD-50638.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50638/E-GEOD-50638.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50638/ E-GEOD-50637 Transcriptional regulation patterns revealed by high-resolution chromatin immunoprecipitation during cardiac hypertrophy ChIP-seq Mus musculus 7 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50637/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50637/ E-GEOD-50634 Gene expression profiles in individuals with asymptomatic infections against cognate household members with dengue fever transcription profiling by array Homo sapiens 29 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50634/E-GEOD-50634.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50634/E-GEOD-50634.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50634/ E-GEOD-50631 Human epidermal stem cell function is regulated by circadian oscillations transcription profiling by array Homo sapiens 60 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50631/E-GEOD-50631.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50631/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50631/ E-GEOD-50618 Genome-wide expression profiling of 30 uM curcumin treatment of immortalized prostate fibroblasts (PShTert-AR) transcription profiling by array Homo sapiens 5 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50618/E-GEOD-50618.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50618/E-GEOD-50618.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50618/ E-GEOD-50617 Expression data from mouse CD3+ T-cells from WT and KLF13 KO mice transcription profiling by array Mus musculus 10 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50617/E-GEOD-50617.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50617/E-GEOD-50617.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50617/ E-GEOD-50613 Genomic profiling of type-1 adult diabetic and aged normoglycemic mice liver transcription profiling by array Mus musculus 12 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50613/E-GEOD-50613.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50613/ E-GEOD-50607 Gestational food-restriction but not nicotine exposure regulates gene expression in the striatum of adolescent rats transcription profiling by array Rattus norvegicus 25 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50607/E-GEOD-50607.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50607/E-GEOD-50607.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50607/ E-GEOD-50606 Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach perspective of human cancers. transcription profiling by array Mus musculus 56 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50606/E-GEOD-50606.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50606/E-GEOD-50606.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50606/ E-GEOD-50605 A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility [Transcriptome data] transcription profiling by array Homo sapiens 3 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50605/E-GEOD-50605.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50605/E-GEOD-50605.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50605/ E-GEOD-50604 Identification and characterization of FGF2-dependent mRNA:microRNA networks during lens fiber cell differentiation transcription profiling by array Rattus norvegicus 10 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50604/E-GEOD-50604.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50604/E-GEOD-50604.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50604/ E-GEOD-50602 Human SCC-13 Cells: Control vs. Resitant populations to photodynamic therapy (PDT) comparative genomic hybridization by array Homo sapiens 3 2013-09-06 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50602/E-GEOD-50602.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50602/ E-GEOD-48863 Gene expression changes resulting from the stable loss of BAP1 in uveal melanoma cell lines transcription profiling by array Homo sapiens 12 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48863/E-GEOD-48863.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48863/ E-GEOD-48317 Drosophila Gtsf1 is an essential component of the Piwi mediated transcriptional silencing complex ChIP-seq, RNA-seq of coding RNA, RNA-seq of non coding RNA Drosophila melanogaster 7 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48317/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48317/ E-GEOD-48053 MethlyC-Seq of ibm1-4 methylation profiling by high throughput sequencing Arabidopsis thaliana 1 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48053/E-GEOD-48053.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48053/ E-GEOD-48026 mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1 methylation profiling by high throughput sequencing, RNA-seq of coding RNA Arabidopsis thaliana 3 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48026/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48026/ E-GEOD-47957 Interferon and ribavirin treatment in a rhesus macaque model of novel Middle East respiratory syndrome coronavirus (MERS-CoV) infection (hCoV-EMC) transcription profiling by array Macaca mulatta 8 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47957/E-GEOD-47957.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47957/E-GEOD-47957.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47957/ E-GEOD-47927 Comparing gene expression in stem/progenitor cells from patients with CML in chronic, accelerated and blastic phase with normal volunteers transcription profiling by array Homo sapiens 67 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47927/E-GEOD-47927.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47927/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47927/ E-GEOD-47581 Global gene expression profiling of spontaneous mesotheliomas in F344N rats transcription profiling by array Rattus norvegicus 11 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47581/E-GEOD-47581.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47581/E-GEOD-47581.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47581/ E-GEOD-47032 Genome-wide analysis of differentially expressed genes and splicing isoforms in clear cell Renal Cell Carcinoma transcription profiling by array Homo sapiens 40 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47032/E-GEOD-47032.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47032/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47032/ E-GEOD-46850 A Common Docking (CD) Domain in Progesterone Receptor-B Links MKP3-Dependent Rapid Signaling Events to JAK/STAT Regulation of Gene Expression Required for Breast Cancer Cell Proliferation transcription profiling by array Homo sapiens 18 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46850/E-GEOD-46850.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46850/ E-GEOD-45381 Super Vs Non transcription profiling by array Bos taurus 6 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45381/E-GEOD-45381.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45381/E-GEOD-45381.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45381/ E-GEOD-44234 Pdm1/nub repression of innate immunity transcription profiling by array Drosophila melanogaster 12 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44234/E-GEOD-44234.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44234/E-GEOD-44234.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44234/ E-GEOD-43546 Involvement of microRNA-related regulatory pathways in glucose-mediated control of Arabidopsis early seedling development RNA-seq of non coding RNA Arabidopsis thaliana 3 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43546/E-GEOD-43546.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43546/ E-GEOD-42128 Clinical Utility of Circulating MicroRNA Signatures for Breast Cancer Diagnosis transcription profiling by RT-PCR, transcription profiling by array Homo sapiens 116 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42128/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42128/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42128/ E-GEOD-42072 Clinical Utility of Circulating MicroRNA Signatures for Breast Cancer Diagnosis (Gene expression) transcription profiling by array Homo sapiens 62 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42072/E-GEOD-42072.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42072/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42072/ E-GEOD-41922 Clinical Utility of Circulating MicroRNA Signatures for Breast Cancer Diagnosis (RT-PCR) transcription profiling by RT-PCR, transcription profiling by array Homo sapiens 54 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41922/E-GEOD-41922.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41922/ E-GEOD-41185 Potentiation of regulatory T cell stability and function via a neuropilin-1:semaphorin-4a axis transcription profiling by array Mus musculus 40 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41185/E-GEOD-41185.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41185/E-GEOD-41185.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41185/ E-GEOD-40682 Transcriptome profiling of breast cancer cells with Insulin like growth factor binding protein 2 (IGFBP2) knockdown transcription profiling by array Homo sapiens 4 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40682/E-GEOD-40682.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40682/E-GEOD-40682.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40682/ E-GEOD-39826 Comparative gene expression profiling of the EBV-positive NPC cell line C666.1 and normal primary tonsillar epithelial cells transcription profiling by array Homo sapiens 6 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39826/E-GEOD-39826.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39826/E-GEOD-39826.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39826/ E-GEOD-35682 Analysis of gene expression in wildtype and Notch1 mutant retinal cells by single cell profiling transcription profiling by array Mus musculus 26 2013-09-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35682/E-GEOD-35682.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35682/E-GEOD-35682.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35682/ E-MEXP-3649 Transcription profiling by array of Arabidopsis root to study gene expression in myb10/myb72 mutants under iron deficiency versus controls. transcription profiling by array Arabidopsis thaliana 4 2013-09-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3649/E-MEXP-3649.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3649/ E-GEOD-50628 Gene expression analysis in children with complex seizures by influenza A (H1N1)pdm09 or rotavirus gastroenteritis transcription profiling by array Homo sapiens 32 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50628/E-GEOD-50628.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50628/E-GEOD-50628.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50628/ E-GEOD-50621 Expression analyses of inducible c-Fos expressing kerationcytes transcription profiling by array Mus musculus 29 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50621/E-GEOD-50621.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50621/ E-GEOD-50609 Molecular basis of 9G4 B cell autoreactivity in human SLE proteomic profiling by array Homo sapiens 3 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50609/E-GEOD-50609.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50609/ E-GEOD-50603 Effect of L-Proline on mouse embryonic stem cells (ESCs) transcription profiling by array Mus musculus 12 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50603/E-GEOD-50603.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50603/E-GEOD-50603.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50603/ E-GEOD-50601 Identification of downregulated microRNA in a gastric cancer cell line co-cultured with M1- or M2-polarized macrophage transcription profiling by array Homo sapiens 3 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50601/E-GEOD-50601.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50601/E-GEOD-50601.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50601/ E-GEOD-50596 Placental ischemia induces changes in gene expression in chorionic tissue transcription profiling by array Rattus norvegicus 12 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50596/E-GEOD-50596.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50596/E-GEOD-50596.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50596/ E-GEOD-50591 Transcriptional Profiling Defines the Roles of ERK and p38 Kinases in Epidermal Keratinocytes transcription profiling by array Homo sapiens 16 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50591/E-GEOD-50591.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50591/E-GEOD-50591.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50591/ E-GEOD-50581 The Open Chromatin Landscape of Kaposi's Sarcoma-Associated Herpesvirus ChIP-seq Human herpesvirus 8 5 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50581/E-GEOD-50581.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50581/ E-GEOD-50579 Expression profiling of HCC transcription profiling by array Homo sapiens 80 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50579/E-GEOD-50579.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50579/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50579/ E-GEOD-50577 A large novel deletion downstream of PAX6 gene in a Chinese family with coloboma of iris comparative genomic hybridization by array Homo sapiens 1 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50577/E-GEOD-50577.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50577/E-GEOD-50577.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50577/ E-GEOD-50568 Expression data from N/Tert-HPV E6 cells in the presence and absence of mitomycin C treatment transcription profiling by array Homo sapiens 34 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50568/E-GEOD-50568.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50568/E-GEOD-50568.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50568/ E-GEOD-50567 BRCA1-related gene signature in breast cancer: the role of ER status and molecular type transcription profiling by array Homo sapiens 41 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50567/E-GEOD-50567.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50567/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50567/ E-GEOD-50558 Intraspecific variation of recombination rate in maize genotyping by array Zea mays 2290 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50558/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50558/ E-GEOD-49635 Analysis of the Cerebral Cortex and Hippocampus Transcriptome Reveals Unique Molecular Changes in the Ts1Cje Mouse Model of Down Syndrome transcription profiling by array Mus musculus 22 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49635/E-GEOD-49635.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49635/E-GEOD-49635.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49635/ E-GEOD-48449 Ethanol and benzyl alcohol induced H4Ac ChIP-chip in Drosophila heads ChIP-chip by tiling array Drosophila melanogaster 6 2013-09-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48449/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48449/ E-GEOD-48378 PBMCs from patients with Sjögren's syndrome and healthy controls transcription profiling by array Homo sapiens 27 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48378/E-GEOD-48378.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48378/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48378/ E-GEOD-48068 Architectural niche organization by LHX2 is linked to hair follicle stem cell function ChIP-seq Mus musculus 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48068/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48068/ E-GEOD-47674 TPL-2;ERK1/2 signaling promotes host resistance against intracellular bacterial infection by negative regulation of type I interferon production transcription profiling by array Mus musculus 158 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47674/E-GEOD-47674.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47674/ E-GEOD-47673 TPL-2;ERK1/2 signaling promotes host resistance against intracellular bacterial infection by negative regulation of type I interferon production [Set 2] transcription profiling by array Mus musculus 132 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47673/E-GEOD-47673.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47673/ E-GEOD-47672 TPL-2;ERK1/2 signaling promotes host resistance against intracellular bacterial infection by negative regulation of type I interferon production [Set 1] transcription profiling by array Mus musculus 26 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47672/E-GEOD-47672.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47672/ E-GEOD-46989 miR-146a-5p circuitry uncouples cell proliferation and migration, but not differentiation, in human mesenchymal stem cells RNA-seq of non coding RNA Homo sapiens 4 2013-09-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46989/ E-GEOD-46981 Profiling of hepatic progenitor cells isolated from Egfr fl/fl and Met fl/fl murine control livers transcription profiling by array Mus musculus 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46981/E-GEOD-46981.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46981/ E-GEOD-46816 Gene expression data from 8 pairs of CD138+/- myeloma cell lines transcription profiling by array Homo sapiens 16 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46816/E-GEOD-46816.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46816/E-GEOD-46816.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46816/ E-GEOD-45932 Rat MeDIP Array, naïve, epileptic, and adenosine treated methylation profiling by array Rattus rattus 3 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45932/E-GEOD-45932.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45932/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45932/ E-GEOD-45826 Expression data from sorted control and Pygo2-null mouse mammary stem/basal cells transcription profiling by array Mus musculus 10 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45826/E-GEOD-45826.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45826/E-GEOD-45826.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45826/ E-GEOD-45492 Nfix is a novel regulator of murine hematopoietic stem and progenitor cell survival transcription profiling by array Mus musculus 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45492/E-GEOD-45492.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45492/E-GEOD-45492.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45492/ E-GEOD-44925 HIF orchestrated metabolic shift confers protection against Acute Kidney Injury (AKI) transcription profiling by array Mus musculus 16 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44925/E-GEOD-44925.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44925/E-GEOD-44925.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44925/ E-GEOD-44456 Stress-response pathways are altered in the hippocampus of chronic alcoholics. transcription profiling by array Homo sapiens 39 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44456/E-GEOD-44456.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44456/E-GEOD-44456.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44456/ E-GEOD-44186 miR-146a-5p expression effect on human mesenchymal stem cell transcription profiling by array Homo sapiens 4 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44186/E-GEOD-44186.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44186/E-GEOD-44186.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44186/ E-GEOD-43716 Microarray to find CHOP/ATF5 dependent genes in response to proteasome inhibition transcription profiling by array Mus musculus 32 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43716/E-GEOD-43716.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43716/E-GEOD-43716.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43716/ E-GEOD-43714 Microarray to find ATF5 dependent genes in response to proteasome inhibition transcription profiling by array Mus musculus 16 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43714/E-GEOD-43714.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43714/E-GEOD-43714.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43714/ E-GEOD-43713 Microarray to find CHOP dependent genes in response to proteasome inhibition transcription profiling by array Mus musculus 16 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43713/E-GEOD-43713.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43713/E-GEOD-43713.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43713/ E-GEOD-43610 Dual Roles of the Transcription Factor Grainyhead-like 2 (GRHL2) in Breast Cancer transcription profiling by array Mus musculus 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43610/E-GEOD-43610.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43610/E-GEOD-43610.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43610/ E-GEOD-43418 RIP-Chip of endogenous Staufen and GFP-tagged Staufen from 0-3 hour Drosophila embryos transcription profiling by array Drosophila melanogaster 18 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43418/E-GEOD-43418.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43418/E-GEOD-43418.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43418/ E-GEOD-43034 Canonical Nlrp3 inflammasome activation links systemic age-related inflammation with functional decline transcription profiling by array Mus musculus 32 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43034/E-GEOD-43034.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43034/ E-GEOD-42741 Chromatin Immunoprecipitation of Nuclear Pore Proteins in C. elegans ChIP-seq, ChIP-chip by tiling array, RNA-seq of coding RNA Caenorhabditis elegans 23 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42741/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42741/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42741/ E-GEOD-42714 Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq] ChIP-seq, RNA-seq of coding RNA Caenorhabditis elegans 21 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42714/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42714/ E-GEOD-42651 Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [array] ChIP-chip by tiling array Caenorhabditis elegans 2 2013-09-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42651/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42651/ E-GEOD-42029 Silencing of OsMADS29 in Oryza sativa var. PB1 transcription profiling by array Oryza sativa 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42029/E-GEOD-42029.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42029/E-GEOD-42029.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42029/ E-GEOD-42028 Overexpression of OsMADS29 in Oryza sativa var. PB1 transcription profiling by array Oryza sativa 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42028/E-GEOD-42028.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42028/E-GEOD-42028.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42028/ E-GEOD-42026 Transcriptomic profiling in childhood H1N1/09 influenza reveals reduced expression of protein synthesis genes transcription profiling by array Homo sapiens 92 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42026/E-GEOD-42026.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42026/ E-GEOD-41519 Gene content or gene expression, which determines the difference in host specificity and virulence of strains of Xanthomonas citri subsp. citri? RNA-seq of coding RNA Xanthomonas citri subsp. citri 12 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41519/E-GEOD-41519.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41519/ E-GEOD-40614 Id1 knockdown in primary human glioma stem cells transcription profiling by array Homo sapiens 12 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40614/E-GEOD-40614.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40614/ E-GEOD-40587 miRNA expression in Blimp-1-deficient dendritic cells transcription profiling by array Mus musculus 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40587/E-GEOD-40587.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40587/E-GEOD-40587.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40587/ E-GEOD-39079 Foam cell specific LXR? ligand transcription profiling by array Homo sapiens 29 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39079/E-GEOD-39079.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39079/ E-GEOD-38856 Protein sets define disease states and predict in vivo effects of drug treatment transcription profiling by array Mus musculus 46 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38856/E-GEOD-38856.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38856/ E-GEOD-38855 Protein sets define disease states and predict in vivo effects of drug treatment [WAT] transcription profiling by array Mus musculus 15 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38855/E-GEOD-38855.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38855/ E-GEOD-38854 Protein sets define disease states and predict in vivo effects of drug treatment [Liver B] transcription profiling by array Mus musculus 11 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38854/E-GEOD-38854.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38854/ E-GEOD-38853 Protein sets define disease states and predict in vivo effects of drug treatment [Liver A] transcription profiling by array Mus musculus 10 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38853/E-GEOD-38853.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38853/ E-GEOD-38852 Protein sets define disease states and predict in vivo effects of drug treatment [heart] transcription profiling by array Mus musculus 10 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38852/E-GEOD-38852.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38852/ E-GEOD-30342 AI-2 quorum sensing in *Yersinia pestis* transcription profiling by array Yersinia pestis 24 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30342/E-GEOD-30342.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30342/E-GEOD-30342.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30342/ E-GEOD-22850 Outlier detection of biologically significant genes from combinatorial microarray data transcription profiling by array Yersinia pestis 24 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22850/E-GEOD-22850.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22850/E-GEOD-22850.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22850/ E-GEOD-22849 Transcriptional analysis of luxS-null strain in Yersinia pestis CO92 at 37°C transcription profiling by array Yersinia pestis 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22849/E-GEOD-22849.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22849/E-GEOD-22849.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22849/ E-GEOD-22848 Transcription analysis of AI-2 signal add in experiment in Yersinia pestis CO92 at 37°C transcription profiling by array Yersinia pestis 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22848/E-GEOD-22848.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22848/E-GEOD-22848.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22848/ E-GEOD-22846 Transcriptional analysis of three quorum sensing signals add in experiment inYersinia pestis CO92 at 37°C transcription profiling by array Yersinia pestis 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22846/E-GEOD-22846.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22846/E-GEOD-22846.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22846/ E-GEOD-21911 Transcriptional analysis of quorum sensing deficient in Yersinia pestis CO92 at 37°C transcription profiling by array Yersinia pestis 6 2013-09-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-21911/E-GEOD-21911.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-21911/E-GEOD-21911.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-21911/ E-MTAB-1292 Transcription profiling by high throughput sequencing of Astatoreochromis alluaudi fed a mechanically stimulating diets to determine the molecular basis of pharyngeal jaw plasticity. RNA-seq of coding RNA Astatoreochromis alluaudi 36 2013-09-04 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1292/ E-MTAB-1264 Transcription profiling by array of Arabidopsis whole plants and discrete root, hypocotyl and shoot responses to the orbital environment transcription profiling by array Arabidopsis thaliana 36 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1264/E-MTAB-1264.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1264/E-MTAB-1264.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1264/ E-MTAB-979 Transcription profiling by array of human monocyte-derived cells treated with Denileukin diftitox (ONTAK) transcription profiling by array Homo sapiens 2 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-979/E-MTAB-979.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-979/E-MTAB-979.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-979/ E-MTAB-977 Treatment of dendritic cells and monocytes from immunotherapy treated patients with ONTAK transcription profiling by array Homo sapiens 12 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-977/E-MTAB-977.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-977/E-MTAB-977.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-977/ E-GEOD-50552 Histone Deacetylase Inhibition Promotes Osteoblast Maturation by Altering the Histone 4 (H4) Epigenome ChIP-seq, transcription profiling by array Mus musculus 14 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50552/E-GEOD-50552.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50552/ E-GEOD-50551 Histone Deacetylase Inhibition Promotes Osteoblast Maturation by Altering the Histone 4 (H4) Epigenome (ChIP-Seq) ChIP-seq Mus musculus 2 2013-09-04 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50551/ E-GEOD-50549 Histone Deacetylase Inhibition Promotes Osteoblast Maturation by Altering the Histone 4 (H4) Epigenome (BeadChip) transcription profiling by array Mus musculus 12 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50549/E-GEOD-50549.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50549/ E-GEOD-50538 B. subtilis response to rotten meat volatiles. transcription profiling by array Bacillus subtilis subsp. subtilis str. 168 4 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50538/E-GEOD-50538.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50538/E-GEOD-50538.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50538/ E-GEOD-50537 Expression data from RUNX1S291fs-mutant and/or Ezh2 conditional knockout Lineage-c-Kit+Sca-1+ (LSK) cells transcription profiling by array Mus musculus 8 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50537/E-GEOD-50537.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50537/E-GEOD-50537.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50537/ E-GEOD-50514 Non-IG Aberrations of FOXP1 in B-Cell Malignancies Lead to an Aberrant Expression of N-Truncated Isoforms of FOXP1 RNA-seq of coding RNA Homo sapiens 8 2013-09-04 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50514/ E-GEOD-48939 Analysis of gene expression changes induced in wild-type or Atf6a-/- mice by treatment with tunicamycin transcription profiling by array Mus musculus 24 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48939/E-GEOD-48939.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48939/E-GEOD-48939.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48939/ E-GEOD-48935 Analysis of gene expression changes induced in wild-type or Atf6a-/- mice by treatment with tunicamycin for 34h transcription profiling by array Mus musculus 12 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48935/E-GEOD-48935.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48935/E-GEOD-48935.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48935/ E-GEOD-48932 Analysis of gene expression changes induced in wild-type or Atf6a-/- mice by treatment with tunicamycin for 8h transcription profiling by array Mus musculus 12 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48932/E-GEOD-48932.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48932/E-GEOD-48932.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48932/ E-GEOD-48427 Transcriptomic analyses of arsenic-treated zebrafish liver RNA-seq of coding RNA Danio rerio 2 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48427/E-GEOD-48427.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48427/ E-GEOD-48127 AtHB17 Regulates Photosynthetic Capacity transcription profiling by array Arabidopsis thaliana 6 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48127/E-GEOD-48127.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48127/E-GEOD-48127.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48127/ E-GEOD-46225 De Novo Transcriptomic Analysis of Hydrogen Production in the Green Alga Chlamydomonas moewusii through RNA-Seq RNA-seq of coding RNA Chlamydomonas moewusii 7 2013-09-04 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46225/ E-GEOD-44990 Expression changes in Tetrahymena thermophila TRX1 and EZL2 gene knockouts and after hydroxyurea (HU) treatment transcription profiling by array Tetrahymena thermophila 12 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44990/E-GEOD-44990.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44990/E-GEOD-44990.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44990/ E-GEOD-41790 Expression profiling of human foreskin fibroblasts cultured in media supplemented with human sera transcription profiling by array Homo sapiens 25 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41790/E-GEOD-41790.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41790/ E-GEOD-40636 PGN induced transcriptional changes in human neonatal neutrophils transcription profiling by array Homo sapiens 6 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40636/E-GEOD-40636.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40636/E-GEOD-40636.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40636/ E-GEOD-31909 Whole-genome gene expression profiling of normal melanocytes and melanoma cell lines transcription profiling by array Homo sapiens 12 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31909/E-GEOD-31909.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31909/ E-GEOD-28575 Expression profiling of FRG1 transgenic mice. transcription profiling by array Mus musculus 6 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28575/E-GEOD-28575.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28575/ E-GEOD-21165 Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses transcription profiling by array Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 16 2013-09-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-21165/E-GEOD-21165.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-21165/E-GEOD-21165.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-21165/ E-ERAD-128 RNA-Seq of human samples within Chordoma Sequencing Project. EGA study. RNA-seq of coding RNA Homo sapiens 8 2013-09-04 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-128/ E-MTAB-1849 ChIP-chip by array of E. coli Sigma 32 binding sites following heat shock treatment ChIP-chip by array Escherichia coli K-12 2 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1849/E-MTAB-1849.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1849/ E-MTAB-1269 Transcription profiling by array of human male kidney renal cell adenocarcinoma to investigate the hypoxia responsive pathway transcription profiling by array Homo sapiens 16 2013-09-03 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1269/E-MTAB-1269.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1269/ E-GEOD-50526 Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection transcription profiling by array Arabidopsis thaliana 29 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50526/E-GEOD-50526.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50526/E-GEOD-50526.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50526/ E-GEOD-50525 Expression data from control siRNA and ?-catenin siRNA transfected cultured mouse dermal cells transcription profiling by array Mus musculus 2 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50525/E-GEOD-50525.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50525/E-GEOD-50525.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50525/ E-GEOD-50522 Transcriptome analysis of rice pathogen Acidovorax avenae subsp. avenae cultivated in vitro, in vivo and in co-culture with the rice rhizobacterium Burkholderia seminalis RNA-seq of coding RNA Acidovorax avenae subsp. avenae RS-1 6 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50522/E-GEOD-50522.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50522/ E-GEOD-50481 Specifically-expressed genes of Bursaphelenchus xylophilus involved in the nematode?s early interaction with pine trees transcription profiling by array Bursaphelenchus xylophilus 6 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50481/E-GEOD-50481.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50481/E-GEOD-50481.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50481/ E-GEOD-48598 Gene expression profile in the liver of insulin-deficient mice with icv leptin administration transcription profiling by array Mus musculus 12 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48598/E-GEOD-48598.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48598/ E-GEOD-45872 Hypoxia-enhanced Derivation of iPSCs from Human Dental Pulp Cells transcription profiling by array Homo sapiens 12 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45872/E-GEOD-45872.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45872/E-GEOD-45872.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45872/ E-GEOD-45804 Gene expression data from MCF-7 cells treated with Lacciac Acid A transcription profiling by array Homo sapiens 6 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45804/E-GEOD-45804.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45804/E-GEOD-45804.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45804/ E-GEOD-45144 Genome-wide Analysis of Transcriptional Regulators in Human Blood Stem/Progenitor Cells reveals a densely interconnected network of coding and non-coding genes. ChIP-seq, RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 10 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45144/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45144/ E-GEOD-44976 Global analysis of alternative splicing regulated by RBM10 other, RNA-seq of coding RNA Homo sapiens 17 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44976/E-GEOD-44976.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44976/ E-GEOD-43617 Gene body 5-hydroxymethylcytosine facilitates transcription in olfactory neurons methylation profiling by high throughput sequencing, RNA-seq of coding RNA Mus musculus 3 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43617/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43617/ E-GEOD-43185 Analysis of transcripts in PNA-A(15) oligo treated human HEK-293 cells transcription profiling by array Homo sapiens 4 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43185/E-GEOD-43185.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43185/E-GEOD-43185.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43185/ E-GEOD-43125 Inducible knockdown of Plasmodium gene expression using the glmS ribozyme RNA-seq of coding RNA Plasmodium falciparum 8 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43125/E-GEOD-43125.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43125/ E-GEOD-42793 Intracranial self-stimulation regulates gene expression in rat hippocampus transcription profiling by array Rattus norvegicus 8 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42793/E-GEOD-42793.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42793/E-GEOD-42793.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42793/ E-GEOD-42768 Colonic gene expression data of acute and chronic dextran sodium sulphate (DSS) colitis mice transcription profiling by array Mus musculus 30 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42768/E-GEOD-42768.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42768/E-GEOD-42768.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42768/ E-GEOD-42330 Gene expression analysis of cultured adipocytes treated with different types of asbestos fibers transcription profiling by array Mus musculus 8 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42330/E-GEOD-42330.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42330/E-GEOD-42330.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42330/ E-GEOD-41816 Gene expression profiling of MDA231, BT549, and SUM159PT cells after selumetinib treatment or DUSP4 siRNA knockdown transcription profiling by array Homo sapiens 36 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41816/E-GEOD-41816.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41816/E-GEOD-41816.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41816/ E-GEOD-41412 Gene expression data in mouse fetal lungs transcription profiling by array Mus musculus 24 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41412/E-GEOD-41412.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41412/E-GEOD-41412.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41412/ E-GEOD-41118 Mutant PI3K cooperates with HER2 to promote mammary tumor formation and induces trastuzumab resistance in vivo transcription profiling by array Mus musculus 19 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41118/E-GEOD-41118.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41118/ E-GEOD-38604 The developmental patterning of 5-hydroxymethylcytosine during neuronal differentiation methylation profiling by high throughput sequencing, RNA-seq of coding RNA Mus musculus 9 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38604/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38604/ E-GEOD-30432 Gene expression profiling of ElonginA knocked-down Hela cells in the presence of Doxorubicin transcription profiling by array Homo sapiens 2 2013-09-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30432/E-GEOD-30432.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30432/E-GEOD-30432.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30432/ E-MEXP-3927 Transcription profiling by array of yeast with homozygous CCC2 deletion grown with different concentrations of copper. transcription profiling by array Saccharomyces cerevisiae 12 2013-09-02 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3927/E-MEXP-3927.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3927/E-MEXP-3927.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3927/ E-GEOD-50458 CSE-induced hydorogen sulfide improves glucose homeostasis and inhibits beta-cell failure in high-fat diet mice transcription profiling by array Mus musculus 2 2013-09-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50458/E-GEOD-50458.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50458/E-GEOD-50458.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50458/ E-GEOD-48839 Genome-wide transcript profiling for native porcine valvular interstitial cells and those cultured on TCPS and treated with TGF-?1 transcription profiling by array Sus scrofa 12 2013-09-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48839/E-GEOD-48839.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48839/E-GEOD-48839.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48839/ E-GEOD-39324 Gene expression profiling of the effects of Cyclophosphamide on peripheral blood mononuclear cells transcription profiling by array Homo sapiens 33 2013-09-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39324/E-GEOD-39324.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39324/E-GEOD-39324.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39324/ E-GEOD-30139 Role of Per2 in the control of liver glycogen metabolism transcription profiling by array Mus musculus 8 2013-09-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30139/E-GEOD-30139.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30139/ E-GEOD-27047 miRNA profiling of gastric epithelium from Pten mutant mouse transcription profiling by array Mus musculus 4 2013-09-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27047/E-GEOD-27047.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27047/E-GEOD-27047.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27047/ E-MTAB-1829 RNA-seq of human differentiated and undifferentiated mesenchymal stem cells to study the regulatory landsacpe of osteogenic differentiation RNA-seq of coding RNA Homo sapiens 4 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1829/ E-MTAB-1828 ChIP-seq of human (un)differentiated mesenchymal stem cells and normal osteoblasts with antibodies against various histone H3 modifications and RUNX2 to study the regulatory landscape of osteogenic differentiation ChIP-seq Homo sapiens 16 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1828/ E-MTAB-1824 RNA-seq of coding RNA from fission yeast (pat1-114 strain) grown at different temperatures over an eight-hour time-course and against JB22 strain to analyse genome-wide poly(A) site selection RNA-seq of coding RNA Schizosaccharomyces pombe 2 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1824/ E-MTAB-1815 RNA-seq of non coding RNA from 20 standardized positive and negative control samples, including human universal reference RNA, human brain RNA and titrations thereof, human serum samples, and synthetic spikes from homologous microRNA family members RNA-seq of non coding RNA Homo sapiens 20 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1815/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1815/ E-MTAB-1675 RNA-seq of Deformed wing virus (DWV) cDNA fragments covering complete DWV genomic RNA sequences extracted from virus preparations and the injected honeybee (Apis mellifera) pupae RNA-seq of coding RNA, RNA-seq of non coding RNA Deformed wing virus 6 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1675/ E-MTAB-1671 RNA-seq of non coding RNA to investigate effects of Deformed wing virus (DWV) infection and the mite Varroa destructor on siRNA and miRNA composition in the honeybee Apis mellifera RNA-seq of non coding RNA Apis mellifera 7 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1671/ E-MTAB-1635 RNA-seq of coding RNA of different Aedes aegypti strains obtained by selection with various insecticides RNA-seq of coding RNA Aedes aegypti 12 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1635/ E-MTAB-1460 ChIP-chip by tiling array of Ezh2 in embryonic stem cells to investigate PcG-protein occupancy in the Neurog3 locus ChIP-chip by tiling array Mus musculus 4 2013-09-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1460/E-MTAB-1460.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1460/ E-MTAB-887 Transcription profiling by array of ER-positive breast cancer biopsies taken before and after 4 weeks of fulvestrant treatment transcription profiling by array Homo sapiens 76 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-887/E-MTAB-887.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-887/E-MTAB-887.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-887/ E-MEXP-3957 Transcription profiling by array of rat tibialis anterior muscle after massage. transcription profiling by array Rattus norvegicus 9 2013-09-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3957/E-MEXP-3957.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3957/ E-MEXP-3941 Transcription profiling by array of Enterococcus faecium E112 grown at 25 degrees C and 37 degrees C. transcription profiling by array Enterococcus faecium 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3941/E-MEXP-3941.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3941/E-MEXP-3941.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3941/ E-MEXP-3758 Transcription profiling by array of human retinal punches from posterior poles to investigate gene expression in eyes of HIV positive and negative patients transcription profiling by array Homo sapiens 11 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3758/E-MEXP-3758.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3758/E-MEXP-3758.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3758/ E-MEXP-2424 Transcription profiling of E. coli throughout the glucose to acetate transition transcription profiling by array Escherichia coli 1 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2424/ E-GEOD-50519 Expression profiling of mouse liver after treatment with Vascular Endothelial Growth Factor (VEGF) inhibitor aflibercept transcription profiling by array Mus musculus 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50519/E-GEOD-50519.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50519/E-GEOD-50519.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50519/ E-GEOD-50429 Deep sequencing of exosomal and cellular miRNAs in MDA-MB-231 and MCF-10A cells RNA-seq of non coding RNA Homo sapiens 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50429/E-GEOD-50429.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50429/ E-GEOD-49937 Expression data from the hearts of a mouse model of spontaneous myocardial infarction transcription profiling by array Mus musculus 88 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49937/E-GEOD-49937.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49937/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49937/ E-GEOD-49815 Mutational Variation in Gene Expression transcription profiling by array Drosophila serrata 82 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49815/E-GEOD-49815.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49815/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49815/ E-GEOD-49811 Expression profiles of colorectal cancer cell lines transcription profiling by array Homo sapiens 32 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49811/E-GEOD-49811.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49811/E-GEOD-49811.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49811/ E-GEOD-49786 Pdx-1 activates islet ?- and ?-cell proliferation via a TRPC3/6- and ERK 1/2-regulated mechanism transcription profiling by array Rattus norvegicus 15 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49786/E-GEOD-49786.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49786/E-GEOD-49786.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49786/ E-GEOD-49450 Murine lung exposed to cigarette smoke and poly(I:C): Thioredoxin-1 vs. Saline Treated transcription profiling by array Mus musculus 1 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49450/E-GEOD-49450.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49450/E-GEOD-49450.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49450/ E-GEOD-49429 Genome-wide approaches reveal functional VEGF-inducible NFATc1 binding to the angiogenesis-related genes in endothelium ChIP-seq, transcription profiling by array Homo sapiens 11 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49429/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49429/E-GEOD-49429.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49429/ E-GEOD-49428 Global analysis of NFATc1 binding and histone marks in VEGF-activated endothelial cells ChIP-seq Homo sapiens 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49428/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49428/ E-GEOD-49426 Global analysis of NFATc1 targets in human vascular endothelial cells transcription profiling by array Homo sapiens 5 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49426/E-GEOD-49426.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49426/E-GEOD-49426.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49426/ E-GEOD-49416 GBM response to Smo and PI3K inhibitors transcription profiling by array Homo sapiens 16 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49416/E-GEOD-49416.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49416/E-GEOD-49416.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49416/ E-GEOD-49355 Specific extracellular matrix remodeling signature of colon hepatic metastases transcription profiling by array Homo sapiens 57 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49355/E-GEOD-49355.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49355/E-GEOD-49355.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49355/ E-GEOD-49321 Improved Smart-Seq for sensitive full-length transcriptome profiling in single cells RNA-seq of coding RNA Homo sapiens, Mus musculus 76 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49321/E-GEOD-49321.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49321/ E-GEOD-49230 Gene regulation by Pax6 in the lens placode - E9.5 transcription profiling by array Mus musculus 18 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49230/E-GEOD-49230.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49230/ E-GEOD-49229 Gene regulation by Pax6 in the lens placode - E9.5 (3) transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49229/E-GEOD-49229.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49229/ E-GEOD-49228 Gene regulation by Pax6 in the lens placode - E9.5 (2) transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49228/E-GEOD-49228.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49228/ E-GEOD-49227 Gene regulation by Pax6 in the lens placode - E9.5 (1) transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49227/E-GEOD-49227.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49227/ E-GEOD-49196 TALEN-Engineered AR Gene Rearrangements Reveal Endocrine Uncoupling of Androgen Receptor in Prostate Cancer transcription profiling by array Homo sapiens 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49196/E-GEOD-49196.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49196/ E-GEOD-49173 Donor cell type-specific gene expression in embryonic but not extraembryonic tissues of postimplantation embryos cloned from somatic cells transcription profiling by array Mus musculus 44 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49173/E-GEOD-49173.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49173/E-GEOD-49173.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49173/ E-GEOD-49172 Comparative gene expression analyses using E4.0 cloned blastocysts transcription profiling by array Mus musculus 14 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49172/E-GEOD-49172.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49172/E-GEOD-49172.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49172/ E-GEOD-49171 Comparative gene expression analyses using post-implanted E6.5 cloned embryos transcription profiling by array Mus musculus 30 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49171/E-GEOD-49171.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49171/E-GEOD-49171.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49171/ E-GEOD-48921 Gene expression and copy number analysis of OVCAR-3 and CDK2 resistant sublines transcription profiling by array, comparative genomic hybridization by array Homo sapiens 20 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48921/E-GEOD-48921.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48921/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48921/ E-GEOD-48920 Copy number analysis of OVCAR-3 and CDK2 resistant sublines comparative genomic hybridization by array Homo sapiens 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48920/E-GEOD-48920.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48920/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48920/ E-GEOD-48919 Gene expression analysis of OVCAR-3 and CDK2 resistant sublines transcription profiling by array Homo sapiens 14 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48919/E-GEOD-48919.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48919/E-GEOD-48919.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48919/ E-GEOD-48860 Saccharomyces cerevisiae promoter library other Saccharomyces cerevisiae 1 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48860/E-GEOD-48860.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48860/ E-GEOD-48857 Arabidopsis Polycomb Repressive Complex 2 binding sites contain putative GAGA factor binding motifs within coding regions of genes transcription profiling by array Arabidopsis thaliana 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48857/E-GEOD-48857.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48857/E-GEOD-48857.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48857/ E-GEOD-48849 Expression data from INTS8 human mutants and controls transcription profiling by array Homo sapiens 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48849/E-GEOD-48849.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48849/E-GEOD-48849.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48849/ E-GEOD-48801 Genetic mapping with multiple levels of phenotypic information reveals new determinants of lymphocyte glucocorticoid sensitivity transcription profiling by array Homo sapiens 179 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48801/E-GEOD-48801.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48801/ E-GEOD-48789 Gene expression profile of Tet1 knockout cortex and hippocampus transcription profiling by array Mus musculus 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48789/E-GEOD-48789.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48789/E-GEOD-48789.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48789/ E-GEOD-48775 Microarray analysis of genes involved in Streptolysin S immunity transcription profiling by array Streptococcus pyogenes 27 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48775/E-GEOD-48775.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48775/E-GEOD-48775.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48775/ E-GEOD-48673 Expression analysis of human CRABP1 gene and R131A CRABP1 mutant in HT1080 cells transcription profiling by array Homo sapiens 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48673/E-GEOD-48673.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48673/E-GEOD-48673.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48673/ E-GEOD-48668 Expression data from HeLa cells treated with tocotrienols transcription profiling by array Homo sapiens 11 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48668/E-GEOD-48668.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48668/E-GEOD-48668.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48668/ E-GEOD-48653 Mbd2 promotes Foxp3 demethylation and T-regulatory cell function transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48653/E-GEOD-48653.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48653/E-GEOD-48653.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48653/ E-GEOD-48563 Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by Race 1 and Race 4 of Fusarium oxysporum f. sp. Cubense RNA-seq of coding RNA Musa acuminata 9 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48563/ E-GEOD-48465 cdt1_bis; Transcriptome comparison of the crl mutant and CDT1-RNAi line transcription profiling by array Arabidopsis thaliana 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48465/E-GEOD-48465.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48465/E-GEOD-48465.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48465/ E-GEOD-48402 Transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines; Quorum-sensing in Agrobacterium-induced tumors transcription profiling by array Arabidopsis thaliana 42 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48402/E-GEOD-48402.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48402/E-GEOD-48402.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48402/ E-GEOD-48271 Molecular Characterization of Heat Intolerance in Mice: microRNA (Affymetrix) and mRNA (Illumina) platforms transcription profiling by array Mus musculus 24 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48271/E-GEOD-48271.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48271/E-GEOD-48271.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48271/ E-GEOD-48270 Molecular Characterization of Heat Intolerance in Mice (microRNA data) transcription profiling by array Mus musculus 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48270/E-GEOD-48270.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48270/E-GEOD-48270.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48270/ E-GEOD-48269 Molecular Characterization of Heat Intolerance in Mice (mRNA data) transcription profiling by array Mus musculus 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48269/E-GEOD-48269.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48269/ E-GEOD-48249 Genome-wide analysis of miRNA-mRNA interactions in the marrow microenvironment other, transcription profiling by array Homo sapiens 22 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48249/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48249/E-GEOD-48249.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48249/ E-GEOD-48063 Potential Roles of miR-29a in the Molecular Pathophysiology of T-Cell Acute Lymphoblastic Leukemia transcription profiling by array Homo sapiens 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48063/E-GEOD-48063.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48063/E-GEOD-48063.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48063/ E-GEOD-47840 The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus transcription profiling by array Paxillus involutus 21 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47840/E-GEOD-47840.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47840/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47840/ E-GEOD-47839 Expression analysis from glass-bead cultures of Paxillus involutus (ATCC200175) after amendments of nitrogen (+/-NH4) to substrate followed by incubation for different periods of time transcription profiling by array Paxillus involutus 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47839/E-GEOD-47839.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47839/E-GEOD-47839.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47839/ E-GEOD-47838 Expression analysis from glass-bead cultures of Paxillus involutus (ATCC200175) after amendments of 3 different substrates transcription profiling by array Paxillus involutus 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47838/E-GEOD-47838.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47838/E-GEOD-47838.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47838/ E-GEOD-47803 Co-regulated gene expression by estrogen receptor-? and liver receptor homolog-1 is a feature of the estrogen response in breast cancer cells transcription profiling by array Homo sapiens 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47803/E-GEOD-47803.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47803/ E-GEOD-47713 Expression data from polysomal, nonpolysomal, and total RNAs in the S. cerevisiae tRNA trafficking mutants, msn5 and mtr10 transcription profiling by array Saccharomyces cerevisiae 36 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47713/E-GEOD-47713.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47713/E-GEOD-47713.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47713/ E-GEOD-47707 The tetraspanin CD9 affords high purity capture of all murine hematopoietic stem cells. RNA-seq of coding RNA Mus musculus 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47707/E-GEOD-47707.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47707/ E-GEOD-47630 Agilent 244K CGH data for esophageal squamous cell carcinoma (ESCC) comparative genomic hybridization by array Homo sapiens 40 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47630/E-GEOD-47630.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47630/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47630/ E-GEOD-47584 Gene expression profiling in whole blood in patients for Klinefelter?s Syndrome transcription profiling by array Homo sapiens 10 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47584/E-GEOD-47584.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47584/E-GEOD-47584.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47584/ E-GEOD-47545 Gene expression analysis of wild type Pectobacteriumwasabie SCC3193 wildtype compared to a SCC3193 inactivation mutant of RsmA, inactivation mutant of ExpA and an ExpA RsmA double inactivation mutant. transcription profiling by array Pectobacterium wasabiae 36 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47545/ E-GEOD-47455 Analysis of change in circulating microRNAs in mice during breast tumor development transcription profiling by array Mus musculus 10 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47455/E-GEOD-47455.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47455/ E-GEOD-47404 mRNA expression profiles of 71 esophageal squamous cell carcinoma cases transcription profiling by array Homo sapiens 71 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47404/E-GEOD-47404.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47404/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47404/ E-GEOD-47204 CytoScanHD array Data for Colerectal Tumor and Normal Samples comparative genomic hybridization by array Homo sapiens 30 2013-09-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47204/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47204/ E-GEOD-47169 Differential roles of nuclear and cytosolic GI in regulating plant circadian system transcription profiling by array Arabidopsis thaliana 30 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47169/E-GEOD-47169.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47169/E-GEOD-47169.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47169/ E-GEOD-47151 Tdrkh Interacts with Miwi and Miwi2 in the primary piRNA biogenesis pathway. RNA-seq of non coding RNA Mus musculus 2 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47151/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47151/ E-GEOD-47104 P38 signaling underlies a cell-autonomous loss of stem cell self-renewal in aged muscle transcription profiling by array Mus musculus 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47104/E-GEOD-47104.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47104/E-GEOD-47104.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47104/ E-GEOD-47004 Measuring expression from randomly-designed DNA in S. cerevisiae transcription profiling by tiling array Saccharomyces cerevisiae 8 2013-09-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47004/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47004/ E-GEOD-46941 Inhibition of the PI-PLC by U73122 transcription profiling by array Arabidopsis thaliana 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46941/E-GEOD-46941.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46941/E-GEOD-46941.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46941/ E-GEOD-46906 Transcriptome based identification of mouse cumulus cell markers that predict the developmental competence of their enclosed antral oocytes transcription profiling by array Mus musculus 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46906/E-GEOD-46906.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46906/ E-GEOD-46743 Investigating the first genomic response to stress ? insights into the etiology and pathophysiology of major depression transcription profiling by array Homo sapiens 320 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46743/E-GEOD-46743.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46743/ E-GEOD-46695 Inhibition of astroglial NF-kB regulates oligogenesis following spinal cord injury. transcription profiling by array Mus musculus 22 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46695/E-GEOD-46695.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46695/E-GEOD-46695.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46695/ E-GEOD-46652 Expression data from Saccharomyces cerevisiae with Rnase H overexpression transcription profiling by array Saccharomyces cerevisiae 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46652/E-GEOD-46652.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46652/E-GEOD-46652.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46652/ E-GEOD-46371 Expression data from zebrafish (Danio rerio) embryos exposed to methyl tert-butyl ether transcription profiling by array Danio rerio 36 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46371/E-GEOD-46371.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46371/E-GEOD-46371.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46371/ E-GEOD-46342 ivt-Transcriptomic study of rice seed ageing transcription profiling by array Oryza sativa 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46342/E-GEOD-46342.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46342/E-GEOD-46342.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46342/ E-GEOD-46334 ovation-Transcriptomic study of rice seed ageing transcription profiling by array Oryza sativa 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46334/E-GEOD-46334.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46334/E-GEOD-46334.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46334/ E-GEOD-46244 Expression data from wound skin taken at three time points post wounding transcription profiling by array Mus musculus 3 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46244/E-GEOD-46244.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46244/E-GEOD-46244.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46244/ E-GEOD-46208 A spatiotemporal understanding of growth regulation during the salt-stress response (Agilent) transcription profiling by array Arabidopsis thaliana 24 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46208/E-GEOD-46208.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46208/E-GEOD-46208.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46208/ E-GEOD-46205 A spatiotemporal understanding of growth regulation during the salt-stress response (Affymetrix) transcription profiling by array Arabidopsis thaliana 96 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46205/E-GEOD-46205.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46205/E-GEOD-46205.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46205/ E-GEOD-45998 Effects of hexachlorocyclopentadiene (HCCPD) transcription profiling by array Daphnia magna 16 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45998/E-GEOD-45998.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45998/E-GEOD-45998.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45998/ E-GEOD-45994 Cell transcriptional state alters genomic patterns of DNA double-strand break repair in human astrocytes transcription profiling by array Homo sapiens 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45994/E-GEOD-45994.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45994/E-GEOD-45994.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45994/ E-GEOD-45838 Knock-down of BCL6 expression in human Diffuse Large B-Cell Lymphoma cell lines transcription profiling by array Homo sapiens 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45838/E-GEOD-45838.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45838/E-GEOD-45838.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45838/ E-GEOD-45789 MicroRNA profiling of bleomycin-induced pulmonary fibrosis in mice transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45789/E-GEOD-45789.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45789/E-GEOD-45789.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45789/ E-GEOD-45586 affy_sunflower_2011_02-Effect of frost on sunflower transcription profiling by array Helianthus annuus 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45586/E-GEOD-45586.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45586/E-GEOD-45586.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45586/ E-GEOD-45576 Nitric oxide-fixation in plants: A new pathway enabling the use of nitric oxide as nitrogen source transcription profiling by array Arabidopsis thaliana 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45576/E-GEOD-45576.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45576/E-GEOD-45576.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45576/ E-GEOD-45344 The Drosophila surface glia transcriptome: insights into conserved blood-brain barrier physiologies transcription profiling by array Drosophila melanogaster 20 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45344/E-GEOD-45344.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45344/E-GEOD-45344.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45344/ E-GEOD-45326 Identification of expressed and conserved human non-coding RNAs RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45326/E-GEOD-45326.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45326/ E-GEOD-45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma transcription profiling by array, methylation profiling by array Homo sapiens 18 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45189/E-GEOD-45189.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45189/E-GEOD-45189.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45189/ E-GEOD-45188 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Expression data] transcription profiling by array Homo sapiens 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45188/E-GEOD-45188.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45188/E-GEOD-45188.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45188/ E-GEOD-45187 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Methylation data] methylation profiling by array Homo sapiens 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45187/E-GEOD-45187.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45187/ E-GEOD-44816 DOCK8 is critical for the survival and function of NKT cells transcription profiling by array Mus musculus 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44816/E-GEOD-44816.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44816/ E-GEOD-44815 DOCK8 is critical for the survival and function of NKT cells [NKT_CD103+] transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44815/E-GEOD-44815.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44815/ E-GEOD-44814 DOCK8 is critical for the survival and function of NKT cells [DOCK8_CPM_NKT] transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44814/E-GEOD-44814.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44814/ E-GEOD-44738 Methylated DNA immunoprecipitation coupled with NimbleGen's array to identify methylated genes in pancreatic ductal adenocarcinoma methylation profiling by array Homo sapiens 2 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44738/E-GEOD-44738.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44738/E-GEOD-44738.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44738/ E-GEOD-44570 miRNA expression changes in murine liver tumorigenesis transcription profiling by array Mus musculus 16 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44570/E-GEOD-44570.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44570/E-GEOD-44570.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44570/ E-GEOD-44100 Inducer Free Cellulase Secretion in Neurospora Crassa and comparitive analysis of cellulase induction in Aspergillus nidulans RNA-seq of coding RNA Aspergillus nidulans FGSC A4, Neurospora crassa OR74A 22 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44100/E-GEOD-44100.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44100/ E-GEOD-43883 affy_ath_2012_05-Arabidopsis Ubiquitin-Like Proteases characterization transcription profiling by array Arabidopsis thaliana 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43883/E-GEOD-43883.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43883/E-GEOD-43883.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43883/ E-GEOD-43385 Grape berry: control vs late harvest techniques (late harvest, DMR-A, DMR-B) transcription profiling by array Vitis vinifera 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43385/E-GEOD-43385.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43385/E-GEOD-43385.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43385/ E-GEOD-42836 Tissue-specific methylomes reveal epigenetic memory in adult mouse tissue methylation profiling by high throughput sequencing Mus musculus 17 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42836/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42836/ E-GEOD-42699 MicroRNA expression in prostate cancer cells stimulated with cancer associated fibroblasts transcription profiling by array Homo sapiens 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42699/E-GEOD-42699.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42699/ E-GEOD-42193 IL-21 controls gene expression in B-chronic lymphocytic leukemia (CLL) cells through micro-RNA regulation transcription profiling by array Homo sapiens 44 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42193/E-GEOD-42193.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42193/ E-GEOD-42160 IL-21 regulates miRNA expression in B-chronic lymphocytic leukemia transcription profiling by array Homo sapiens 18 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42160/E-GEOD-42160.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42160/ E-GEOD-42158 IL-21 regulates the expression of chemokine genes in B-chronic lymphocytic leukemia transcription profiling by array Homo sapiens 26 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42158/E-GEOD-42158.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42158/ E-GEOD-42098 Integration of epigenetic and transcriptional mechanisms governs functional commitment versus plasticity of gd T cell subsets ChIP-seq Mus musculus 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42098/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42098/ E-GEOD-42007 A Kinetic Analysis of Auxin-mediated Changes in Transcript Abundance in Arabidopsis Reveals New Mediators of Root Growth and Development transcription profiling by array Arabidopsis thaliana 48 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42007/E-GEOD-42007.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42007/E-GEOD-42007.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42007/ E-GEOD-41272 Genome-wide analysis of miRNA-mRNA interactions in the marrow microenvironment (HTS) other Homo sapiens 16 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41272/E-GEOD-41272.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41272/ E-GEOD-41165 Expression analysis of uninfected Boechera stricta and infected Boechera stricta with Puccinia monoica forming pseudoflowers using an Arabidopsis thaliana gene expression 4x72K array design from NimbleGen. transcription profiling by array Boechera stricta 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41165/E-GEOD-41165.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41165/E-GEOD-41165.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41165/ E-GEOD-40976 Identification of a microRNA expression signature for radiochemosensitivity of colorectal cancer cells, involving miRNAs-320a, -224, -132 and let7g transcription profiling by array Homo sapiens 35 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40976/E-GEOD-40976.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40976/E-GEOD-40976.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40976/ E-GEOD-40931 Genome-wide analysis of mRNA expression alterations of mucosa associated lymphoid tissue lymphoma translocation gene 1 (Malt1) -/- or Wild Type (WT) Naïve T cells induced to differentiate into (T helper) Th1 or Th17 cells transcription profiling by array Mus musculus 40 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40931/E-GEOD-40931.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40931/ E-GEOD-40891 miRNAs expressed in murine CD4+ T cells of splenocyte and lamina propria lymphocytes transcription profiling by array Mus musculus 2 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40891/E-GEOD-40891.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40891/E-GEOD-40891.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40891/ E-GEOD-40791 Usp44 binds centrin to regulate centrosome positioning and suppress tumorigenesis transcription profiling by array Homo sapiens 194 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40791/E-GEOD-40791.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40791/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40791/ E-GEOD-40634 Cancers originate preferentially in adult tissue stem cells transcription profiling by array Mus musculus 117 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40634/E-GEOD-40634.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40634/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40634/ E-GEOD-40482 Transcription profiling of Arabidopsis plants overexpressing SsCBF1 RNA-seq of coding RNA Arabidopsis thaliana 2 2013-09-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40482/ E-GEOD-40454 Mechanisms and rescue strategies of Calcineurin inhibitor mediated tolerance abrogation transcription profiling by array Rattus norvegicus 17 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40454/E-GEOD-40454.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40454/E-GEOD-40454.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40454/ E-GEOD-40026 Expression profiling of prostate cell lines by miRNA array transcription profiling by array Homo sapiens 5 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40026/E-GEOD-40026.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40026/E-GEOD-40026.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40026/ E-GEOD-39696 Tellurite-mediated cefotaxime (CTX) potentiation transcription profiling by array Escherichia coli K-12 9 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39696/E-GEOD-39696.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39696/E-GEOD-39696.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39696/ E-GEOD-39322 Gene expression during testis development in Duroc boars transcription profiling by array Sus scrofa 91 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39322/E-GEOD-39322.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39322/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39322/ E-GEOD-38998 RNA sequencing in fly heads to examine the effect of spermidine feeding on transcription in the ageing fly brain. RNA-seq of coding RNA Drosophila melanogaster 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38998/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38998/ E-GEOD-38782 A Toxoplasma dense granule protein, GRA24, modulates the early immune response to infection by promoting a direct and sustained host p38 MAPK activation transcription profiling by array Mus musculus 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38782/E-GEOD-38782.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38782/E-GEOD-38782.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38782/ E-GEOD-38658 Transcription repressor HANABA TARANU (HAN) controls flower development via integrating multiple hormone actions, floral organ specification and GATA3 family auto-regulation transcription profiling by array Arabidopsis thaliana 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38658/E-GEOD-38658.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38658/E-GEOD-38658.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38658/ E-GEOD-37464 Pleiotropic Effects of the Trichloroethylene-Associated P81S VHL Mutation on Metabolism, Apoptosis and ATM-Mediated DNA Damage Response transcription profiling by array Mus musculus 10 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37464/E-GEOD-37464.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37464/E-GEOD-37464.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37464/ E-GEOD-37445 Transcriptional Response to Nitrogen Limitation in Pelagibacter ubique transcription profiling by array Candidatus Pelagibacter ubique 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37445/E-GEOD-37445.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37445/E-GEOD-37445.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37445/ E-GEOD-34394 Three Distinct Phases of Regeneration-Specific Gene Expression in the Axolotl Blastema RNA-seq of coding RNA Ambystoma mexicanum, Mus musculus 20 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34394/E-GEOD-34394.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34394/ E-GEOD-34130 Ecotype specific nitrogen responses in the Arabidopsis root transcription profiling by array Arabidopsis thaliana 42 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34130/E-GEOD-34130.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34130/E-GEOD-34130.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34130/ E-GEOD-33544 Human B cell receptor light chain repertoire analysis in healthy individuals and SLE patients transcription profiling by array Homo sapiens 90 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33544/E-GEOD-33544.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33544/E-GEOD-33544.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33544/ E-GEOD-32401 Tnni2del175k mutant mice and their wild-type littermates using mRNA array and ChIP-seq ChIP-seq, transcription profiling by array Mus musculus 8 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32401/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32401/E-GEOD-32401.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32401/ E-GEOD-32166 tnni2 Binding Genome Seqences ChIP-seq Mus musculus 2 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32166/E-GEOD-32166.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32166/ E-GEOD-32163 The study of the differential expression profile in bone tissues between Tnni2del175k mutant mice and their wild-type littermates using mRNA array. transcription profiling by array Mus musculus 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32163/E-GEOD-32163.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32163/E-GEOD-32163.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32163/ E-GEOD-31944 The differences of the transcriptional profile between wide-type maize and transgenic ZmPIS maize (drought tolerance) by the assay of digital gene expression profile data RNA-seq of coding RNA Zea mays 14 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31944/E-GEOD-31944.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31944/ E-GEOD-31810 LHX2 in neural differentiation from hESCs H9 transcription profiling by array Homo sapiens 12 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31810/E-GEOD-31810.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31810/E-GEOD-31810.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31810/ E-GEOD-31617 Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 68 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31617/E-GEOD-31617.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31617/ E-GEOD-31616 microRNA expression of cancer and matched adjacent tissues from 7 testicular germ cell tumors and 10 transitional cell carcinomas of bladder RNA-seq of non coding RNA Homo sapiens 34 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31616/E-GEOD-31616.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31616/ E-GEOD-31614 mRNA expression of cancer and matched adjacent tissues of 7 testicular germ cell tumors and 10 transitional cell carcinomas of bladder RNA-seq of coding RNA Homo sapiens 34 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31614/E-GEOD-31614.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31614/ E-GEOD-26595 MicroRNA expression of primary gastric adenocarcinoma compared to non-cancer gastric tissue transcription profiling by array Homo sapiens 68 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26595/E-GEOD-26595.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26595/ E-GEOD-25467 Maize coleoptilar node development: WT vs. rtcs transcription profiling by array Zea mays 24 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-25467/E-GEOD-25467.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-25467/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-25467/ E-GEOD-24322 Stressor mRNA expression profiling of three different stressors in the water flea Daphnia magna transcription profiling by array Daphnia magna 51 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24322/E-GEOD-24322.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24322/E-GEOD-24322.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24322/ E-GEOD-24062 InvF ChIP-chip on Salmonella enterica serovar Typhimurium SL1344 ChIP-chip by tiling array Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 6 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24062/E-GEOD-24062.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24062/E-GEOD-24062.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24062/ E-GEOD-23965 S. cerevisiae L3262: Control vs. SPT15 multiple point mutant strains, Ets2 and Ets3 transcription profiling by array Saccharomyces cerevisiae 4 2013-09-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23965/E-GEOD-23965.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23965/E-GEOD-23965.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23965/ E-MTAB-1666 RNA-seq of coding RNA of liver samples from BN-Lx/Cub and SHR/Olalpcv strains of laboratory rats RNA-seq of coding RNA Rattus norvegicus 8 2013-08-31 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1666/ E-MTAB-1254 Identification of circulating microRNAs as diagnostic biomarkers for use in multiple myeloma microRNA profiling by array Homo sapiens 8 2013-08-31 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1254/E-MTAB-1254.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1254/ E-MEXP-3939 Transcription profiling by array of tobacco By2 cells in response to 250 mM Nacl after 30 min or 90 min treatment measured with heterologus TOM1 (tomato) cDNA microarrays transcription profiling by array Nicotiana tabacum 6 2013-08-31 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3939/E-MEXP-3939.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3939/ E-GEOD-50485 Aspergillus nidulans : Wild type Fructose x Xylose transcription profiling by array Aspergillus nidulans FGSC A4 6 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50485/E-GEOD-50485.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50485/E-GEOD-50485.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50485/ E-GEOD-50477 Effect of L-Proline on mouse embryonic stem cells (ESCs) ChIP-seq Mus musculus 5 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50477/E-GEOD-50477.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50477/ E-GEOD-50388 miRNAs expression in two soybean root with contrasting cadmium tolerance transcription profiling by array Glycine max 4 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50388/E-GEOD-50388.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50388/E-GEOD-50388.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50388/ E-GEOD-49816 Evaluation of quantitative miRNA gene expression platforms in the microRNA Quality Control (miRQC) study RNA-seq of non coding RNA Enterobacterio phage MS2, Homo sapiens 20 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49816/E-GEOD-49816.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49816/ E-GEOD-49625 Promiscuous gene expression in human medullary thymic epithelial cell subsets transcription profiling by array Homo sapiens 26 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49625/E-GEOD-49625.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49625/ E-GEOD-49380 Whole genome expression analysis of tumor regulatory T cells expressing interleukin-10 transcription profiling by array Mus musculus 12 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49380/E-GEOD-49380.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49380/E-GEOD-49380.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49380/ E-GEOD-49001 Mining the genome of Arabidopsis thaliana as a basis for the identification of novel bioactive peptides involved in oxidative stress tolerance transcription profiling by tiling array Arabidopsis thaliana 4 2013-08-31 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49001/E-GEOD-49001.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49001/ E-GEOD-48500 Effect of overexpression of the rice WRKY transcription factor OsWRKY53 or its phospho-mimicking mutant on rice leaves 48 h after either mock treatment or the rice blast fungus Magnaporthe Oryzae infection transcription profiling by array Oryza sativa 40 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48500/E-GEOD-48500.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48500/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48500/ E-GEOD-48413 Examination of DPY-30, DPY-27, SDC-3, DPY-26, DPY-28, SDC-2, and SUMOylated DPY-27 binding in wild type embryos and smo-1 RNAi treated embryos comparative genomic hybridization by array Caenorhabditis elegans 35 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48413/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48413/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48413/ E-GEOD-48347 C. elegans mixed stage embryo total RNA levels by microarray: L4440 RNAi, smo-1 RNAi and sdc-2 (y93)+RNAi transcription profiling by array Caenorhabditis elegans 9 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48347/E-GEOD-48347.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48347/E-GEOD-48347.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48347/ E-GEOD-48257 Gene expression analysis of H9 hESC derived cardiomyocytes (CM) and neuron stem cells (NSC) transcription profiling by array Homo sapiens 9 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48257/E-GEOD-48257.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48257/E-GEOD-48257.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48257/ E-GEOD-48143 Expression analysis of Lactococcus lactis NIAI712 and its plasmid cured variant transcription profiling by array Lactococcus lactis subsp. cremoris 2 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48143/E-GEOD-48143.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48143/E-GEOD-48143.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48143/ E-GEOD-47343 Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing methylation profiling by high throughput sequencing Enterobacteria phage lambda, Mus musculus 36 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47343/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47343/ E-GEOD-47170 Expression analysis of Streptococcus mutans UA159 under Hyperosmotic stress environment transcription profiling by array Streptococcus mutans UA159 6 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47170/E-GEOD-47170.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47170/E-GEOD-47170.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47170/ E-GEOD-43973 Age-associated gene expression in normal breast tissue mirrors qualitative age-at-incidence patterns for breast cancer transcription profiling by array Homo sapiens 148 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43973/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43973/ E-GEOD-43543 Mediator directs co-transcriptional heterochromatin assembly by RNAi-dependent and -independent pathways. transcription profiling by array Schizosaccharomyces pombe 14 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43543/E-GEOD-43543.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43543/E-GEOD-43543.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43543/ E-GEOD-43510 Gene expression profiling of five diffuse large B-cell lymphoma (DLBCL) cell lines, DHL4, DHL6, LY7, HBL1 and U2932, treated with the SYK inhibitor, R406 transcription profiling by array Homo sapiens 75 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43510/E-GEOD-43510.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43510/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43510/ E-GEOD-40673 An allele-aware approach identifies altered nuclear associations of the contracted D4Z4 array at the FSHD locus other Homo sapiens 10 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40673/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40673/ E-GEOD-40517 Selective Requirement for Mediator MED23 in Ras-active Lung Cancer transcription profiling by array Homo sapiens 9 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40517/E-GEOD-40517.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40517/E-GEOD-40517.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40517/ E-GEOD-39831 Profiling of miRNA expression in mouse SHAM kidneys transcription profiling by array Mus musculus 7 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39831/E-GEOD-39831.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39831/E-GEOD-39831.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39831/ E-GEOD-39315 Contribution of the mammary epithelial cell to the immune response during early stages of a bacterial infection to Staphylococcus aureus in goats transcription profiling by array Capra hircus 20 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39315/E-GEOD-39315.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39315/E-GEOD-39315.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39315/ E-GEOD-38522 Comparison of osmotic stress related gene expression in Col-0, sid2-1 single, wrky54wrky70 double and wrky54wrky70sid2-1 triple mutants. transcription profiling by array Arabidopsis thaliana 24 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38522/E-GEOD-38522.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38522/ E-GEOD-36786 Transcritptome of a reeS deletion mutant of Clostridium perfringens during exponential phase growth. transcription profiling by array Clostridium perfringens str. 13 4 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36786/E-GEOD-36786.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36786/E-GEOD-36786.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36786/ E-GEOD-35279 Gene expression profiles in 74 laser microdissected colorectal cancer tissues transcription profiling by array Homo sapiens 79 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35279/E-GEOD-35279.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35279/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35279/ E-GEOD-29275 Comparison of the expression profiles of 630E strain and a sigD mutant after 6h of growth. transcription profiling by array [Clostridium] difficile 4 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29275/E-GEOD-29275.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29275/E-GEOD-29275.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29275/ E-GEOD-27276 Genome-wide Expression of Trabecular Meshwork in POAG transcription profiling by array Homo sapiens 36 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27276/E-GEOD-27276.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27276/ E-GEOD-23590 Gene expression data from compstatin treated E.coli-Induced primate sepsis model transcription profiling by array Papio cynocephalus 23 2013-08-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23590/E-GEOD-23590.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23590/E-GEOD-23590.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23590/ E-MTAB-1748 RNA-seq of coding RNAs from Indo-Pacific humpback dolphin (Chinese White Dolphin) leucocytes for de-novo assembly of its transcriptome RNA-seq of coding RNA Sousa chinensis 1 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1748/E-MTAB-1748.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1748/ E-MTAB-1621 Transcription profiling by array of blood-fed and sugar-fed mosquitoes adult females to investigate blood feeding response transcription profiling by array Anopheles gambiae 6 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1621/E-MTAB-1621.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1621/E-MTAB-1621.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1621/ E-MTAB-1415 ChIP-seq of adult wild-type rar liver cells to study genome wide location of HNF4a, FoxA1 CEBPA ChIP-seq Rattus norvegicus 8 2013-08-30 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1415/ E-MTAB-1414 ChIP-seq of mouse adult liver cells to investigate transcription factor binding region between five species ChIP-seq Mus caroli, Mus castaneus, Mus musculus, Mus spretus 58 2013-08-30 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1414/ E-MEXP-3725 Transcription profiling by array of human akt-activated endothelial cells and mesenchymal progenitors to compare the cytokines and membrane factors that are differentially expressed transcription profiling by array Homo sapiens 6 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3725/E-MEXP-3725.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3725/E-MEXP-3725.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3725/ E-GEOD-50513 Identify genes regulated by zip-2 in absence and presence of P. aeruginosa PA14 infection at 4h transcription profiling by array Caenorhabditis elegans 12 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50513/E-GEOD-50513.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50513/E-GEOD-50513.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50513/ E-GEOD-50511 Methylation analysis of normal lymphocytes, HCT116, RKO and SW480 methylation profiling by array Homo sapiens 4 2013-08-30 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50511/ E-GEOD-50510 Gene expression data for mock and 5-Aza-CdR treated colorectal cancer (CRC) cell lines SW480, HCT116 and RKO transcription profiling by array Homo sapiens 7 2013-08-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50510/E-GEOD-50510.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50510/ E-GEOD-50472 Applied Biosystems Human TaqMan Low Density Array (TLDA) in plasma samples from EOC cases and controls transcription profiling by RT-PCR Homo sapiens 3 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50472/E-GEOD-50472.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50472/ E-GEOD-50468 Transcriptome microarray of wildtype, relA, expI and rpoS Pectobacterium atrosepticum strains in PMB media transcription profiling by array Pectobacterium atrosepticum SCRI1043 24 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50468/E-GEOD-50468.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50468/E-GEOD-50468.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50468/ E-GEOD-50467 Effect of SRSF2 over-expression in a human lung carcinoma cell line transcription profiling by array Homo sapiens 12 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50467/E-GEOD-50467.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50467/E-GEOD-50467.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50467/ E-GEOD-50452 High-throughput identification of miRNA targets using CLASH (crosslinking, ligation and sequencing of hybrids) other , Homo sapiens, Saccharomyces cerevisiae 10 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50452/E-GEOD-50452.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50452/ E-GEOD-50446 Transcriptional profiling of Neurospora crassa conidia undergoing germling fusion: ?pp-1 vs WT transcription profiling by array, RNA-seq of coding RNA Neurospora crassa OR74A 2 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50446/E-GEOD-50446.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50446/ E-GEOD-50435 The role of membrane fluidity in low temperature perception transcription profiling by array Arabidopsis thaliana 12 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50435/E-GEOD-50435.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50435/E-GEOD-50435.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50435/ E-GEOD-50432 Gene expression in the spleen; effect of maternal exposure to carbon black nanoparticle transcription profiling by array Mus musculus 4 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50432/E-GEOD-50432.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50432/E-GEOD-50432.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50432/ E-GEOD-50425 Characterizing the wound healing response that drives human epidermal maturation on transcriptome level transcription profiling by array Homo sapiens 12 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50425/E-GEOD-50425.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50425/ E-GEOD-50385 Expression data from human ependymoma transcription profiling by array Homo sapiens 65 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50385/E-GEOD-50385.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50385/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50385/ E-GEOD-50382 Effects of neonatal stress and morphine on murine hippocampal gene expression transcription profiling by array Mus musculus 15 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50382/E-GEOD-50382.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50382/E-GEOD-50382.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50382/ E-GEOD-50377 Mining gene expression data for low doses of radiation and pollutants (dioxin, toluene, formaldehyde) RNA-seq of coding RNA Drosophila melanogaster 10 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50377/E-GEOD-50377.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50377/ E-GEOD-50194 Identification of candidate microRNAs in colorectal adenomas and adenocarcinomas transcription profiling by array Homo sapiens, synthetic construct 48 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50194/E-GEOD-50194.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50194/E-GEOD-50194.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50194/ E-GEOD-49958 Gene expression in human umbilical cord vein and artery endothelial cells under physiological chronic normoxia (3% O2, PCN) and standard culture normoxia (21% O2, SCN) transcription profiling by array Homo sapiens 23 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49958/E-GEOD-49958.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49958/E-GEOD-49958.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49958/ E-GEOD-49699 Hippocampal Gene Expression in Young and Adult Mice with Memory Deficits transcription profiling by array Mus musculus 16 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49699/E-GEOD-49699.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49699/E-GEOD-49699.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49699/ E-GEOD-49542 Methylation profiles in non-alcoholic fatty liver disease methylation profiling by array Homo sapiens 59 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49542/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49542/ E-GEOD-49541 Expression data for Nonalcoholic fatty liver disease patients transcription profiling by array Homo sapiens 72 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49541/E-GEOD-49541.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49541/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49541/ E-GEOD-48779 Morphological, genomic, and transcriptomic characterization of heterogeneity in chordoma cells transcription profiling by array Homo sapiens 6 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48779/E-GEOD-48779.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48779/E-GEOD-48779.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48779/ E-GEOD-47445 Adaption of Dinoroseobacter shibae to anaerobic conditions transcription profiling by array Dinoroseobacter shibae 40 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47445/E-GEOD-47445.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47445/E-GEOD-47445.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47445/ E-GEOD-46648 Identification of DNA methylation changes in monocytes to osteoclast differentiation methylation profiling by array Homo sapiens 6 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46648/E-GEOD-46648.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46648/ E-GEOD-46554 Genome-scale expression and transcription factor binding profiles reveal therapeutic targets in transgenic ERG myeloid leukemia ChIP-seq Mus musculus 4 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46554/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46554/ E-GEOD-45228 Exposure of Bacillus VOCs vs. Control transcription profiling by array Escherichia coli str. K-12 substr. MG1655 12 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45228/E-GEOD-45228.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45228/E-GEOD-45228.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45228/ E-GEOD-44587 Crizotinib inhibits metabolic inactivation of gemcitabine in ortothopic pancreatic tumors derived from primary cells with c-Met overexpression comparative genomic hybridization by array Homo sapiens 8 2013-08-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44587/E-GEOD-44587.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44587/ E-GEOD-43900 Co-ordinate inhibition of autism candidate genes by topoisomerase inhibitors ChIP-seq, transcription profiling by array, RNA-seq of coding RNA Homo sapiens, Mus musculus 70 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43900/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43900/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43900/ E-GEOD-43899 Co-ordinate inhibiton of autism candidate genes by topoisomerase inhibitors [array] transcription profiling by array Mus musculus 56 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43899/E-GEOD-43899.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43899/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43899/ E-GEOD-43710 Type I and type III interferons drive redundant amplification loops to induce a transcriptional signature in influenza-infected airway epithelia transcription profiling by array Mus musculus 62 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43710/E-GEOD-43710.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43710/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43710/ E-GEOD-43709 Expression data from Influenza A infected mouse primary tracheal epithelial cell cultures (MTEC), from both wild-type and MAVS-/- mice transcription profiling by array Mus musculus 12 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43709/E-GEOD-43709.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43709/E-GEOD-43709.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43709/ E-GEOD-43708 Expression data from Influenza A infected mouse primary tracheal epithelial cell cultures (MTEC), from wild-type, IFNAR1-/-, IL28Ra-/- and IFNAR1-/- IL28Ra-/- double ko transcription profiling by array Mus musculus 40 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43708/E-GEOD-43708.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43708/E-GEOD-43708.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43708/ E-GEOD-43707 Expression data from Influenza A infected mouse primary tracheal epithelial cell cultures (MTEC) transcription profiling by array Mus musculus 10 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43707/E-GEOD-43707.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43707/E-GEOD-43707.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43707/ E-GEOD-43526 Co-ordinate inhibition of autism candidate genes by topoisomerase inhibitors [Seq] ChIP-seq, RNA-seq of coding RNA Homo sapiens, Mus musculus 14 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43526/E-GEOD-43526.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43526/ E-GEOD-40938 Detailed analysis of 6p and 1q amplifications in urothelial carcinoma reveals SOX4 as an auxiliary target on 6p, and BCL9, CHDL1, MCL1, SETDB1, and HIF1B as putative targets on 1q. comparative genomic hybridization by array Homo sapiens 68 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40938/E-GEOD-40938.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40938/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40938/ E-GEOD-40571 Clinical Monoclonal B lymphocytosis versus Rai 0 Chronic Lymphocytic Leukemia: a comparison of the cellular, molecular, cytogenetic features and clinical course in a prospective multicenter study transcription profiling by array Homo sapiens 310 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40571/E-GEOD-40571.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40571/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40571/ E-GEOD-40570 Clinical Monoclonal B lymphocytosis versus Rai 0 Chronic Lymphocytic Leukemia: a comparison of the cellular, molecular, cytogenetic features and clinical course in a prospective multicenter study [mRNA] transcription profiling by array Homo sapiens 160 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40570/E-GEOD-40570.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40570/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40570/ E-GEOD-40533 Clinical Monoclonal B lymphocytosis versus Rai 0 Chronic Lymphocytic Leukemia: a comparison of the cellular, molecular, cytogenetic features and clinical course in a prospective multicenter study [miRNA] transcription profiling by array Homo sapiens 150 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40533/E-GEOD-40533.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40533/E-GEOD-40533.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40533/ E-GEOD-34444 The Autonomous Hepatocyte Clock Controls Acetaminophen Bioactivation and Chronotoxicity transcription profiling by array Mus musculus 48 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34444/E-GEOD-34444.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34444/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34444/ E-GEOD-34443 The Autonomous Hepatocyte Clock Controls Acetaminophen Bioactivation and Chronotoxicity [Kidney] transcription profiling by array Mus musculus 24 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34443/E-GEOD-34443.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34443/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34443/ E-GEOD-34442 The Autonomous Hepatocyte Clock Controls Acetaminophen Bioactivation and Chronotoxicity [Liver] transcription profiling by array Mus musculus 24 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34442/E-GEOD-34442.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34442/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34442/ E-GEOD-33805 The Human Oviductal Transcriptome Reveals An Anti-inflammatory, Anti-angiogenic, Secretory and Matrix-stable Environment During Embryo Transit transcription profiling by array Homo sapiens 6 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33805/E-GEOD-33805.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33805/E-GEOD-33805.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33805/ E-GEOD-31803 Methylome-Transcriptome Relationships in Nonalcoholic Fatty Liver Disease transcription profiling by array, methylation profiling by array Homo sapiens 131 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31803/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31803/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31803/ E-GEOD-25072 Expression profiling data of Mta1 from E9.0 mouse embryonic fibroblasts transcription profiling by array Mus musculus 15 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-25072/E-GEOD-25072.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-25072/ E-GEOD-23693 Aberrant silencing of cancer-related genes by CpG hypermethylation occurs independently of their spatial organization in the nucleus transcription profiling by array, methylation profiling by array Homo sapiens 11 2013-08-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23693/E-GEOD-23693.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23693/ E-GEOD-20738 The shuttling SR-like proteins Gbp2 and Hrb1 mediate the nuclear export of spliced mRNAs transcription profiling by array Saccharomyces cerevisiae 2 2013-08-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20738/E-GEOD-20738.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20738/E-GEOD-20738.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-20738/ E-MTAB-1687 RNA-seq of coding RNA from human embryonic stem cells after spliceosome-associated factor SON knockdown RNA-seq of coding RNA Homo sapiens 12 2013-08-29 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1687/ E-GEOD-50415 Comparison of Genome-Wide Binding of MyoD in Normal Human Myogenic Cells and Rhabdomyosarcomas Identifies Regional and Local Suppression of Promyogenic Transcription Factors ChIP-seq, transcription profiling by array Homo sapiens 10 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50415/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50415/ E-GEOD-50413 Comparison of Genome-Wide Binding of MyoD in Normal Human Myogenic Cells and Rhabdomyosarcomas Identifies Regional and Local Suppression of Promyogenic Transcription Factors (expression profiling). ChIP-seq Homo sapiens 4 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50413/E-GEOD-50413.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50413/ E-GEOD-50412 Identification of CpG island methylator phenotype predicts the prognosis of small cell lung cancer methylation profiling by array Homo sapiens 41 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50412/E-GEOD-50412.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50412/ E-GEOD-50411 Comparison of Genome-Wide Binding of MyoD in Normal Human Myogenic Cells and Rhabdomyosarcomas Identifies Regional and Local Suppression of Promyogenic Transcription Factors (MyoD ChIP-Seq profiling). transcription profiling by array Homo sapiens 6 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50411/E-GEOD-50411.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50411/ E-GEOD-50409 Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients methylation profiling by array Homo sapiens 428 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50409/E-GEOD-50409.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50409/ E-GEOD-50408 Expression data from Soybean leaves under drought stress and normally irrigated transcription profiling by array Glycine max 14 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50408/E-GEOD-50408.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50408/E-GEOD-50408.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50408/ E-GEOD-50403 Bisphosphonate effect on murine whole draining lymph nodes before and 8 hours after VSV infection transcription profiling by array Mus musculus 8 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50403/E-GEOD-50403.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50403/E-GEOD-50403.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50403/ E-GEOD-50402 Transcriptional profile of tomato roots exhibiting Bacillus thuringiensis-induced resistance to Ralstonia solanacearum transcription profiling by array Solanum lycopersicum 8 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50402/E-GEOD-50402.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50402/E-GEOD-50402.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50402/ E-GEOD-50393 Genome-wide analysis of gene expression in LIF and LIF plus CHIR99021 in C57BL/6 mouse embryonic stem cells(B6 mESCs) transcription profiling by array Mus musculus 2 2013-08-29 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50393/ E-GEOD-50218 The organizational effects of testosterone on brain DNA methylome methylation profiling by high throughput sequencing Mus musculus domesticus 24 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50218/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50218/ E-GEOD-50042 Inhibition of phosphodiesterase-4 promotes oligodendrocyte precursor cell differentiation and enhances CNS remyelination transcription profiling by array, unknown experiment type Rattus norvegicus 15 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50042/E-GEOD-50042.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50042/E-GEOD-50042.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50042/ E-GEOD-49986 The organizational effects of testosterone on brain DNA methylome transcription profiling by array Mus musculus 57 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49986/E-GEOD-49986.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49986/ E-GEOD-46742 A transcriptome-wide atlas of RNP compositions reveals diverse classes of mRNAs and lncRNAs other Saccharomyces cerevisiae 31 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46742/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46742/ E-GEOD-44786 Rat mammary cancer (spontaneous, radiation, MNU, PhIP, radiation + MNU, radiation + PhIP) (high corn oil diet) transcription profiling by array Rattus norvegicus 36 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44786/E-GEOD-44786.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44786/E-GEOD-44786.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44786/ E-GEOD-44542 Rhesus macaque model of hCoV-EMC respiratory infection transcription profiling by array Macaca mulatta 38 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44542/E-GEOD-44542.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44542/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44542/ E-GEOD-40715 Gene signature of adult mammary stem cells and mammary cancer stem cells transcription profiling by RT-PCR, transcription profiling by array Mus musculus 41 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40715/E-GEOD-40715.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40715/E-GEOD-40715.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40715/ E-GEOD-40704 Gene signature of adult mammary stem cells and mammary cancer stem cells (RT_PCR) transcription profiling by RT-PCR Mus musculus 17 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40704/E-GEOD-40704.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40704/ E-GEOD-40702 Gene signature of adult mammary stem cells and mammary cancer stem cells (Affymetrix) transcription profiling by array Mus musculus 24 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40702/E-GEOD-40702.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40702/E-GEOD-40702.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40702/ E-GEOD-36382 Individual array-based gene expression patterns generated using total RNA prepared from whole blood of 991 participants of the SHIP-TREND cohort transcription profiling by array Homo sapiens 991 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36382/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36382/ E-GEOD-31048 Expression data from normal B cells and chronic lymphocytic leukemia B cells -- with/without treatment of Wnt3a transcription profiling by array Homo sapiens 221 2013-08-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31048/E-GEOD-31048.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31048/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31048/ E-ERAD-75 Transcriptomics in antigenically selected lines of Plasmodium falciparum (FRT-Seq) RNA-seq of coding RNA Plasmodium falciparum 4 2013-08-29 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-75/ E-TABM-1145 RNAi knockdown of Tip60 and Usp7 in mouse 3T3-L1 adipocytes transcription profiling by array Mus musculus 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-TABM-1145/E-TABM-1145.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-TABM-1145/E-TABM-1145.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-1145/ E-MTAB-1761 Transcription profiling by array of tumor samples from hematopoietic stem cell transplantation (HSCT) and control mice to investigate cytokine levels transcription profiling by array Mus musculus 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1761/E-MTAB-1761.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1761/E-MTAB-1761.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1761/ E-MEXP-3764 Transcription profiling by array of Pseudomonas aeruginosa treated with fosfomycin, tobramycin or a combination of both drugs under aerobic and anaerobic conditions transcription profiling by array Pseudomonas aeruginosa 24 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3764/E-MEXP-3764.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3764/E-MEXP-3764.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3764/ E-MEXP-3354 Transcription profiling by array of Arabidopsis seedlings using wild-type and CRK36 RNAi transgenic plants growing on plates containing abscisic acid transcription profiling by array Arabidopsis thaliana 4 2013-08-28 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3354/E-MEXP-3354.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3354/ E-GEOD-50386 Epigenomic plasticity enables human pancreatic alpha to beta cell reprogramming ChIP-seq, RNA-seq of coding RNA Homo sapiens 44 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50386/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50386/ E-GEOD-50381 Expression data in KSHV-infected primary rat mesenchymal precursor (MM) cells transcription profiling by array Rattus norvegicus 18 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50381/E-GEOD-50381.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50381/ E-GEOD-50379 Expression data from striatum of a mouse model of Huntington´s disease (HD) (HdhQ111/Q111) crossed with mGluR5 knockout mice (mGluR5-/-) and their respective controls (HdhQ20/Q20 and mGluR5+/+). transcription profiling by array Mus musculus 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50379/E-GEOD-50379.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50379/E-GEOD-50379.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50379/ E-GEOD-50376 Zebrafish transcriptomics in 24 and 36 hpf embryos after knockdown of glucocorticoid receptor translation transcription profiling by array Danio rerio 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50376/E-GEOD-50376.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50376/E-GEOD-50376.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50376/ E-GEOD-50375 yki_8-16h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 6 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50375/ E-GEOD-50374 Trl_8-16h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 6 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50374/ E-GEOD-50373 Notch-GFP_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50373/ E-GEOD-50372 lola-PI-GFP_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50372/ E-GEOD-50371 insv_Kc_cells_ChIP-seq ChIP-seq Drosophila melanogaster 6 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50371/ E-GEOD-50370 Hr78-GFP_8-16_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50370/ E-GEOD-50369 H3K4me3_S2_cells_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50369/ E-GEOD-50368 H3K4me3_8-16h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50368/ E-GEOD-50367 H3K4me1_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50367/ E-GEOD-50366 H3K4me1_S2_cells_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50366/ E-GEOD-50365 cmi_0-8h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50365/ E-GEOD-50364 CG8478_S2_cells_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50364/ E-GEOD-50363 Abd-B-GFP_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50363/ E-GEOD-50362 Abd-B-GFP_vMock_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50362/ E-GEOD-50361 H3K4me3_WPP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50361/ E-GEOD-50360 USP-GFP_0-12-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50360/ E-GEOD-50359 USP-GFP_WPP+12-seq ChIP-seq Drosophila melanogaster 6 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50359/ E-GEOD-50358 Usp_W3L ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50358/ E-GEOD-50357 TCF_16-24-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50357/ E-GEOD-50356 Su(Hw)_WPP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50356/ E-GEOD-50355 Su(Hw)_16-24-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50355/ E-GEOD-50354 Stat92E_WPP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50354/ E-GEOD-50353 Sin3A_Kc-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50353/ E-GEOD-50352 sc_0-12-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50352/ E-GEOD-50351 psq_WPP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50351/ E-GEOD-50350 Prd-RF13_0-12-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50350/ E-GEOD-50349 Prd-RF12_0-12-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50349/ E-GEOD-50348 mod(mdg4)_W3L-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50348/ E-GEOD-50347 Fru_0-8-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50347/ E-GEOD-50346 CNC_AdultFemale-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50346/ E-GEOD-50345 CNC_16-24-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50345/ E-GEOD-50344 CG8478_WPP_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50344/ E-GEOD-50343 CG16778_0-8h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50343/ E-GEOD-50342 broad_0-8h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50342/ E-GEOD-50341 Dfd-GFP_0-8h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50341/ E-GEOD-50340 TCF_0-8h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50340/ E-GEOD-50339 scute_0-8h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50339/ E-GEOD-50338 homothorax_0-8h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50338/ E-GEOD-50337 Su(H)_8-16h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50337/ E-GEOD-50336 seq-SDQ5421_CEC7_fem2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50336/E-GEOD-50336.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50336/ E-GEOD-50335 seq-SDQ5413_CEC7_fem2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50335/E-GEOD-50335.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50335/ E-GEOD-50334 seq-ab817_8WG16_639746_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50334/E-GEOD-50334.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50334/ E-GEOD-50333 seq-SDQ3927_MRG1_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50333/E-GEOD-50333.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50333/ E-GEOD-50332 seq-SDQ3838_T26A5.5_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50332/E-GEOD-50332.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50332/ E-GEOD-50331 seq-302-32369_H3K9me2_ojIs9_YA_germline ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50331/E-GEOD-50331.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50331/ E-GEOD-50330 seq-SDQ2382_him5_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50330/E-GEOD-50330.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50330/ E-GEOD-50329 seq-SDQ4663_RPC1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50329/E-GEOD-50329.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50329/ E-GEOD-50328 seq-SDQ4640_SWD3_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50328/E-GEOD-50328.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50328/ E-GEOD-50327 seq-SDQ4585_ASH2_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50327/E-GEOD-50327.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50327/ E-GEOD-50326 seq-SDQ4564_DPY28_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50326/E-GEOD-50326.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50326/ E-GEOD-50325 seq-SDQ4562_SMC6_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50325/E-GEOD-50325.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50325/ E-GEOD-50324 seq-SDQ0809_COH1_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50324/E-GEOD-50324.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50324/ E-GEOD-50323 seq-SDQ4561_DPY26_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50323/E-GEOD-50323.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50323/ E-GEOD-50322 seq-SDQ3914_REC8_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50322/E-GEOD-50322.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50322/ E-GEOD-50321 seq-SDQ0802_REC8_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50321/E-GEOD-50321.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50321/ E-GEOD-50320 seq-G0655G0656_HTP3_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50320/E-GEOD-50320.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50320/ E-GEOD-50319 seq-SDQ4496_DPY26_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50319/E-GEOD-50319.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50319/ E-GEOD-50318 seq-SDQ4493_MAU2_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50318/E-GEOD-50318.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50318/ E-GEOD-50317 seq-SDQ4481_PQN85_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50317/E-GEOD-50317.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50317/ E-GEOD-50316 seq-SDQ4154_IMB1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50316/E-GEOD-50316.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50316/ E-GEOD-50315 seq-HK00001-H3K36me3_13C9_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50315/E-GEOD-50315.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50315/ E-GEOD-50314 seq-Ab6002_H3K27me3_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50314/E-GEOD-50314.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50314/ E-GEOD-50313 seq-SDQ4109_TAF1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50313/E-GEOD-50313.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50313/ E-GEOD-50312 seq-Ab8895_H3K4me1_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50312/E-GEOD-50312.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50312/ E-GEOD-50311 seq-Ab9048_H3K36me1_fem2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50311/E-GEOD-50311.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50311/ E-GEOD-50310 seq-SDQ3892_MIX1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50310/E-GEOD-50310.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50310/ E-GEOD-50309 seq-SDQ3856_SDC1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50309/E-GEOD-50309.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50309/ E-GEOD-50308 seq-SDQ3582_CBP1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50308/E-GEOD-50308.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50308/ E-GEOD-50307 seq-SDQ3499_DPY30_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50307/E-GEOD-50307.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50307/ E-GEOD-50306 seq-SDQ2357Q2358_AMA1_N2_Mxemb_RiIMB1 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50306/E-GEOD-50306.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50306/ E-GEOD-50305 seq-SDQ2357Q2358_AMA1_N2_Mxemb_EE ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50305/E-GEOD-50305.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50305/ E-GEOD-50304 seq-SDQ0839_TBP1_N2_Mxemb_EE ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50304/E-GEOD-50304.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50304/ E-GEOD-50303 seq-OD0039_SMC4_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50303/E-GEOD-50303.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50303/ E-GEOD-50302 seq-NBP170893_HTZ1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50302/E-GEOD-50302.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50302/ E-GEOD-50301 seq-JL00006_ZFP1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50301/E-GEOD-50301.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50301/ E-GEOD-50300 seq-ab9051_H4K20me1_TY1072_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50300/E-GEOD-50300.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50300/ E-GEOD-50299 seq-SDQ4625_T09A5.8_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50299/E-GEOD-50299.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50299/ E-GEOD-50298 seq-ab15823_H4K8ac_487128_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50298/E-GEOD-50298.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50298/ E-GEOD-50297 seq-SDQ3528_NURF1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50297/E-GEOD-50297.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50297/ E-GEOD-50296 seq-SDQ3525_NURF1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50296/E-GEOD-50296.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50296/ E-GEOD-50295 seq-SDQ2940_NURF1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50295/E-GEOD-50295.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50295/ E-GEOD-50294 seq-HM4077_LIN61_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50294/E-GEOD-50294.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50294/ E-GEOD-50293 seq-SDQ2342_LET418_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50293/E-GEOD-50293.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50293/ E-GEOD-50292 seq-SDQ3861_LET418_N2_L3 ChIP-seq Caenorhabditis elegans 3 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50292/E-GEOD-50292.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50292/ E-GEOD-50291 seq-SDQ2354_HDA1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50291/E-GEOD-50291.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50291/ E-GEOD-50290 seq-WA30834809_H3K4me2_ojIs9_YA_germline ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50290/E-GEOD-50290.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50290/ E-GEOD-50289 seq-ab45142_H2AK5ac_FEM2_YA ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50289/E-GEOD-50289.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50289/ E-GEOD-50288 seq-ab45142_H2AK5ac_ojIs9_YA_germline ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50288/E-GEOD-50288.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50288/ E-GEOD-50287 seq-WA30534799_H3K4me1_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50287/E-GEOD-50287.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50287/ E-GEOD-50286 seq-WA30335199_H3Ser10_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50286/E-GEOD-50286.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50286/ E-GEOD-50285 seq-SDQ4713_HIM3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50285/E-GEOD-50285.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50285/ E-GEOD-50284 seq-SDQ4498_HIM3_FEM2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50284/E-GEOD-50284.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50284/ E-GEOD-50283 seq-SDQ4068_MRG1_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50283/E-GEOD-50283.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50283/ E-GEOD-50282 seq-SDQ3989_ASH2_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50282/E-GEOD-50282.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50282/ E-GEOD-50281 seq-SDQ3972_COH3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50281/E-GEOD-50281.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50281/ E-GEOD-50280 seq-SDQ3965_ZIM1_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50280/E-GEOD-50280.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50280/ E-GEOD-50279 seq-SDQ3956_ZHP3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50279/E-GEOD-50279.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50279/ E-GEOD-50278 seq-SDQ3953_REC8_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50278/E-GEOD-50278.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50278/ E-GEOD-50277 seq-SDQ3949_ZIM3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50277/E-GEOD-50277.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50277/ E-GEOD-50276 seq-SDQ3948_COH3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50276/E-GEOD-50276.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50276/ E-GEOD-50275 seq-SDQ3942_KLE2_FEM2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50275/E-GEOD-50275.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50275/ E-GEOD-50274 seq-SDQ3927_MRG1_FEM2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50274/E-GEOD-50274.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50274/ E-GEOD-50273 seq-SDQ3925_ZHP3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50273/E-GEOD-50273.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50273/ E-GEOD-50272 seq-SDQ3907_CHD3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50272/E-GEOD-50272.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50272/ E-GEOD-50271 seq-SDQ3866_MRE11_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50271/E-GEOD-50271.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50271/ E-GEOD-50270 seq-SDQ3853_MSH5_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50270/E-GEOD-50270.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50270/ E-GEOD-50269 seq-SDQ3849_CHD3_FEM2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50269/E-GEOD-50269.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50269/ E-GEOD-50268 seq-SDQ2366_MRE11_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50268/E-GEOD-50268.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50268/ E-GEOD-50267 seq-SDQ2356_MRE11_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50267/E-GEOD-50267.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50267/ E-GEOD-50266 seq-SDQ0835_SCC1_FEM2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50266/E-GEOD-50266.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50266/ E-GEOD-50265 seq-Ab52946_H3K14ac_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50265/E-GEOD-50265.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50265/ E-GEOD-50264 seq-HK00001_H3K36me3_13C9_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50264/E-GEOD-50264.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50264/ E-GEOD-50263 seq-HK00012_H3K36me2_2C3_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50263/E-GEOD-50263.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50263/ E-GEOD-50262 seq-ab8895_H3K4me1_733246_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50262/E-GEOD-50262.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50262/ E-GEOD-50261 seq-UP07442_H3K9me3_DAM1411287_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50261/E-GEOD-50261.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50261/ E-GEOD-50260 seq-SN147_H4K20me1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50260/E-GEOD-50260.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50260/ E-GEOD-50259 seq-ab1791_H3_377098_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50259/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50259/ E-GEOD-50258 seq-SDQ2370_LIN53_N2_LTemb ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50258/E-GEOD-50258.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50258/ E-GEOD-50257 seq-SDQ0811_RAD51_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50257/E-GEOD-50257.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50257/ E-GEOD-50256 seq-SDQ0801_HIM17_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50256/E-GEOD-50256.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50256/ E-GEOD-50255 seq-SDQ2370_LIN53_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50255/E-GEOD-50255.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50255/ E-GEOD-50245 Dual leucine zipper kinase is required for excitotoxicity induced neuronal degeneration transcription profiling by array Mus musculus 10 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50245/E-GEOD-50245.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50245/E-GEOD-50245.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50245/ E-GEOD-50240 Red blood cells from mice on high fat diet induce macrophage activation during phagocytosis transcription profiling by array Mus musculus 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50240/E-GEOD-50240.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50240/E-GEOD-50240.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50240/ E-GEOD-50227 Glioma stem cell treatment with MELK-signaling inhibitors transcription profiling by array Homo sapiens 6 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50227/E-GEOD-50227.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50227/ E-GEOD-50224 MIcroRNA expression profiling of chemotherapy resistant esophageal adeno- and squamous cell carcinoma cell lines transcription profiling by array Homo sapiens 36 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50224/E-GEOD-50224.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50224/E-GEOD-50224.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50224/ E-GEOD-50223 Allergen challenged CD4+ cells from allergic patients and healthy controls transcription profiling by array Homo sapiens 84 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50223/E-GEOD-50223.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50223/ E-GEOD-50221 Cardiac mesenchymal progenitors from postmortem cardiac tissue retained cellular characterization transcription profiling by array Mus musculus 7 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50221/E-GEOD-50221.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50221/E-GEOD-50221.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50221/ E-GEOD-50212 Propagation of Human corneal Endothelial Cells ? A Novel Dual Media Approach transcription profiling by array Homo sapiens 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50212/E-GEOD-50212.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50212/ E-GEOD-50205 Identification of the transcriptional profile of the hyphal tip of Neurospora crassa RNA-seq of coding RNA Neurospora crassa 1 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50205/E-GEOD-50205.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50205/ E-GEOD-50112 Effect of Alloantibody and Complement on Endothelial Cells transcription profiling by array Homo sapiens 36 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50112/E-GEOD-50112.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50112/ E-GEOD-48420 Lost miRNA surveillance of NOTCH, IGFR pathway-road to sarcomagenesis other, transcription profiling by array Homo sapiens 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48420/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48420/ E-GEOD-48418 Lost miRNA surveillance of NOTCH, IGFR pathway-road to sarcomagenesis [Illumina] transcription profiling by array Homo sapiens 6 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48418/E-GEOD-48418.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48418/ E-GEOD-48396 Lost miRNA surveillance of NOTCH, IGFR pathway-road to sarcomagenesis [Exiqon] other Homo sapiens 6 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48396/E-GEOD-48396.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48396/ E-GEOD-47933 Impact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol RNA-seq of coding RNA Homo sapiens 16 2013-08-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47933/ E-GEOD-47072 Thermotoga maritima transcription during exponential and stationary phase growth on 1 and 5 g/l yeast extract transcription profiling by array Thermotoga maritima 4 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47072/E-GEOD-47072.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47072/E-GEOD-47072.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47072/ E-GEOD-46546 Expression data from FACS purified nociceptor neurons from peripheral sensory ganglia transcription profiling by array Mus musculus 10 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46546/E-GEOD-46546.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46546/E-GEOD-46546.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46546/ E-GEOD-46210 Clonal expansion analysis of transposon insertions by high-throughput sequencing identifies candidate cancer genes in a PiggyBac mutagenesis screen DNA-seq Mus musculus 34 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46210/E-GEOD-46210.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46210/ E-GEOD-46104 Global transcriptome profiling of Oct4/Klf4/Sox2 (3Factor, 3F) + IL6 iPS clones derived from mouse embryonic fibroblasts. RNA-seq of coding RNA Mus musculus 8 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46104/E-GEOD-46104.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46104/ E-GEOD-44939 Genome-wide maps of virus-induced transcription factors and transcription machinery at steady state and after virus infection ChIP-seq Homo sapiens 13 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44939/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44939/ E-GEOD-40742 Histone Methylation Regulates Nephron Progenitor Cell Fate in Mice ChIP-seq Mus musculus 6 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40742/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40742/ E-GEOD-40430 Transcriptional analysis of the response of Caldicellulosiruptor saccharolyticus to different H2 partial pressures transcription profiling by array Caldicellulosiruptor saccharolyticus 1 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40430/E-GEOD-40430.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40430/E-GEOD-40430.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40430/ E-GEOD-28587 YG001: A Usp7-Tip60 pathway regulates early adipogenesis transcription profiling by array Mus musculus 12 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28587/E-GEOD-28587.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28587/E-GEOD-28587.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28587/ E-GEOD-24011 Chromatin function of IkBa: ChIP-on-chip of IkBa ChIP-chip by tiling array Mus musculus 3 2013-08-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24011/E-GEOD-24011.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24011/E-GEOD-24011.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24011/ E-MTAB-1777 Transcription profiling by array of Arabidopsis Col-0 plants and myc2myc3myc4 triple mutant plants to study the transcription target of MYC2/MYC3/MYC4 and their role in controlloing jasmonate-related defense responses transcription profiling by array Arabidopsis thaliana 3 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1777/E-MTAB-1777.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1777/E-MTAB-1777.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1777/ E-MTAB-1689 Transcription profiling by array of Caenorhabditis elegans samples treated with UVB irradiation or mock treated to derive gene expression response to UVB induced DNA damage transcription profiling by array Caenorhabditis elegans 6 2013-08-27 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1689/E-MTAB-1689.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1689/ E-GEOD-50183 Effect of adiponectin deficiency on pulmonary responses to subacute ozone exposure in mice transcription profiling by array Mus musculus 16 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50183/E-GEOD-50183.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50183/E-GEOD-50183.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50183/ E-GEOD-50179 miRNA high throughput sequence analysis of AKXD recombinant inbred panel mammary tumors RNA-seq of non coding RNA Mus musculus 18 2013-08-27 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50179/ E-GEOD-50117 Identification of a gene expression signature in colorectal adenocarcinoma in comparison with normal mucosa transcription profiling by array Homo sapiens 18 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50117/E-GEOD-50117.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50117/E-GEOD-50117.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50117/ E-GEOD-50115 Identification of a gene expression signature in colorectal adenocarcinoma in comparison with colorectal adenoma transcription profiling by array Homo sapiens 46 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50115/E-GEOD-50115.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50115/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50115/ E-GEOD-50114 Identification of a gene expression signature in colorectal adenoma in comparison with normal mucosa transcription profiling by array Homo sapiens 46 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50114/E-GEOD-50114.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50114/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50114/ E-GEOD-49956 Acidification alters the composition of ammonia oxidizing microbial assemblages in marine mesocosms other environmental samples, synthetic construct 24 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49956/E-GEOD-49956.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49956/E-GEOD-49956.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49956/ E-GEOD-49044 DNA unmethylome profiling by covalent capture of CpG sites (microarray) other, methylation profiling by array Homo sapiens 90 2013-08-27 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49044/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49044/ E-GEOD-48994 DNA unmethylome profiling by covalent capture of CpG sites other Homo sapiens 1 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48994/E-GEOD-48994.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48994/ E-GEOD-47780 Drosophila midgut regional gene expression RNA-seq of coding RNA Drosophila melanogaster 30 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47780/E-GEOD-47780.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47780/ E-GEOD-44840 Investigating the changes in gene expression of liver tissue exposed to phenanthrene over 72hr transcription profiling by array Pimephales promelas 28 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44840/E-GEOD-44840.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44840/E-GEOD-44840.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44840/ E-GEOD-44839 The effects of different concentrations of phenanthrene on FHM liver transcription profiling by array Pimephales promelas 20 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44839/E-GEOD-44839.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44839/E-GEOD-44839.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44839/ E-GEOD-44741 Genome-Wide Binding of Ehf in mouse corneal epithelium ChIP-seq Mus musculus 2 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44741/E-GEOD-44741.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44741/ E-GEOD-43505 Unilateral once daily milking locally induces differential gene expression in both mammary tissue and milk epithelial cells revealing mammary remodeling transcription profiling by array Bos taurus 10 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43505/E-GEOD-43505.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43505/E-GEOD-43505.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43505/ E-GEOD-43424 Genome-wide DNA methylation patterns and its correlation with gene expression profile in Nasonia vitripennis methylation profiling by high throughput sequencing, RNA-seq of coding RNA Nasonia vitripennis 3 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43424/E-GEOD-43424.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43424/ E-GEOD-43423 Base-pair level resolution of the Nasonia vitripennis methylome methylation profiling by high throughput sequencing Nasonia vitripennis 2 2013-08-27 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43423/ E-GEOD-43422 Profiling of expression level in adult female Nasonia vitripennis RNA-seq of coding RNA Nasonia vitripennis 1 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43422/E-GEOD-43422.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43422/ E-GEOD-43313 Effects of supernatants of USP2 knockdown HL-60 cells and mock transfected HL60 cells on differentiated 3T3-L1 cells transcription profiling by array Mus musculus 8 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43313/E-GEOD-43313.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43313/E-GEOD-43313.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43313/ E-GEOD-42888 Progesterone Receptor Targetome in the Mammary Gland ChIP-seq, transcription profiling by array Mus musculus 16 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42888/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42888/E-GEOD-42888.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42888/ E-GEOD-42887 Progesterone receptor ChIP-seq within the mouse mammary gland ChIP-seq Mus musculus 4 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42887/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42887/ E-GEOD-42858 Progesterone receptor-dependent gene signatures in the mouse mammary gland after acute progesterone treatment transcription profiling by array Mus musculus 12 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42858/E-GEOD-42858.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42858/E-GEOD-42858.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42858/ E-GEOD-42218 Mutation of the RNA polymerase ?-subunit gene promotes hetero-to-homo conversion of ß-lactam resistance of methicillin-resistant Staphylococcus aureus transcription profiling by array Staphylococcus aureus 2 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42218/E-GEOD-42218.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42218/E-GEOD-42218.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42218/ E-GEOD-38337 Short-term, high fat-feeding-induced changes in white adipose tissue gene expression are highly predictive for long-term changes transcription profiling by array Mus musculus 40 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38337/E-GEOD-38337.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38337/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38337/ E-GEOD-36131 Breast cancer cell lines treated with EZH2 inhibitor compounds transcription profiling by array Homo sapiens 16 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36131/E-GEOD-36131.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36131/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36131/ E-GEOD-20476 Effects of gene scilencing of USP2 on expression profiles of HL60 cells transcription profiling by array Homo sapiens 24 2013-08-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20476/E-GEOD-20476.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20476/E-GEOD-20476.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-20476/ E-ERAD-182 RNA-Seq of Rat olfactory RNA-seq of coding RNA Rattus norvegicus 12 2013-08-27 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-182/ E-MTAB-1788 Human skeletal muscle gene expression meta analysis transcription profiling by array Homo sapiens 1655 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1788/E-MTAB-1788.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1788/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1788/ E-GEOD-50175 Expression data from human Th1 and Th1Th17 cells transcription profiling by array Homo sapiens 8 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50175/E-GEOD-50175.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50175/E-GEOD-50175.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50175/ E-GEOD-50046 Whole genome profiling of liver sinusoidal endothelial cells (LSEC) before and after hepatectomy transcription profiling by array Mus musculus 8 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50046/E-GEOD-50046.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50046/ E-GEOD-49670 Expression data from laser capture microdissected human atherosclerotic plaque, rich or void of plasmacytoid dendritic cells transcription profiling by array Homo sapiens 11 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49670/E-GEOD-49670.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49670/E-GEOD-49670.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49670/ E-GEOD-48462 MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951 methylation profiling by array Homo sapiens 117 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48462/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48462/ E-GEOD-48461 MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas; A report from EORTC study 26951 methylation profiling by array Homo sapiens 59 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48461/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48461/ E-GEOD-48460 MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951 [27K] methylation profiling by array Homo sapiens 58 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48460/E-GEOD-48460.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48460/ E-GEOD-48314 CHD5 is required for neurogenesis and has a dual role in facilitating gene expression and Polycomb gene repression ChIP-seq Homo sapiens 4 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48314/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48314/ E-GEOD-47425 Lung transcript expression profile after Gata5 gene deletion transcription profiling by array Mus musculus 7 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47425/E-GEOD-47425.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47425/E-GEOD-47425.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47425/ E-GEOD-47354 Genome-wide expression profiling of Hic-5 and TGFB in WPMY fibroblasts transcription profiling by array Homo sapiens 20 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47354/E-GEOD-47354.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47354/E-GEOD-47354.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47354/ E-GEOD-47203 Genome-wide expression profiling of Hic-5 knockdown in PshTert-AR human myofibroblasts transcription profiling by array Homo sapiens 12 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47203/E-GEOD-47203.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47203/E-GEOD-47203.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47203/ E-GEOD-45414 Low-dose actinomycin D preferentially disrupts EWS-FLI1DNA binding. transcription profiling by array Homo sapiens 12 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45414/E-GEOD-45414.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45414/E-GEOD-45414.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45414/ E-GEOD-44778 Lhx2-regulated genes in hematopoietic stem cell (HSC)-like cells differentiated from mouse embryonic stem (ES) cells transcription profiling by array Mus musculus 1 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44778/E-GEOD-44778.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44778/E-GEOD-44778.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44778/ E-GEOD-41061 Methylation Changes in Soybean Mid-Maturation Seed Parts methylation profiling by high throughput sequencing Glycine max 3 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41061/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41061/ E-GEOD-40978 Long non-coding RNAs act as novel mediators of Innate Immunity RNA-seq of coding RNA Mus musculus 4 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40978/E-GEOD-40978.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40978/ E-GEOD-40677 Gene expression analysis in mice with heart muscle-specific repression of CELF activity (MHC-CELFdelta) transcription profiling by array Mus musculus 12 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40677/E-GEOD-40677.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40677/E-GEOD-40677.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40677/ E-GEOD-39405 The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner RNA-seq of coding RNA Arabidopsis thaliana 4 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39405/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39405/ E-GEOD-37013 Genome-wide analysis of Ischaemia-Reperfusion damage in human bowel transcription profiling by array Homo sapiens 28 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37013/E-GEOD-37013.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37013/ E-GEOD-32119 Host and pathogen interaction: time course transcription profiling by array Candida albicans, Danio rerio 54 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32119/E-GEOD-32119.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32119/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32119/ E-GEOD-32118 Host and pathogen interaction: time course [zebrafish] transcription profiling by array Danio rerio 27 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32118/E-GEOD-32118.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32118/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32118/ E-GEOD-32117 Host and pathogen interaction: time course [C. albicans] transcription profiling by array Candida albicans 27 2013-08-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32117/E-GEOD-32117.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32117/E-GEOD-32117.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32117/ E-MTAB-1117 Tissue-specific ChIP-seq for RNA pol II and H2A.v in Drosophila melanogaster ChIP-seq, RNA-seq of coding RNA Drosophila melanogaster 34 2013-08-25 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1117/ E-GEOD-50161 Expression data from human brain tumors and human normal brain transcription profiling by array Homo sapiens 130 2013-08-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50161/E-GEOD-50161.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50161/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50161/ E-GEOD-42258 The transcriptomic signature of RacA activation and inactivation provides new insights into the morphogenetic network of Aspergillus niger transcription profiling by array Aspergillus niger 14 2013-08-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42258/E-GEOD-42258.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42258/E-GEOD-42258.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42258/ E-GEOD-36569 SCFA receptor response transcription profiling by array Mus musculus 6 2013-08-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36569/E-GEOD-36569.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36569/E-GEOD-36569.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36569/ E-MTAB-1835 ChIP-seq of Tribolium castaneum gene expression response to a specific expression of CpBV-H4 by a transient expression technique ChIP-seq Tribolium castaneum 2 2013-08-24 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1835/ E-GEOD-50164 Hydrodynamic conditions shape ammonia-oxidizer communities in the central Baltic Sea water column other aquatic metagenome, artificial sequences 31 2013-08-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50164/E-GEOD-50164.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50164/E-GEOD-50164.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50164/ E-GEOD-50163 Bacteria are the dominant ammonia oxidizers in coastal sediments of the Western English Channel other , artificial sequences, marine sediment metagenome 11 2013-08-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50163/E-GEOD-50163.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50163/E-GEOD-50163.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50163/ E-GEOD-49066 Microarray analysis of CD14+ CD163low cells in human intestinal lamina propria transcription profiling by array Homo sapiens 4 2013-08-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49066/E-GEOD-49066.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49066/E-GEOD-49066.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49066/ E-GEOD-44356 Expression data from wild-type and HMGN1 knockout mice injected with N-nitrosodiethylamine transcription profiling by array Mus musculus 18 2013-08-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44356/E-GEOD-44356.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44356/E-GEOD-44356.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44356/ E-GEOD-40355 Bladder cancer: analysis of miRNA-mRNA interactions transcription profiling by array Homo sapiens 48 2013-08-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40355/E-GEOD-40355.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40355/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40355/ E-GEOD-33227 Genome-wide maps of chromatin state in C2C12 myoblast cells and myotubes. ChIP-seq Mus musculus 12 2013-08-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33227/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33227/ E-MTAB-1758 Transcription profiling by array of miR-210 transgenic (in vivo), mimic-transfected (in vitro) and miR-210 knockout activated mouse B-cells to assess the effect of miR-210 overexpression on the B-cell transcriptome transcription profiling by array Mus musculus 18 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1758/E-MTAB-1758.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1758/E-MTAB-1758.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1758/ E-MEXP-3899 Transcription profiling by array of C. elegans dauer stage larve with or without extreme dessication stress to study the nematode's molecular strategies in surviving extreme desiccation transcription profiling by array Caenorhabditis elegans 8 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3899/E-MEXP-3899.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3899/E-MEXP-3899.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3899/ E-GEOD-50133 Expression data from stable clones of BE(2)M17 cell line expressing miR-142 or miR-null transcription profiling by array Homo sapiens 6 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50133/E-GEOD-50133.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50133/E-GEOD-50133.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50133/ E-GEOD-50125 S. paradoxus wt strains: glucose vs. xylulose growth transcription profiling by array Saccharomyces paradoxus 12 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50125/E-GEOD-50125.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50125/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50125/ E-GEOD-50124 S. cerevisiae wt strains: glucose vs. xylulose growth transcription profiling by array Saccharomyces cerevisiae 36 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50124/E-GEOD-50124.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50124/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50124/ E-GEOD-50116 Expression analysis of African Green Monkeys after treatment with a miR-33a/b-targeting LNA-antimiR transcription profiling by array Chlorocebus aethiops 10 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50116/E-GEOD-50116.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50116/E-GEOD-50116.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50116/ E-GEOD-50086 The global gene expression pattern by YDR374C deletion transcription profiling by array Saccharomyces cerevisiae 2 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50086/E-GEOD-50086.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50086/E-GEOD-50086.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50086/ E-GEOD-50084 Expression data from blood and biopsies of Donor-Specific Antibody positive patients transcription profiling by array Homo sapiens 115 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50084/E-GEOD-50084.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50084/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50084/ E-GEOD-50083 Microarray analysis of monoclonal K562 lines transfected with pEF1a or pEF1a-Pu.2 transcription profiling by array Homo sapiens 6 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50083/E-GEOD-50083.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50083/E-GEOD-50083.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50083/ E-GEOD-50082 Myeloid derived suppressor cells enhance stemness of cancer cells by inducing miRNA101 and suppressing the corepressor CtBP2 transcription profiling by RT-PCR Homo sapiens 5 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50082/E-GEOD-50082.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50082/ E-GEOD-50040 Cross-talk between E. coli strains and a human colorectal adenocarcinoma-derived cell line transcription profiling by array Homo sapiens 18 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50040/E-GEOD-50040.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50040/E-GEOD-50040.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50040/ E-GEOD-48620 Long-term growth under elevated CO2 differentially suppresses biotic stress genes in non-acclimated versus cold-acclimated winter wheat transcription profiling by array Triticum aestivum 12 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48620/E-GEOD-48620.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48620/E-GEOD-48620.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48620/ E-GEOD-48284 Gene expression of SKOV3 cells after no treatment or treatment with 50 microM peracetylated GlcNAc or peracetylated 4-deoxy-GlcNAc for three days transcription profiling by array Homo sapiens 9 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48284/E-GEOD-48284.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48284/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48284/ E-GEOD-47762 H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction [NimbleGen array] ChIP-chip by tiling array Mus musculus 2 2013-08-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47762/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47762/ E-GEOD-47761 H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction (II) [ChIP-Seq] ChIP-seq Mus musculus 4 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47761/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47761/ E-GEOD-47716 H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction [Agilent array] transcription profiling by array Mus musculus 6 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47716/E-GEOD-47716.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47716/E-GEOD-47716.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47716/ E-GEOD-47577 Regulation of endometrial bleeding by uNK cells transcription profiling by array Homo sapiens 39 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47577/E-GEOD-47577.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47577/E-GEOD-47577.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47577/ E-GEOD-47386 Gene expression study in Neuroblastoma after BET inhibition transcription profiling by array Homo sapiens 18 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47386/E-GEOD-47386.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47386/ E-GEOD-43103 H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction ChIP-seq, ChIP-chip by tiling array, transcription profiling by array Mus musculus 33 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43103/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43103/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43103/ E-GEOD-43102 H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction (I) [ChIP-Seq] ChIP-seq Mus musculus 4 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43102/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43102/ E-GEOD-43101 Gain and loss of H4K16 acetylation during ES cell differentiation [Agilent arrays] transcription profiling by array Mus musculus 12 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43101/E-GEOD-43101.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43101/E-GEOD-43101.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43101/ E-GEOD-43100 Profile of H4K16 acetylation in undifferentiated ES cells [Illumina BeadArray data] transcription profiling by array Mus musculus 3 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43100/E-GEOD-43100.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43100/ E-GEOD-43099 Gain and loss of H4K16 acetylation during ES cell differentiation [NimbleGen ChIP-chip] ChIP-chip by tiling array Mus musculus 2 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43099/E-GEOD-43099.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43099/E-GEOD-43099.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43099/ E-GEOD-40325 microRNA expression profiles in bone marrow fractions from gastric cancer patients transcription profiling by array Homo sapiens 16 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40325/E-GEOD-40325.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40325/E-GEOD-40325.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40325/ E-GEOD-30345 Bacterial Adaptation Through Loss of Function transcription profiling by array Escherichia coli str. K-12 substr. MG1655 16 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30345/E-GEOD-30345.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30345/E-GEOD-30345.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30345/ E-GEOD-23794 Response of Rhodospirillum rubrum S1H to three pharmaceuticals transcription profiling by array Rhodospirillum rubrum 9 2013-08-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23794/E-GEOD-23794.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23794/E-GEOD-23794.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23794/ E-MTAB-1412 Transcription profiling by tiling array of A. thaliana leaves to investigate transcriptome changes of PcG protein mutants clf and lhp1 transcription profiling by tiling array Arabidopsis thaliana 11 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1412/E-MTAB-1412.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1412/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1412/ E-GEOD-50109 Targeted inhibition of three human breast cancer cell lines as model systems of ERBB2-positive breast cancer proteomic profiling by array Homo sapiens 17 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50109/E-GEOD-50109.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50109/E-GEOD-50109.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50109/ E-GEOD-50100 Unlock the mystery of the hard-to-sequence phage genome: discovering a novel mechanism of bacterial immunity methylation profiling by high throughput sequencing Pseudomonas phage PaP1 1 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50100/E-GEOD-50100.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50100/ E-GEOD-50091 Expression data from late-luteal bovine endometrium transcription profiling by array Bos taurus 16 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50091/E-GEOD-50091.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50091/E-GEOD-50091.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50091/ E-GEOD-50075 Protein Microarray Analysis of Antibody Responses of Experimentally Infected Dogs to Borrelia burgdorferi Antigens OspC proteomic profiling by array Canis lupus familiaris 38 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50075/E-GEOD-50075.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50075/ E-GEOD-50074 Protein Microarray Analysis of Antibody Responses of Experimentally Infected Dogs to Borrelia burgdorferi Antigens proteomic profiling by array Canis lupus familiaris 39 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50074/E-GEOD-50074.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50074/ E-GEOD-50072 Gene expression profiling of KMS11 parental (PAR), TKO and 8 reconstituted lines transcription profiling by array Homo sapiens 30 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50072/E-GEOD-50072.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50072/E-GEOD-50072.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50072/ E-GEOD-50070 Expression data from Serinus canaria HVC, RA and Entopallium transcription profiling by array Serinus canaria 18 2013-08-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50070/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50070/ E-GEOD-50068 MiR-21 is targeted by STAT5 but dispensable for mammary gland development RNA-seq of coding RNA Mus musculus 4 2013-08-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50068/ E-GEOD-50061 Gene expression in human breast cancer cell lines regulated by HIC1 gene transcription profiling by array Homo sapiens 4 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50061/E-GEOD-50061.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50061/E-GEOD-50061.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50061/ E-GEOD-50048 shRNA Screening Identifies JMJD1C as being required for Leukemia Maintenance transcription profiling by array Homo sapiens 6 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50048/E-GEOD-50048.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50048/E-GEOD-50048.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50048/ E-GEOD-49341 Redistribution of the Lamin B1 genomic binding profile affects spatial rearrangement of heterochromatic domains and gene expression during senescence ChIP-seq Homo sapiens 18 2013-08-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49341/ E-GEOD-48400 Dynamic expression profiling of type I and type III interferon-stimulated hepatocytes. transcription profiling by array Homo sapiens 73 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48400/E-GEOD-48400.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48400/ E-GEOD-48174 Long noncoding RNAs are dysregulated in malignant pleural mesothelioma transcription profiling by array Homo sapiens 10 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48174/E-GEOD-48174.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48174/E-GEOD-48174.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48174/ E-GEOD-46427 Telomeric repeats facilitate CENP-A incorporation via telomere binding proteins ChIP-chip by tiling array Schizosaccharomyces pombe 2 2013-08-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46427/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46427/ E-GEOD-45776 Transcriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures transcription profiling by array , Lactobacillus delbrueckii subsp. bulgaricus, Saccharomyces cerevisiae 6 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45776/E-GEOD-45776.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45776/E-GEOD-45776.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45776/ E-GEOD-45376 RNA-Seq characterization of spinal cord injury transcriptome in acute/subacute phases: a resource for understanding the pathology at the systems level RNA-seq of coding RNA Mus musculus 8 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45376/E-GEOD-45376.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45376/ E-GEOD-42715 Expression data from open bariatric surgery patients - various adipose samples transcription profiling by array Homo sapiens 9 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42715/E-GEOD-42715.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42715/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42715/ E-GEOD-39378 Hepatic transcriptome of rats treated with vehicle or fipronil (3 mg/kg/d per os for 14 days) transcription profiling by array Rattus norvegicus 15 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39378/E-GEOD-39378.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39378/E-GEOD-39378.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39378/ E-GEOD-36267 Small RNA-seq and gene expression analysis reveal a miRNA profile of cancer-susceptibility in ATM deficient human mammary epithelial cells transcription profiling by array Homo sapiens 12 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36267/E-GEOD-36267.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36267/E-GEOD-36267.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36267/ E-GEOD-36266 Small RNA-seq and gene expression analysis reveal a miRNA profile of cancer-susceptibility in ATM deficient human mammary epithelial cells (Small RNA-Seq) RNA-seq of non coding RNA Homo sapiens 6 2013-08-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36266/ E-GEOD-36082 Small RNA-seq and gene expression analysis reveal a miRNA profile of cancer-susceptibility in ATM deficient human mammary epithelial cells (mRNA) transcription profiling by array Homo sapiens 6 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36082/E-GEOD-36082.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36082/E-GEOD-36082.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36082/ E-GEOD-35535 TIMP1 overexpression mediates resistance of MCF-7 human breast cancer cells to fulvestrant and down-regulates progesterone receptor expression transcription profiling by array Homo sapiens 10 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35535/E-GEOD-35535.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35535/E-GEOD-35535.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35535/ E-GEOD-32865 Transcriptome analysis of Bacillus subtilis in response to air plasma treatment transcription profiling by array Bacillus subtilis 6 2013-08-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32865/E-GEOD-32865.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32865/E-GEOD-32865.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32865/ E-MTAB-1333 Transcription profiling by array of Caenorhabditis elegans DGCR8/pash-1 conditional mutant transcription profiling by array Caenorhabditis elegans 24 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1333/E-MTAB-1333.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1333/E-MTAB-1333.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1333/ E-MEXP-3898 Transcriptional profiling by array of Solenopsis invicta (fire ant) queens to identify genes responsible for modification of social rank during pleometrotic colony founding transcription profiling by array Solenopsis invicta 24 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3898/E-MEXP-3898.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3898/E-MEXP-3898.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3898/ E-MEXP-3886 Transcription profiling by array of Solenopsis invicta queens to identify genes associated with individual (haplometrotic) and group (pleometrotic) colony founding behavior transcription profiling by array Solenopsis invicta 24 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3886/E-MEXP-3886.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3886/E-MEXP-3886.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3886/ E-GEOD-50056 Comparison of gene expression between SDR and HHR mammary glands tissue transcription profiling by array Rattus norvegicus 4 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50056/E-GEOD-50056.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50056/E-GEOD-50056.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50056/ E-GEOD-50051 Cross-platform prediction of gene expression signatures. transcription profiling by array Homo sapiens 83 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50051/E-GEOD-50051.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50051/E-GEOD-50051.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50051/ E-GEOD-50043 Expression analysis of Yersinia intermedia strain ATCC 29909 at 28 C in minimal medium with glucose under aerobic and anaerobic conditions transcription profiling by tiling array Yersinia intermedia ATCC 29909 6 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50043/E-GEOD-50043.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50043/E-GEOD-50043.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50043/ E-GEOD-50039 mRNA microarray analysis on HepG2 cells exposed to Grpahene oxide (GO) and reduced graphene oxide (rGO) Nanomaterials transcription profiling by array Homo sapiens 3 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50039/E-GEOD-50039.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50039/E-GEOD-50039.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50039/ E-GEOD-50028 Gene expression data of untreated and RA-treated wild type and RXR?-deficient mice liver transcription profiling by array Mus musculus 12 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50028/E-GEOD-50028.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50028/E-GEOD-50028.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50028/ E-GEOD-50020 Sequences tags expressed in ovules of Arabidopsis thaliana using Massively Parallel Signature Sequencing (MPSS) transcription profiling by MPSS Arabidopsis thaliana 2 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50020/E-GEOD-50020.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50020/ E-GEOD-50017 p/CIP gene regulation in mouse embryonic stem cells transcription profiling by array Mus musculus 6 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50017/E-GEOD-50017.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50017/E-GEOD-50017.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50017/ E-GEOD-50013 Applied Biosystems Human TaqMan Low Density Array (TLDA) in plasma samples from HCC cases and controls transcription profiling by RT-PCR Homo sapiens 40 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50013/E-GEOD-50013.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50013/ E-GEOD-50012 Comparison of cellular and transcriptional responses to 1,25-dihydroxyvitamin D3 and glucocorticoids in peripheral blood mononuclear cells transcription profiling by array Homo sapiens 72 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50012/E-GEOD-50012.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50012/ E-GEOD-49615 Head and neck paragangliomas transcription profiling by array, genotyping by array, comparative genomic hybridization by array Homo sapiens 72 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49615/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49615/ E-GEOD-49614 High-density genome-wide copy number variation (CNV) in human head and neck paragangliomas. genotyping by array, comparative genomic hybridization by array Homo sapiens 51 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49614/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49614/ E-GEOD-49568 Signal Transducer and Activator of Transcription 3 limits Epstein-Barr virus lytic-activation in B lymphocytes. transcription profiling by array Homo sapiens 2 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49568/E-GEOD-49568.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49568/E-GEOD-49568.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49568/ E-GEOD-49190 Genome-wide analysis of the miR profile in human head and neck paraganglioma vs. Jacobson's (tympanic) nerve and SH-SY5Y neuroblastoma cells transcription profiling by array Homo sapiens 21 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49190/E-GEOD-49190.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49190/ E-GEOD-48125 Neonatal antibotic prophylaxis modulates intestinal immunity and prevents necrotizing enterocolitis in preterm neonates transcription profiling by array Sus scrofa 16 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48125/E-GEOD-48125.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48125/E-GEOD-48125.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48125/ E-GEOD-48100 Effect of maternal exposure to dioxin on the pituitary and hypothalamic expression of genes in PND70 male pups transcription profiling by array Rattus norvegicus 12 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48100/E-GEOD-48100.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48100/ E-GEOD-48007 Targeted disruption of Hotair leads to homeotic transformation and de-repression of imprinted genes ChIP-seq, transcription profiling by array, RNA-seq of coding RNA Mus musculus 18 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48007/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48007/E-GEOD-48007.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48007/ E-GEOD-48005 Targeted disruption of Hotair leads to homeotic transformation and de-repression of imprinted genes [RNA-Seq, ChIP-Seq] ChIP-seq, RNA-seq of coding RNA Mus musculus 12 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48005/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48005/ E-GEOD-48004 Targeted disruption of Hotair leads to homeotic transformation and de-repression of imprinted genes [Microarray Analysis] transcription profiling by array Mus musculus 6 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48004/E-GEOD-48004.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48004/E-GEOD-48004.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48004/ E-GEOD-47623 Large scale variation in copy number in chicken breeds comparative genomic hybridization by array Gallus gallus 62 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47623/E-GEOD-47623.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47623/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47623/ E-GEOD-45818 Differential Gene Regulation during murine in vivo heart ischemia comparing wildtype and Per2 deficient mice transcription profiling by array Mus musculus 24 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45818/E-GEOD-45818.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45818/E-GEOD-45818.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45818/ E-GEOD-43408 Quantitative Different Analysis of antimicrobial peptide LL37 expressed in E.coli Top 10 under aerobic and anaerobic condition. RNA-seq of coding RNA Escherichia coli 4 2013-08-21 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43408/ E-GEOD-41779 Current injection and distal wound response in Arabidopsis thaliana transcription profiling by array Arabidopsis thaliana 12 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41779/E-GEOD-41779.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41779/E-GEOD-41779.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41779/ E-GEOD-40811 Transcriptional profiling of Escherichia coli after addition of CORM-3 and iCORM-3 to aerobically and anaerobically growing cells transcription profiling by array Escherichia coli 96 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40811/E-GEOD-40811.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40811/E-GEOD-40811.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40811/ E-GEOD-40269 The cistrome of NKX3.1 in LNCaP prostate cancer cells ChIP-seq Homo sapiens 2 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40269/E-GEOD-40269.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40269/ E-GEOD-40242 Activating of jasmonic acid pathway through depletion of rice hydroperoxide lyase OsHPL3 revealed a crosstalk between HPL- and AOS-branch oxylipin pathways in rice transcription profiling by array Oryza sativa Japonica Group 6 2013-08-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40242/E-GEOD-40242.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40242/E-GEOD-40242.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40242/ E-MTAB-1817 Transcription profiling by array of human erythroleukemic (HEL) cell line treated with TG101209, an inhibitor of Janus kinase 2 (JAK2) and the BET inhibitor, GSK1210151A (I-BET151) transcription profiling by array Homo sapiens 12 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1817/E-MTAB-1817.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1817/E-MTAB-1817.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1817/ E-GEOD-50038 Immunopathogenesis of renal inflammation during the progression, remission and relapse of renal disease in the NZB/W murine lupus model transcription profiling by array Mus musculus 57 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50038/E-GEOD-50038.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50038/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50038/ E-GEOD-50009 Wnt signaling pathway gene expression profile in SW480 cells with/without hiNOS overexpression transcription profiling by array Homo sapiens 2 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50009/E-GEOD-50009.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50009/ E-GEOD-50008 The effect of cell subset isolation method on gene expression in leukocytes. transcription profiling by array Homo sapiens 50 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50008/E-GEOD-50008.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50008/ E-GEOD-50002 Effect of Twist-box mutation on gene expression induced by Twist1 overexpression transcription profiling by array Mus musculus 15 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50002/E-GEOD-50002.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50002/E-GEOD-50002.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50002/ E-GEOD-50001 Expression data from Balb/C mice spleen tissues transcription profiling by array Mus musculus 6 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50001/E-GEOD-50001.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-50001/E-GEOD-50001.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50001/ E-GEOD-49977 Mapping of Rec12 oligonucleotides in Schizosaccharomyces pombe other Schizosaccharomyces pombe 3 2013-08-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49977/ E-GEOD-49970 Expression Data from 12 week old APCmin/+ and littermate matched Wildtype B6 mouse Terminal Ileum (TI) transcription profiling by array Mus musculus 10 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49970/E-GEOD-49970.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49970/E-GEOD-49970.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49970/ E-GEOD-49964 Seeking genes responsible for developmental origins of health and disease from the fetal mouse liver in food restricted model transcription profiling by array Mus musculus 8 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49964/E-GEOD-49964.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49964/E-GEOD-49964.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49964/ E-GEOD-49963 Comparative Analysis of Seed Transcriptomes of Ambient Ozone-Fumigated Two Different Rice Cultivars transcription profiling by array Oryza sativa 4 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49963/E-GEOD-49963.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49963/E-GEOD-49963.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49963/ E-GEOD-49712 Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data unknown experiment type, RNA-seq of coding RNA Homo sapiens 10 2013-08-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49712/ E-GEOD-49536 Effect of ArhGAP30 on the gene expression profile of colorectal cancer cells transcription profiling by array Homo sapiens 6 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49536/E-GEOD-49536.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49536/E-GEOD-49536.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49536/ E-GEOD-49221 Epigenetic Basis of Regeneration: Analysis of Genomic DNA Methylation Profiles in the MRL/MpJ mouse methylation profiling by array Mus musculus 6 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49221/E-GEOD-49221.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49221/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49221/ E-GEOD-48993 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (RNA-Seq) RNA-seq of coding RNA Bacteria, Bacteroides cellulosilyticus 116 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48993/E-GEOD-48993.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48993/ E-GEOD-48537 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome other, transcription profiling by array, RNA-seq of coding RNA Bacteria, Bacteroides caccae ATCC 43185, Bacteroides cellulosilyticus, Bacteroides ovatus ATCC 8483, Bacteroides sp. WH2, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174 895 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48537/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48537/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48537/ E-GEOD-48532 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (GeneChip) transcription profiling by array Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides sp. WH2, Bacteroides thetaiotaomicron VPI-5482, Bacteroides uniformis ATCC 8492, Bacteroides vulgatus ATCC 8482, Clostridium scindens ATCC 35704, Clostridium spiroforme DSM 1552, Collinsella aerofaciens ATCC 25986, Dorea longicatena DSM 13814, Parabacteroides distasonis ATCC 8503, Ruminococcus obeum ATCC 29174 168 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48532/E-GEOD-48532.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48532/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48532/ E-GEOD-48369 Expression data of sleeping, waking, and sleep deprived in adult heterozygous Cnp ? eGFP-L10a mice transcription profiling by array Mus musculus 36 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48369/E-GEOD-48369.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48369/E-GEOD-48369.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48369/ E-GEOD-48367 Knockdown of human TCF4 affects multiple signaling pathways involved in cell survival, epithelial-to-mesenchymal transition and neuronal differentiation transcription profiling by array Homo sapiens 12 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48367/E-GEOD-48367.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48367/E-GEOD-48367.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48367/ E-GEOD-48216 Modeling precision treatment of breast cancer other, RNA-seq of coding RNA Homo sapiens 131 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48216/E-GEOD-48216.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48216/ E-GEOD-48215 Exome sequencing of a panel of breast cancer cell lines to identify mutations other Homo sapiens 75 2013-08-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48215/ E-GEOD-48213 Transcriptional profiling of a breast cancer cell line panel using RNAseq technology RNA-seq of coding RNA Homo sapiens 56 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48213/E-GEOD-48213.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48213/ E-GEOD-48193 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (COPRO-Seq) other, RNA-seq of coding RNA Bacteria 611 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48193/E-GEOD-48193.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48193/ E-GEOD-48039 Metabolite stress response to butyric acid in Clostridium acetobutylicum ATCC 824 transcription profiling by array Clostridium acetobutylicum ATCC 824 24 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48039/E-GEOD-48039.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48039/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48039/ E-GEOD-48031 Metabolite stress response to butanol in Clostridium acetobutylicum ATCC 824 transcription profiling by array Clostridium acetobutylicum ATCC 824 24 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48031/E-GEOD-48031.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48031/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48031/ E-GEOD-47174 Genome-wide mRNA expression profiles of FACS-enriched rat beta cells freshly isolated from neonatal (postnatal day 2-3) and adult (10 weeks-old) Wistar rats transcription profiling by array Rattus norvegicus 11 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47174/E-GEOD-47174.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47174/E-GEOD-47174.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47174/ E-GEOD-46526 The effects of apigenin on microRNA expression levels transcription profiling by array Homo sapiens 2 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46526/E-GEOD-46526.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46526/E-GEOD-46526.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46526/ E-GEOD-46447 Expression data from miR-205 knockout in Hair Follicle Stem Cells (HFSCs) of mouse skin transcription profiling by array Mus musculus 4 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46447/E-GEOD-46447.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46447/E-GEOD-46447.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46447/ E-GEOD-45152 Interrogating translating RNAs and cell-type specific gene expression using Cre-activated translating ribosome affinity purification other, RNA-seq of coding RNA Mus musculus 53 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45152/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45152/ E-GEOD-44246 Human foreskin fibroblasts (HFFs) infected with type I strains of Toxoplasma gondii transcription profiling by array Homo sapiens, Toxoplasma gondii 11 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44246/E-GEOD-44246.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44246/E-GEOD-44246.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44246/ E-GEOD-44191 Parasite gene expression differences between RH-ERP, RH-JSR and GT1 of Toxoplasma gondii. transcription profiling by array Toxoplasma gondii 3 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44191/E-GEOD-44191.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44191/E-GEOD-44191.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44191/ E-GEOD-44189 Expression data from human foreskin fibroblasts (HFFs) infected with type I strains of Toxoplasma gondii. transcription profiling by array Homo sapiens 8 2013-08-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44189/E-GEOD-44189.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44189/E-GEOD-44189.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44189/ E-MTAB-1825 Transcription profiling by array of livers from Foxa2 -/- knockout mice and wild-type mice to study bile acid-induced cytokine inflammatory signaling in response to the lack of Foxa2 transcription profiling by array Mus musculus 4 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1825/E-MTAB-1825.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1825/E-MTAB-1825.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1825/ E-MARS-21 Transcription profiling by array for comparison of industrial Escherichia coli strains on growth, transcriptome and proteome level in batch cultivations to identify strain specific features (subexperiment BL21 platform) transcription profiling by array Escherichia coli 6 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-MARS-21/E-MARS-21.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MARS-21/E-MARS-21.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MARS-21/ E-MARS-20 Transcription profiling by array for comparison of industrial Escherichia coli strains on growth, transcriptome and proteome level in batch cultivations to identify strain specific features (subexperiment K-12 platform) transcription profiling by array Escherichia coli 12 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-MARS-20/E-MARS-20.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MARS-20/E-MARS-20.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MARS-20/ E-GEOD-49954 T lymphocytes from Chronic HCV-infected patients express unique pro-apoptotic gene signature. transcription profiling by array Homo sapiens 30 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49954/E-GEOD-49954.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49954/E-GEOD-49954.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49954/ E-GEOD-49900 Gene expression in Caco-2 cells co-cultured with bacteria in an apical anaerobic environment transcription profiling by array Homo sapiens 24 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49900/E-GEOD-49900.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49900/E-GEOD-49900.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49900/ E-GEOD-49046 Exon Array Expression Profiling of HCT116 (p53null) cells transfected with wildtype p53 and 6 p53 mutants transcription profiling by array Homo sapiens 8 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49046/E-GEOD-49046.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49046/E-GEOD-49046.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49046/ E-GEOD-46167 Epigenetic changes in Down syndrome leukemogenesis methylation profiling by array Homo sapiens, Mus musculus 43 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46167/E-GEOD-46167.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46167/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46167/ E-GEOD-44799 Distinct Global Shifts in Genomic Binding Profiles of Limb Malformation Associated HOXD13 Mutations ChIP-seq, RNA-seq of coding RNA Gallus gallus 13 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44799/E-GEOD-44799.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44799/ E-GEOD-42496 RNA sequencing of stripe rust infected wheat leaves and isolated haustoria RNA-seq of coding RNA Puccinia striiformis f. sp. tritici 08/21 3 2013-08-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42496/ E-GEOD-41797 Transcriptome Analysis of Rice Root Heterosis by RNA-Seq RNA-seq of coding RNA Oryza sativa 12 2013-08-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41797/ E-GEOD-41470 Expansion of multipotent stem cells from the adult human brain transcription profiling by array Homo sapiens 36 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41470/E-GEOD-41470.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41470/ E-GEOD-41468 Adult human brain stem cells 4 transcription profiling by array Homo sapiens 12 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41468/E-GEOD-41468.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41468/ E-GEOD-41467 Adult human brain stem cells 3 transcription profiling by array Homo sapiens 12 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41467/E-GEOD-41467.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41467/ E-GEOD-41394 Adult human brain stem cells 2 transcription profiling by array Homo sapiens 6 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41394/E-GEOD-41394.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41394/ E-GEOD-41390 Adult human brain stem cells 1 transcription profiling by array Homo sapiens 6 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41390/E-GEOD-41390.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41390/ E-GEOD-40145 SWI/SNF Chromatin-Remodeling Factor Smarcd3/Baf60c Controls Epithelial-Mesenchymal Transition by Inducing Wnt5a Signaling transcription profiling by array Homo sapiens 18 2013-08-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40145/E-GEOD-40145.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40145/ E-MTAB-1772 Transcription profiling by array of OT-I T cells isolated from wild type and Cd27-/- mice transcription profiling by array Mus musculus 10 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1772/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1772/E-MTAB-1772.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1772/ E-MTAB-1553 Transcription profiling by array of human breast cancer cell line SUM149 to compare different culture conditions transcription profiling by array Homo sapiens 6 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1553/E-MTAB-1553.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1553/E-MTAB-1553.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1553/ E-GEOD-48302 SLIT3-ROBO4 Activation Promotes Vascular Network Formation in Human Engineered Tissue and Angiogenesis in Vivo transcription profiling by array Homo sapiens 8 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48302/E-GEOD-48302.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48302/ E-GEOD-47989 Inhibition of p300 impairs Foxp3+ T-regulatory cell function and promotes anti-tumor immunity transcription profiling by array Mus musculus 6 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47989/E-GEOD-47989.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47989/E-GEOD-47989.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47989/ E-GEOD-45743 Addiction of t(8;21) and inv(16) AML to native RUNX1 [Gene Expression data] transcription profiling by array Homo sapiens 12 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45743/E-GEOD-45743.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45743/E-GEOD-45743.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45743/ E-GEOD-45738 Addiction of t(8;21) and inv(16) AML to native RUNX1 [ChIP-Seq data] ChIP-seq Homo sapiens 12 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45738/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45738/ E-GEOD-44638 Global DNA Methylation Remodeling Accompanies CD8 T Cell Effector Function methylation profiling by high throughput sequencing Mus musculus 3 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44638/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44638/ E-GEOD-42380 MicroRNA sequencing and Novel HPV miRNA discovery in HPV cell lines and human tissue samples RNA-seq of non coding RNA Homo sapiens 12 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42380/E-GEOD-42380.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42380/ E-GEOD-41744 Ficolin-1 is upregulated in leukocytes and glomeruli from microscopic polyangiitis patients transcription profiling by array Homo sapiens 12 2013-08-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41744/E-GEOD-41744.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41744/E-GEOD-41744.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41744/ E-GEOD-33107 SICKLE is a novel factor involved in miRNA biogenesis and is important for development and stress tolerance of Arabidopsis transcription profiling by array, transcription profiling by tiling array Arabidopsis thaliana 4 2013-08-18 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33107/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33107/ E-GEOD-49947 Early innate immunity determines outcome of Mycobacterium tuberculosis pulmonary infection in rabbits transcription profiling by array Oryctolagus cuniculus 8 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49947/E-GEOD-49947.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49947/E-GEOD-49947.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49947/ E-GEOD-49945 Genome-wide comparative ChIP-seq data of H3K27me3 and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer RNA-seq of coding RNA Drosophila melanogaster, Drosophila pseudoobscura, Drosophila simulans, Drosophila yakuba 4 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49945/E-GEOD-49945.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49945/ E-GEOD-49931 The transcription factor IRF4 is essential for T cell receptor affinity mediated metabolic programming and clonal expansion of T cells ChIP-seq, RNA-seq of coding RNA Mus musculus 13 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49931/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49931/ E-GEOD-49930 The transcription factor IRF4 is essential for T cell receptor affinity mediated metabolic programming and clonal expansion of T cells [ChIP-seq] ChIP-seq Mus musculus 2 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49930/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49930/ E-GEOD-49929 The transcription factor IRF4 is essential for T cell receptor affinity mediated metabolic programming and clonal expansion of T cells [RNA-seq] RNA-seq of coding RNA Mus musculus 11 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49929/E-GEOD-49929.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49929/ E-GEOD-45748 Addiction of t(8;21) and inv(16) AML to native RUNX1 ChIP-seq, transcription profiling by array Homo sapiens 24 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45748/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45748/E-GEOD-45748.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45748/ E-GEOD-44325 Sost and its paralog Sostdc1 coordinate digit number in a Gli3-dependent manner transcription profiling by array Mus musculus 5 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44325/E-GEOD-44325.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44325/E-GEOD-44325.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44325/ E-GEOD-40288 Maize kernels: Non Inoculated vs. Inoculated with Fusarium verticillioides transcription profiling by array Zea mays 6 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40288/E-GEOD-40288.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40288/E-GEOD-40288.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40288/ E-GEOD-40260 Microarray using CD31+/CD41-/CD45- cells from E9.5 mouse heart tube, caudal half and yolk sac transcription profiling by array Mus musculus 6 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40260/E-GEOD-40260.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40260/E-GEOD-40260.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40260/ E-GEOD-37330 Gene expression profile after injection of recombinant deleted non-virion protein gene (NV) VHSV transcription profiling by array Oncorhynchus mykiss 8 2013-08-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37330/E-GEOD-37330.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37330/E-GEOD-37330.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37330/ E-GEOD-49928 Genome-wide effects of Spt6 on RNA pol II and Histone H3 occupancy in budding yeast ChIP-seq, ChIP-chip by tiling array Saccharomyces cerevisiae 8 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49928/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49928/E-GEOD-49928.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49928/ E-GEOD-49927 Genome-wide effects of Spt6 on RNA pol II and Histone H3 occupancy in budding yeast (ChIP-Chip) ChIP-chip by tiling array Saccharomyces cerevisiae 5 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49927/E-GEOD-49927.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49927/E-GEOD-49927.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49927/ E-GEOD-49926 Genome-wide effects of Spt6 on RNA pol II and Histone H3 occupancy in budding yeast (ChIP-Seq) ChIP-seq Saccharomyces cerevisiae 3 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49926/E-GEOD-49926.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49926/ E-GEOD-49924 Irradiation of human and mouse placental cells transcription profiling by array Homo sapiens, Mus musculus 24 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49924/E-GEOD-49924.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49924/E-GEOD-49924.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49924/ E-GEOD-49923 Mouse placenta irradiaion transcription profiling by array Mus musculus 12 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49923/E-GEOD-49923.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49923/ E-GEOD-49922 Primary term human trophoblasts exposed to ionizing irradiation transcription profiling by array Homo sapiens 12 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49922/E-GEOD-49922.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49922/E-GEOD-49922.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49922/ E-GEOD-49910 An Expression Atlas of Human Primary Cells: Inference of Gene Function from Coexpression Networks transcription profiling by array, unknown experiment type Homo sapiens 46 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49910/E-GEOD-49910.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49910/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49910/ E-GEOD-49909 Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape methylation profiling by array Homo sapiens 283 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49909/E-GEOD-49909.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49909/ E-GEOD-49908 Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [muscle] methylation profiling by array Homo sapiens 51 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49908/E-GEOD-49908.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49908/ E-GEOD-49907 Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [kidney] methylation profiling by array Homo sapiens 83 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49907/E-GEOD-49907.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49907/ E-GEOD-49905 Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [brain] methylation profiling by array Homo sapiens 78 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49905/E-GEOD-49905.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49905/ E-GEOD-49904 Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [blood] methylation profiling by array Homo sapiens 71 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49904/E-GEOD-49904.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49904/ E-GEOD-49901 Molecular analysis of a case of renal cell carcinoma with t(6;11) (p21;q12) reveals a link to a lysosome-like structure transcription profiling by array Homo sapiens 2 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49901/E-GEOD-49901.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49901/E-GEOD-49901.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49901/ E-GEOD-49899 Diverse patterns of genome-wide DNA targeting by transcriptional regulators in Drosophila melanogaster ChIP-seq Drosophila melanogaster 47 2013-08-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49899/ E-GEOD-49807 Chromatin position effects assayed by thousands of reporters integrated in parallel (cell lines with mPGK IRs) other, RNA-seq of coding RNA Mus musculus 44 2013-08-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49807/ E-GEOD-49806 Chromatin position effects assayed by thousands of reporters integrated in parallel (tet-Off TRIP pools) other, RNA-seq of coding RNA Mus musculus 80 2013-08-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49806/ E-GEOD-49631 Characteristic molecular and proteomic signatures of drug-induced liver injury in a rat model transcription profiling by array Rattus norvegicus 286 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49631/E-GEOD-49631.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49631/ E-GEOD-48817 A Unifying Model for Molecular Determinants of the Pre-selection V? Repertoire ChIP-seq Mus musculus 3 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48817/E-GEOD-48817.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48817/ E-GEOD-48608 Chromatin position effects assayed by thousands of reporters integrated in parallel (mPGK TRIP pools) other, RNA-seq of coding RNA Mus musculus 72 2013-08-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48608/ E-GEOD-48607 Chromatin position effects assayed by thousands of reporters integrated in parallel (RNA-Seq) RNA-seq of coding RNA Mus musculus 11 2013-08-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48607/ E-GEOD-48606 Chromatin position effects assayed by thousands of reporters integrated in parallel other, RNA-seq of coding RNA Mus musculus 207 2013-08-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48606/ E-GEOD-48448 Expression data from LoVo and GP5d CRC cell lines transcription profiling by array Homo sapiens 8 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48448/E-GEOD-48448.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48448/E-GEOD-48448.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48448/ E-GEOD-47732 Dynamic Transcriptional Response of Escherichia coli to Inclusion Body Formation transcription profiling by array Escherichia coli str. K-12 substr. MG1655 48 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47732/E-GEOD-47732.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47732/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47732/ E-GEOD-47448 Metabolism of four ?-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003 transcription profiling by array Bifidobacterium breve, Bifidobacterium breve UCC2003 6 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47448/E-GEOD-47448.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47448/E-GEOD-47448.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47448/ E-GEOD-45577 Profiling of glycerol- and CTX-induced models of muscle regeneration in mice transcription profiling by array Mus musculus 48 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45577/E-GEOD-45577.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45577/E-GEOD-45577.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45577/ E-GEOD-44727 A Robust Method To Derive Functional Neural Crest Cells From Human Pluripotent Stem Cells transcription profiling by array Homo sapiens 6 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44727/E-GEOD-44727.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44727/E-GEOD-44727.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44727/ E-GEOD-41030 Chronic kidney disease and splicing events transcription profiling by array Homo sapiens 6 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41030/E-GEOD-41030.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41030/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41030/ E-GEOD-41021 Retinoic acid determines the in vivo fate-commitment of splenic pre-dendritic cells transcription profiling by array Mus musculus 16 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41021/E-GEOD-41021.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41021/E-GEOD-41021.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41021/ E-GEOD-31455 Primary human hepatocytes treated with IL28B and the HCV JFH1 Genotype 2A clone. transcription profiling by array Homo sapiens 12 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31455/E-GEOD-31455.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31455/E-GEOD-31455.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31455/ E-GEOD-31378 Host cell gene expression in Human respiratory syncytial virus (HRSV) infected mouse macrophage cells at 4, 24 hours post infection transcription profiling by array Mus musculus 9 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31378/E-GEOD-31378.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31378/E-GEOD-31378.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31378/ E-GEOD-28524 DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis RNA-seq of coding RNA, RNA-seq of non coding RNA Arabidopsis thaliana 6 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28524/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28524/ E-GEOD-28512 DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis (smRNA-seq) RNA-seq of non coding RNA Arabidopsis thaliana 2 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28512/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28512/ E-GEOD-28509 DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis (RNA-seq) RNA-seq of coding RNA Arabidopsis thaliana 4 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28509/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28509/ E-GEOD-23660 Genome heterogeneity in Lactobacillus helveticus: Rethinking a ?niche specialist?* comparative genomic hybridization by array Lactobacillus helveticus 42 2013-08-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23660/E-GEOD-23660.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23660/E-GEOD-23660.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23660/ E-MTAB-1602 Transcription profiling by array of Lrig1 expressing and non-expressing cells isolated by flow cytometry from the intestinal epithelium of Lrig1:eGFPiresCreERT2 (Lrig1 KI) mice transcription profiling by array Mus musculus 6 2013-08-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1602/E-MTAB-1602.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1602/ E-MTAB-1257 Transcription profiling by array of pyrethroid resistance in field populations of Anopheles funestus transcription profiling by array Anopheles funestus 32 2013-08-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1257/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1257/ E-MEXP-3946 Transcription profiling by array of Alexandrium tamarense at different pCO2 levels transcription profiling by array Alexandrium tamarense 9 2013-08-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3946/E-MEXP-3946.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3946/ E-GEOD-49920 Antenatal maternal long-term hypoxia: acclimatization responses with altered gene expression in ovine fetal carotid arteries transcription profiling by array Ovis aries 8 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49920/E-GEOD-49920.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49920/E-GEOD-49920.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49920/ E-GEOD-49913 Transcriptional profiling of nitrogen fixation and the role of NifA in the diazotrophic endophyte Azoarcus sp. strain BH72 transcription profiling by array Azoarcus sp. 6 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49913/E-GEOD-49913.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49913/E-GEOD-49913.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49913/ E-GEOD-49912 Transcriptome comparison of the wild type strain Azoarcus sp. BH72 with that of nifLA knockout strain under nitrogen fixing condition transcription profiling by array Azoarcus sp. 3 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49912/E-GEOD-49912.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49912/E-GEOD-49912.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49912/ E-GEOD-49895 Gene regulation in LPS-induced PTB in E15.5 C57BL/6 mice transcription profiling by array Mus musculus 5 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49895/E-GEOD-49895.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49895/ E-GEOD-49893 RNA-Seq and expression microarray highlight different aspects of the fetal transcriptome transcription profiling by array, RNA-seq of coding RNA Homo sapiens 10 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49893/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49893/E-GEOD-49893.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49893/ E-GEOD-49891 RNA-Seq and expression microarray highlight different aspects of the fetal transcriptome [microarray] transcription profiling by array Homo sapiens 5 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49891/E-GEOD-49891.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49891/E-GEOD-49891.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49891/ E-GEOD-49890 RNA-Seq and expression microarray highlight different aspects of the fetal transcriptome [RNA-Seq] RNA-seq of coding RNA Homo sapiens 5 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49890/E-GEOD-49890.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49890/ E-GEOD-49875 HuMiChip analysis of Saliva microbiota comparative genomic hybridization by array human oral metagenome 20 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49875/E-GEOD-49875.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49875/E-GEOD-49875.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49875/ E-GEOD-49871 The roles of IRF-3 and IRF-7 in innate antiviral immunity against dengue virus transcription profiling by RT-PCR Mus musculus 40 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49871/E-GEOD-49871.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49871/ E-GEOD-49869 Genome-wide analysis of HL60 cells after 24h pulse of 10nM vincristine transcription profiling by array Homo sapiens 9 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49869/E-GEOD-49869.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49869/ E-GEOD-49864 Non-neuronal acetylcholine as an endogenous regulator of proliferation and differentiation of Lgr5-positive stem cells in mice transcription profiling by array Mus musculus 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49864/E-GEOD-49864.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49864/E-GEOD-49864.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49864/ E-GEOD-49520 microRNA Dysregulation in Human Prostate Cancer Cell Model (M12 and P69) transcription profiling by RT-PCR Homo sapiens 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49520/E-GEOD-49520.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49520/ E-GEOD-49402 Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites ChIP-seq Homo sapiens 225 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49402/E-GEOD-49402.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49402/ E-GEOD-49162 A Proneural to Mesenchymal Transition Mediated by NFkB Promotes Radiation Resistance in Glioblastoma (part 2) transcription profiling by array Homo sapiens 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49162/E-GEOD-49162.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49162/E-GEOD-49162.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49162/ E-GEOD-49161 A Proneural to Mesenchymal Transition Mediated by NFkB Promotes Radiation Resistance in Glioblastoma (part 1) transcription profiling by array Homo sapiens 17 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49161/E-GEOD-49161.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49161/E-GEOD-49161.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49161/ E-GEOD-49012 Relationship between Differential Hepatic microRNA Expression and Decreased Hepatic Cytochrome P450 3A Activity in Cirrhosis transcription profiling by array Homo sapiens 34 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49012/E-GEOD-49012.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49012/E-GEOD-49012.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49012/ E-GEOD-49009 A Proneural to Mesenchymal Transition Mediated by NFkB Promotes Radiation Resistance in Glioblastoma RNA-seq of coding RNA Homo sapiens 21 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49009/E-GEOD-49009.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49009/E-GEOD-49009.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49009/ E-GEOD-47807 LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs other, RNA-seq of coding RNA Homo sapiens 12 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47807/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47807/ E-GEOD-47806 LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [GRO-seq II] RNA-seq of coding RNA Homo sapiens 6 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47806/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47806/ E-GEOD-47805 LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [GRO-seq I] RNA-seq of coding RNA Homo sapiens 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47805/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47805/ E-GEOD-47804 LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [ChIRP-seq] other Homo sapiens 2 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47804/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47804/ E-GEOD-47459 Program specificity for Ptf1a in Pancreas versus Neural Tube Development correlates with distinct collaborating cofactors and chromatin accessibility ChIP-seq, RNA-seq of coding RNA Mus musculus 18 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47459/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47459/ E-GEOD-46667 Lymphotoxin-beta receptor activation in HBV-infected HepaRG cells transcription profiling by array Homo sapiens 8 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46667/E-GEOD-46667.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46667/E-GEOD-46667.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46667/ E-GEOD-46581 Yale Triple Negative Breast Cancer Cohort transcription profiling by array Homo sapiens 90 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46581/E-GEOD-46581.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46581/ E-GEOD-46339 Genome-enabled studies of anaerobic, nitrate-dependent Fe(II) oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans transcription profiling by array Thiobacillus denitrificans ATCC 25259 25 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46339/E-GEOD-46339.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46339/ E-GEOD-45875 Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing ChIP-seq Mus musculus 8 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45875/E-GEOD-45875.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45875/ E-GEOD-45653 Iron stimulon and Fur regulon transcription profiling by array Caulobacter crescentus NA1000 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45653/E-GEOD-45653.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45653/E-GEOD-45653.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45653/ E-GEOD-45360 Differential gene expression during Exobasidium vexans and Pestalotiopsis theae infection in tea by DNA Microarray transcription profiling by array Camellia sinensis 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45360/E-GEOD-45360.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45360/E-GEOD-45360.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45360/ E-GEOD-42938 Abrupt scrib- vs. Abrupt and RasV12 (RasACT) scrib-, NotchICD (NACT) scrib- +/- JNK (Bsk) expression profiles transcription profiling by array Drosophila melanogaster 21 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42938/E-GEOD-42938.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42938/E-GEOD-42938.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42938/ E-GEOD-42928 The BTB-zinc finger transcription factor Abrupt acts as an epithelial oncogene in Drosophila through maintaining a progenitor-like cell state ChIP-seq Drosophila melanogaster 4 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42928/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42928/ E-GEOD-41066 A defect in ATP-citrate lyase links acetyl-CoA production, virulence factor elaboration and virulence in Cryptococcus neoformans transcription profiling by SAGE Cryptococcus neoformans var. grubii H99 2 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41066/E-GEOD-41066.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41066/ E-GEOD-38872 Liver gene expression profile _ wild type_ CYP7A1 transgenic transcription profiling by array Mus musculus 16 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38872/E-GEOD-38872.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38872/E-GEOD-38872.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38872/ E-GEOD-19281 S100P is a metastasis-associated gene that facilitates transendothelial migration of pancreatic cancer cells transcription profiling by array Homo sapiens 37 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19281/E-GEOD-19281.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19281/E-GEOD-19281.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19281/ E-GEOD-19280 S100P is a metastasis-associated gene that facilitates transendothelial migration of pancreatic cancer cells [HG-U133B] transcription profiling by array Homo sapiens 15 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19280/E-GEOD-19280.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19280/E-GEOD-19280.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19280/ E-GEOD-19279 S100P is a metastasis-associated gene that facilitates transendothelial migration of pancreatic cancer cells [HG-U133A] transcription profiling by array Homo sapiens 15 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19279/E-GEOD-19279.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19279/E-GEOD-19279.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19279/ E-GEOD-19278 S100P is a metastasis-associated gene that facilitates transendothelial migration of pancreatic cancer cells [HG-U133_Plus_2] transcription profiling by array Homo sapiens 7 2013-08-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19278/E-GEOD-19278.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19278/E-GEOD-19278.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19278/ E-MTAB-1606 Transcription profiling by array of CD34+ve, Lrig1-eGFP positive and negative cells from mouse back skin epidermis to investigate tissue compartmentalization and distinct stem cell behaviour underlying epidermal homeostasis transcription profiling by array Mus musculus 9 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1606/E-MTAB-1606.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1606/E-MTAB-1606.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1606/ E-MTAB-1253 Myb-domain protein Teb1 controls histone levels and centromere assembly in fission yeast transcription profiling by array Schizosaccharomyces pombe 7 2013-08-14 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1253/E-MTAB-1253.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1253/ E-MEXP-3765 Transcription profiling by array of E. coli under different naphthoquinone treatments transcription profiling by array Escherichia coli 4 2013-08-14 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3765/E-MEXP-3765.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3765/ E-GEOD-49858 Gene expression of SCP-1 cells after incubation with conditioned medium of the breast carcinoma cell line MCF-7. transcription profiling by array Homo sapiens 6 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49858/E-GEOD-49858.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49858/E-GEOD-49858.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49858/ E-GEOD-49857 HuR and miR-1192 regulate myogenesis by modulating the translation of HMGB1 mRNA transcription profiling by array Mus musculus 4 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49857/E-GEOD-49857.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49857/E-GEOD-49857.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49857/ E-GEOD-49856 HuR and miR-1192 regulate myogenesis by modulating the translation of HMGB1 mRNA (mRNA) transcription profiling by array Mus musculus 2 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49856/E-GEOD-49856.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49856/E-GEOD-49856.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49856/ E-GEOD-49855 HuR and miR-1192 regulate myogenesis by modulating the translation of HMGB1 mRNA (miRNA) transcription profiling by array Mus musculus 2 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49855/E-GEOD-49855.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49855/ E-GEOD-49851 Dentate gyrus in epileptic rats transcription profiling by array Rattus norvegicus 60 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49851/E-GEOD-49851.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49851/E-GEOD-49851.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49851/ E-GEOD-49850 Alterations in miRNA levels in the dentate gyrus in epileptic rats transcription profiling by array Rattus norvegicus 40 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49850/E-GEOD-49850.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49850/E-GEOD-49850.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49850/ E-GEOD-49849 Alterations in mRNA levels in the dentate gyrus in epileptic rats transcription profiling by array Rattus norvegicus 20 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49849/E-GEOD-49849.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49849/E-GEOD-49849.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49849/ E-GEOD-49844 Transcriptomics analysis of gene expression in normal and Smg6 deficient mouse ES cells RNA-seq of coding RNA Mus musculus 4 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49844/E-GEOD-49844.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49844/ E-GEOD-49841 Microarray analysis of deletants of two transcription factor B in the hyperthermophilic archaeon, Thermococcus kodakarensis. transcription profiling by array Thermococcus kodakarensis 12 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49841/E-GEOD-49841.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49841/E-GEOD-49841.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49841/ E-GEOD-49821 Transcriptome analysis during seed germination of elite Chinese bread wheat cultivar Jimai 20 transcription profiling by array Triticum aestivum 15 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49821/E-GEOD-49821.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49821/E-GEOD-49821.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49821/ E-GEOD-49820 Misregulation of the broad-range phospholipase C activity increases the susceptibility of Listeria monocytogenes to intracellular killing by neutrophils transcription profiling by array Mus musculus 24 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49820/E-GEOD-49820.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49820/E-GEOD-49820.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49820/ E-GEOD-49234 A Unifying Model for Molecular Determinants of the Pre-selection Vb Repertoire RNA-seq of coding RNA, ChIP-chip by tiling array Mus musculus 5 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49234/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49234/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49234/ E-GEOD-49233 A Unifying Model for Molecular Determinants of the Pre-selection Vb Repertoire [RNA-Seq] RNA-seq of coding RNA Mus musculus 1 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49233/E-GEOD-49233.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49233/ E-GEOD-43088 Genome-wide expression of transcriptomes under waterlogging stress condition in subtropical maize transcription profiling by array Zea mays 16 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43088/E-GEOD-43088.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43088/E-GEOD-43088.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43088/ E-GEOD-42851 A Unifying Model for Molecular Determinants of the Pre-selection V? Repertoire [ChIP-chip] ChIP-chip by tiling array Mus musculus 4 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42851/E-GEOD-42851.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42851/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42851/ E-GEOD-42422 Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq. ChIP-seq Glycine max 2 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42422/E-GEOD-42422.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42422/ E-GEOD-40090 Mouse whole kidney, Dot1lAC vs. Dot1lf/f mice transcription profiling by array Mus musculus 1 2013-08-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40090/E-GEOD-40090.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40090/E-GEOD-40090.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40090/ E-MTAB-993 IGR_BLADDER_GE_STUDY_JA transcription profiling by array Homo sapiens 109 2013-08-13 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-993/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-993/ E-GEOD-49842 ChIP-seq analysis of M1BP in Drosophila S2R+ cells ChIP-seq Drosophila melanogaster 2 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49842/E-GEOD-49842.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49842/ E-GEOD-49839 A Parallel Study of mRNA and MicroRNA Profiling of Peripheral Blood in Young Adult Women (mRNA Profiling) transcription profiling by array Homo sapiens 22 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49839/E-GEOD-49839.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49839/ E-GEOD-49837 A Parallel Study of mRNA and MicroRNA Profiling of Peripheral Blood in Young Adult Women (MicroRNA Profiling) transcription profiling by array Homo sapiens 22 2013-08-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49837/ E-GEOD-49823 miRNA profiling of plasma samples: patients with unstable coronary artery disease and controls transcription profiling by RT-PCR Homo sapiens 26 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49823/E-GEOD-49823.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49823/ E-GEOD-49813 Cisplatin sensitivity in nasopharyngeal carcinoma cells (NPC) transcription profiling by array Homo sapiens 28 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49813/E-GEOD-49813.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49813/E-GEOD-49813.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49813/ E-GEOD-49810 Expression and copy number data from five primary human glioblastomas transcription profiling by array, comparative genomic hybridization by array Homo sapiens 11 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49810/E-GEOD-49810.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49810/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49810/ E-GEOD-49808 Copy number data from five primary human glioblastomas (frozen surgical resection) comparative genomic hybridization by array Homo sapiens 5 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49808/E-GEOD-49808.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49808/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49808/ E-GEOD-49799 DamID data for Comr binding in drosophila testes ChIP-chip by array Drosophila melanogaster 2 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49799/E-GEOD-49799.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49799/E-GEOD-49799.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49799/ E-GEOD-49797 Maternal overnutrition causes insulin resistance and alters skeletal muscle oxidative phosphorylation in adult rat offspring RNA-seq of coding RNA Rattus norvegicus 11 2013-08-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49797/ E-GEOD-49787 Expression data of leukemia samples taken from transgenic ERG mice transcription profiling by array Mus musculus 9 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49787/E-GEOD-49787.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49787/E-GEOD-49787.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49787/ E-GEOD-49412 Expression data from five primary human glioblastomas (frozen surgical resection) and one non-neoplastic adult brain (frozen autopsy tissue) transcription profiling by array Homo sapiens 6 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49412/E-GEOD-49412.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49412/E-GEOD-49412.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49412/ E-GEOD-49257 The transcriptome of erythromycin-resistant Campylobacter jejuni strain selected from NCTC 11168 transcription profiling by array Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 8 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49257/E-GEOD-49257.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49257/E-GEOD-49257.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49257/ E-GEOD-49256 The role of the Cj0440c gene in Campylobacter jejuni transcription profiling by array Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 8 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49256/E-GEOD-49256.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49256/E-GEOD-49256.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49256/ E-GEOD-49255 The role of the Cj0440c gene in erythromycin-resistant (Eryr) Campylobacter jejuni transcription profiling by array Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 8 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49255/E-GEOD-49255.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49255/E-GEOD-49255.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49255/ E-GEOD-48336 FOXO3 shares common targets with ASCL1 genome-wide and inhibits ASCL1-dependent neurogenesis ChIP-seq Mus musculus 7 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48336/E-GEOD-48336.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48336/ E-GEOD-47678 Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition ChIP-seq, RNA-seq of coding RNA Homo sapiens 22 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47678/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47678/ E-GEOD-47677 Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [ChIP-Seq] ChIP-seq Homo sapiens 10 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47677/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47677/ E-GEOD-47488 Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [RNA-Seq] RNA-seq of coding RNA Homo sapiens 12 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47488/E-GEOD-47488.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47488/ E-GEOD-47362 Epigenetic determinants of muscle stem cell quiescence and chronological aging (ChIP-seq) ChIP-seq Mus musculus 11 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47362/E-GEOD-47362.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47362/ E-GEOD-46630 The newly identified transcription factor M1BP ad GAGA factor orchestrate distinct mechanisms of transcriptional regulation on paused genes ChIP-seq, transcription profiling by array Drosophila melanogaster 10 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46630/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46630/E-GEOD-46630.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46630/ E-GEOD-46629 Expression analysis of Drosophila S2R+ cells depleted of M1BP by RNAi transcription profiling by array Drosophila melanogaster 8 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46629/E-GEOD-46629.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46629/E-GEOD-46629.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46629/ E-GEOD-46357 Developmental changes in the in vitro activated regenerative activity of primitive mammary epithelial cells transcription profiling by array Mus musculus 6 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46357/E-GEOD-46357.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46357/E-GEOD-46357.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46357/ E-GEOD-46204 Cooler temperatures destabilize RNA interference and increase susceptibility of disease vector mosquitoes to viral infection RNA-seq of non coding RNA Aedes aegypti, Aedes albopictus 8 2013-08-13 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46204/ E-GEOD-42778 Gene expression microarray analysis on the medial prefrontal cortex and dentate gyrus of Schnurri-2 knockout and wild-type control mice transcription profiling by array Mus musculus 24 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42778/E-GEOD-42778.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42778/E-GEOD-42778.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42778/ E-GEOD-42777 Gene expression microarray analysis on the dentate gyrus of Schnurri-2 knockout and wild-type control mice transcription profiling by array Mus musculus 12 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42777/E-GEOD-42777.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42777/E-GEOD-42777.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42777/ E-GEOD-42775 Gene expression microarray analysis on the medial prefrontal cortex of Schnurri-2 knockout and wild-type control mice transcription profiling by array Mus musculus 12 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42775/E-GEOD-42775.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42775/E-GEOD-42775.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42775/ E-GEOD-41307 Gene expression microarray analysis on hippocampus of Schnurri-2 knockout and wild-type control mice transcription profiling by array Mus musculus 8 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41307/E-GEOD-41307.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41307/E-GEOD-41307.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41307/ E-GEOD-39729 HSC-3 cells (control) vs. HSC-3-5 cells transcription profiling by array Homo sapiens 5 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39729/E-GEOD-39729.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39729/E-GEOD-39729.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39729/ E-GEOD-39726 HSC-3 cells (control) vs. HSC-3-5 cells [subcutaneous tumor] transcription profiling by array Homo sapiens 2 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39726/E-GEOD-39726.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39726/E-GEOD-39726.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39726/ E-GEOD-39725 HSC-3 cells (control) vs. HSC-3-5 cells [tongue] transcription profiling by array Homo sapiens 2 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39725/E-GEOD-39725.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39725/E-GEOD-39725.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39725/ E-GEOD-39723 HSC-3 cells (control) vs. HSC-3-5 cells [cell line] transcription profiling by array Homo sapiens 1 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39723/E-GEOD-39723.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39723/E-GEOD-39723.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39723/ E-GEOD-38272 Effect of cFP on gene expression in Vibiro cholerae transcription profiling by array Vibrio cholerae O1 biovar El Tor str. N16961 4 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38272/E-GEOD-38272.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38272/E-GEOD-38272.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38272/ E-GEOD-33650 Gene Expression differences in Hepatic Parenchyma and Portal Tracts in Hepatitis C Virus Infected Subjects with High and Low Fibrosis transcription profiling by array Homo sapiens 72 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33650/E-GEOD-33650.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33650/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33650/ E-GEOD-30205 A Parallel Study of mRNA and MicroRNA Profiling of Peripheral Blood in Young Adult Women transcription profiling by array Homo sapiens 44 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30205/E-GEOD-30205.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30205/ E-GEOD-24919 B lymphocyte activation induces DNA methylation reprogramming and establishes a common epigenetic signature in memory B and plasma cell compartments transcription profiling by array, methylation profiling by array , Homo sapiens 68 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24919/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24919/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24919/ E-GEOD-24918 B lymphocyte activation induces DNA methylation reprogramming and establishes a common epigenetic signature in memory B and plasma cell compartments [DNA methylation profiling] methylation profiling by array Homo sapiens 32 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24918/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24918/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24918/ E-GEOD-24863 B lymphocyte activation induces DNA methylation reprogramming and establishes a common epigenetic signature in memory B and plasma cell compartments [gene expression profiling] transcription profiling by array Homo sapiens 36 2013-08-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24863/E-GEOD-24863.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24863/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24863/ E-MTAB-1644 Transcription profiling by array of murine long term hematopoietic stem cells, short term hematopoietic stem cells and hematopoietic multipotent progenitor cells isolated from bone marrow transcription profiling by array Mus musculus 9 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1644/E-MTAB-1644.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1644/E-MTAB-1644.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1644/ E-MTAB-1628 RNA-seq of coding RNA of mouse long term hematopoietic stem cells, short term hematopoietic stem cells and hematopoietic multipotent progenitor cells to investigate maternal-specific imprinting in the H19-Igf2 locus RNA-seq of coding RNA Mus musculus 12 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1628/E-MTAB-1628.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1628/ E-MTAB-1423 ChIP-seq of mouse neural stem cells cultuered in either proliferation-promoting medium (proNSC) or quiescence-promoting medium (quiNSC) on p300, Nuclear factor-I (NFI) and acetylated H3K27 (H3K27ac) ChIP-seq Mus musculus 7 2013-08-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1423/ E-MTAB-1398 Transcription profiling by tiling array of Saccharomyces cerevisiae strains grown in four media to investigate pathways mediating genetic signals to phenotype transcription profiling by tiling array Saccharomyces cerevisiae 135 2013-08-12 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1398/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1398/ E-MTAB-1331 Transcription profiling by array of human W12 cell lines transfected with HPV16 siRNA as a model to study cervical neoplastic progression transcription profiling by array Homo sapiens 36 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1331/E-MTAB-1331.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1331/E-MTAB-1331.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1331/ E-MEXP-3935 Transcription profiling by array of mouse hematopoietic stem cells expressing or not expressing a Vwf-EGFP BAC transgene transcription profiling by array Mus musculus 4 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3935/E-MEXP-3935.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3935/E-MEXP-3935.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3935/ E-MEXP-3755 Transcription profiling by array of D. melanogaster whole embryos to investigate localized wound response genes by srine protease-mediated wounding transcription profiling by array Drosophila melanogaster 18 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3755/E-MEXP-3755.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3755/E-MEXP-3755.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3755/ E-GEOD-49641 Expression data from peripheral blood in pancreatic ductal adenocarcinoma (PDAC) patients transcription profiling by array Homo sapiens 36 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49641/E-GEOD-49641.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49641/E-GEOD-49641.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49641/ E-GEOD-48044 N-acetylglucosamine (GlcNAc) Triggers a Rapid, Temperature-Responsive Morphogenetic Program in Thermally Dimorphic Fungi transcription profiling by array Ajellomyces capsulatus 23 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48044/E-GEOD-48044.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48044/E-GEOD-48044.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48044/ E-GEOD-46949 Epigenetic and genetic influences on DNA methylation variation in maize populations methylation profiling by array Zea mays 86 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46949/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46949/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46949/ E-GEOD-42668 Effect of cigarette smoke on gene expression in mammary epithelial cells transcription profiling by array, methylation profiling by array Homo sapiens 4 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42668/E-GEOD-42668.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42668/E-GEOD-42668.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42668/ E-GEOD-42667 Effect of cigarette smoke on gene expression in mammary epithelial cells [gene expression] transcription profiling by array Homo sapiens 2 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42667/E-GEOD-42667.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42667/E-GEOD-42667.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42667/ E-GEOD-42623 Effect of cigarette smoke on gene expression in mammary epithelial cells [methylation] methylation profiling by array Homo sapiens 2 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42623/E-GEOD-42623.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42623/ E-GEOD-41263 Affymetrix SNP array data for pediatric rhabdomyosarcoma (RMS) ChIP-chip by SNP array, genotyping by array Homo sapiens 46 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41263/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41263/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41263/ E-GEOD-23533 Effect of light on gene expression in Schizophyllum commune transcription profiling by SAGE Schizophyllum commune 4 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23533/E-GEOD-23533.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23533/ E-GEOD-23531 Effect of sc3 and sc4 on aerial hypha formation transcription profiling by SAGE Schizophyllum commune 5 2013-08-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23531/E-GEOD-23531.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23531/ E-GEOD-49780 TCF_WPP_ChIP-seq ChIP-seq Drosophila melanogaster 6 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49780/ E-GEOD-49779 TCF_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 6 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49779/ E-GEOD-49778 TCF_nonISO1_0-8_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49778/ E-GEOD-49777 dTBP_0-8h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49777/ E-GEOD-49776 Su(H)_0-8_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 6 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49776/ E-GEOD-49775 Stat92E-GFP_12-24h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49775/ E-GEOD-49774 dMyc_W3L_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49774/ E-GEOD-49773 lola-PJ-GFP_12-24h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49773/ E-GEOD-49772 lola-PJ-GFP_0-12h_embryo_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49772/ E-GEOD-49771 H_0-8h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49771/ E-GEOD-49770 gro_WPP_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49770/ E-GEOD-49769 Eip74EF-GFP_8-16h_embryonic_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49769/ E-GEOD-49768 Dll_WPP_ChIP-seq ChIP-seq Drosophila melanogaster 4 2013-08-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49768/ E-GEOD-49698 Human cell toxicogenomic analysis links reactive oxygen species to the toxicity of monohaloacetic acid drinking water disinfection byproducts transcription profiling by RT-PCR Homo sapiens 12 2013-08-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49698/E-GEOD-49698.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49698/ E-GEOD-48172 Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells ChIP-seq, RNA-seq of coding RNA Mus musculus 28 2013-08-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48172/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48172/ E-GEOD-43600 Eisenia andrei exposed to different 2-phenylethyl isothiocyanate concentrations in soil transcription profiling by array Eisenia andrei 12 2013-08-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43600/E-GEOD-43600.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43600/E-GEOD-43600.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43600/ E-GEOD-40127 GEI-8, a homologue of vertebrate nuclear receptor corepressor NCoR/SMRT, regulates development and neuronal functions in C. elegans. transcription profiling by array Caenorhabditis elegans 6 2013-08-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40127/E-GEOD-40127.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40127/E-GEOD-40127.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40127/ E-MTAB-784 Transcriptome profiling of a backcross between experimental autoimmune encephalomyelitis (EAE)-susceptible DA and EAE-resistant PVG rat strains to identify expression quantitative trait loci. transcription profiling by array Rattus norvegicus 150 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-784/E-MTAB-784.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-784/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-784/ E-MEXP-3059 Transcription profiling by array of Treponema denticola grown with cell-cell contact with other red complex organisms transcription profiling by array Treponema denticola 18 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3059/E-MEXP-3059.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3059/E-MEXP-3059.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3059/ E-GEOD-49751 seq-SDQ2946_HCP4_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49751/E-GEOD-49751.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49751/ E-GEOD-49750 seq-SDQ3898_KLE2_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49750/E-GEOD-49750.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49750/ E-GEOD-49749 seq-SDQ2340_HPL2_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49749/E-GEOD-49749.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49749/ E-GEOD-49748 seq-SDQ2972_HIM8_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49748/E-GEOD-49748.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49748/ E-GEOD-49747 seq-SDQ1665_1666_MRG1_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49747/E-GEOD-49747.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49747/ E-GEOD-49746 seq-SDQ0821_SCC1_FEM2_AD ChIP-seq Caenorhabditis elegans 2 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49746/E-GEOD-49746.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49746/ E-GEOD-49745 seq-SDQ0812_COH1_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49745/E-GEOD-49745.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49745/ E-GEOD-49744 seq-ab8896_H3K9me1_104560_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49744/E-GEOD-49744.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49744/ E-GEOD-49743 seq-ab2621_H3K79me3_361576_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49743/E-GEOD-49743.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49743/ E-GEOD-49742 seq-ab3594_H3K79me2_346021_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49742/E-GEOD-49742.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49742/ E-GEOD-49741 seq-ab2886_H3K79me1_361912_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49741/E-GEOD-49741.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49741/ E-GEOD-49740 seq-ab9048_H3K36me1_206009_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49740/E-GEOD-49740.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49740/ E-GEOD-49739 seq-WA30532379_H3K4me3_10001_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49739/E-GEOD-49739.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49739/ E-GEOD-49738 seq-HK00013_H3K27me3_1E7_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49738/E-GEOD-49738.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49738/ E-GEOD-49737 seq-ab15823_H4K8ac_487128_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49737/E-GEOD-49737.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49737/ E-GEOD-49736 seq-HK00008_H3K9me2_6D11_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49736/E-GEOD-49736.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49736/ E-GEOD-49735 seq-UP07448_H3K27me1_24439_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49735/E-GEOD-49735.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49735/ E-GEOD-49734 seq-WA30634849_H3K27ac_8002_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49734/E-GEOD-49734.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49734/ E-GEOD-49733 seq-WA30834809_H3K4me2_8002_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49733/E-GEOD-49733.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49733/ E-GEOD-49732 seq-ab8898_H3K9me3_339901_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49732/E-GEOD-49732.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49732/ E-GEOD-49731 seq-ab1191_H3K18ac_GR311521_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49731/E-GEOD-49731.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49731/ E-GEOD-49730 seq-MP07355_H3K23ac_27133_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49730/E-GEOD-49730.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49730/ E-GEOD-49729 seq-ab12181_H3K9acS10ph_873968_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49729/E-GEOD-49729.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49729/ E-GEOD-49728 seq-HK00008_H3K9me2:6D11_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49728/E-GEOD-49728.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49728/ E-GEOD-49727 seq-ab9048_H3K36me1:206009_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49727/E-GEOD-49727.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49727/ E-GEOD-49726 seq-AB3594_H3K79me2:346021_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49726/E-GEOD-49726.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49726/ E-GEOD-49725 seq-AB1191_H3K18ac_GR311521_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49725/E-GEOD-49725.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49725/ E-GEOD-49724 seq-UP07449_H3K27me3:24440_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49724/E-GEOD-49724.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49724/ E-GEOD-49723 seq-UP07448_H3K27me1:24439_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49723/E-GEOD-49723.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49723/ E-GEOD-49722 seq-NB211254_H3K36ac_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49722/E-GEOD-49722.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49722/ E-GEOD-49721 seq-HK00012_H3K36me2:2C3_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49721/E-GEOD-49721.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49721/ E-GEOD-49720 seq-HK00009_H3K9me3:2F3_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49720/E-GEOD-49720.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49720/ E-GEOD-49719 seq-AB8898_H3K9me3:33990_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49719/E-GEOD-49719.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49719/ E-GEOD-49718 seq-AB2621_H3K79me3:361576_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49718/E-GEOD-49718.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49718/ E-GEOD-49717 seq-JA00001_HTZ1_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49717/E-GEOD-49717.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49717/ E-GEOD-49713 The gene expression profiling array of LncRNA between tumor tissues and paired non-tumor tissues in HBV-positive hapatocellular carcinoma transcription profiling by array Homo sapiens 10 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49713/E-GEOD-49713.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49713/E-GEOD-49713.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49713/ E-GEOD-49707 Sexual dimorphisms in zonal gene expression in mouse liver transcription profiling by array Mus musculus 12 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49707/E-GEOD-49707.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49707/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49707/ E-GEOD-49701 Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system transcription profiling by array Homo sapiens 3 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49701/E-GEOD-49701.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49701/E-GEOD-49701.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49701/ E-GEOD-49691 Dissolved and particulate copper exposure induce differing gene expression profiles in a deposit feeding amphipod transcription profiling by array Melita plumulosa 25 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49691/E-GEOD-49691.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49691/E-GEOD-49691.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49691/ E-GEOD-49690 Bacteria- and IMD Pathway-Independent Immune Defenses against Plasmodium falciparum in Anopheles gambiae transcription profiling by array Anopheles gambiae 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49690/E-GEOD-49690.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49690/E-GEOD-49690.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49690/ E-GEOD-49688 Gene expression data from Dstncorn1 mutant, rescued and WT cornea after genetic ablation of Srf from the corneal epithelium transcription profiling by array Mus musculus 9 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49688/E-GEOD-49688.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49688/E-GEOD-49688.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49688/ E-GEOD-49135 Axl mediates acquired resistance of head and neck cancer cells to the epidermal growth factor receptor inhibitor erlotinib transcription profiling by array Homo sapiens 6 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49135/E-GEOD-49135.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49135/ E-GEOD-48185 MicroRNAs differentially expressed in MUC1 overexpressing cells transcription profiling by array Homo sapiens 1 2013-08-10 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48185/E-GEOD-48185.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48185/ E-GEOD-47675 Gene expression profiling in the largemouth bass ovary following sub-chronic dietary exposures to the organochlorine pesticides p,p? DDE and methoxychlor transcription profiling by array Micropterus salmoides 16 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47675/E-GEOD-47675.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47675/E-GEOD-47675.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47675/ E-GEOD-45977 Global analysis of genes induced during sporulation of Clostridium difficile RNA-seq of coding RNA Clostridium difficile 630 18 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45977/E-GEOD-45977.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45977/ E-GEOD-45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation comparative genomic hybridization by array Macaca mulatta, Pan troglodytes, Pongo abelii 30 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45741/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45741/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45741/ E-GEOD-44566 Genome-wide analysis identifies a functional association of Tet1 and Polycomb PRC2 in mouse embryonic stem cells but not in differentiated tissues methylation profiling by high throughput sequencing, RNA-seq of coding RNA Mus musculus 8 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44566/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44566/ E-GEOD-43800 Genome-wide analysis of interleukin (IL) -6 and IL-11 responsive genes in murine gastric tumors transcription profiling by array Mus musculus 9 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43800/E-GEOD-43800.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43800/ E-GEOD-42866 Predicting HMX bioavailability using microarray gene expression data and regression modeling transcription profiling by array Eisenia fetida 120 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42866/E-GEOD-42866.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42866/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42866/ E-GEOD-41492 Sequential induction of effector function, tissue migration and cell death during polyclonal activation of regulatory T-cells transcription profiling by array Mus musculus 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41492/E-GEOD-41492.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41492/E-GEOD-41492.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41492/ E-GEOD-39780 Zygotic gene activatory network in zebrafish is globally controlled by Pou5f1 SoxB1 enhancers ChIP-seq Danio rerio 4 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39780/E-GEOD-39780.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39780/ E-GEOD-23598 Global gene expression profiles of MT knockout and wild-type mice in the condition of doxorubicin-induced cardiomyopathy transcription profiling by array Mus musculus 8 2013-08-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23598/E-GEOD-23598.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23598/E-GEOD-23598.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23598/ E-MTAB-1701 Transcription profiling by array of Aspergillus fumigatus Af293 exposed to antifungal supernatent of Lactobacillus plantarum 16 versus unexposed controls to study the effect of the supernatant on Aspergillus growth transcription profiling by array Aspergillus fumigatus 6 2013-08-09 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1701/E-MTAB-1701.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1701/ E-GEOD-49680 Expression analysis of LM8 osteosarcoma cells overexpressing human Prolyl Hydroxylase Domain Protein-4 (PHD4) and LM8 control cells transcription profiling by array Mus musculus 2 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49680/E-GEOD-49680.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49680/E-GEOD-49680.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49680/ E-GEOD-49679 Transcriptional profiling of Neurospora crassa conidia undergoing a time-course: ?pp-1 vs WT transcription profiling by array Neurospora crassa OR74A 35 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49679/E-GEOD-49679.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49679/E-GEOD-49679.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49679/ E-GEOD-49677 Chronic academic stress increases a group of microRNAs in peripheral blood transcription profiling by array Homo sapiens 12 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49677/E-GEOD-49677.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49677/E-GEOD-49677.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49677/ E-GEOD-49665 miRNA expression in AML and healthy controls transcription profiling by array Homo sapiens 65 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49665/E-GEOD-49665.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49665/E-GEOD-49665.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49665/ E-GEOD-49664 Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis transcription profiling by array Mus musculus 12 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49664/E-GEOD-49664.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49664/E-GEOD-49664.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49664/ E-GEOD-49663 Gene expression in the blood of Live Attenuated Rev-Independent Nef¯SIV infected Rhesus macaques during acute infection transcription profiling by array Macaca mulatta 6 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49663/E-GEOD-49663.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49663/E-GEOD-49663.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49663/ E-GEOD-49662 Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of 1-methylnicotinamide (MNA) and nicotinic acid (NA) RNA-seq of coding RNA Caenorhabditis elegans 9 2013-08-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49662/ E-GEOD-49661 Evaluation of quantitative miRNA gene expression platforms - custom microRNA GeneChip transcription profiling by array Homo sapiens 16 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49661/E-GEOD-49661.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49661/E-GEOD-49661.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49661/ E-GEOD-49657 The inducuction of UPR target genes in response to zinc depletion and serum starvation in HeLa cells. transcription profiling by array Homo sapiens 4 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49657/E-GEOD-49657.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49657/E-GEOD-49657.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49657/ E-GEOD-49637 Histone tail modification profiles of human renal tubule epithelial cells ChIP-seq Homo sapiens 7 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49637/E-GEOD-49637.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49637/ E-GEOD-49634 Ubiquitinated histone H2A mapping in Drosophila ML-DmBG3 cells ChIP-chip by tiling array Drosophila melanogaster 1 2013-08-09 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49634/E-GEOD-49634.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49634/ E-GEOD-49588 Expression data from pancreatic stellate cells and cancer cell line MiaPaca2 transcription profiling by array Homo sapiens 28 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49588/E-GEOD-49588.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49588/E-GEOD-49588.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49588/ E-GEOD-49586 Expression data from pancreatic cancer cell line MiaPaca2 transcription profiling by array Homo sapiens 10 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49586/E-GEOD-49586.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49586/E-GEOD-49586.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49586/ E-GEOD-49584 Expression data from pancreatic cancer cell line MiaPaca2 [control] transcription profiling by array Homo sapiens 9 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49584/E-GEOD-49584.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49584/E-GEOD-49584.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49584/ E-GEOD-49583 Expression data from pancreatic stellate cells transcription profiling by array Homo sapiens 9 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49583/E-GEOD-49583.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49583/E-GEOD-49583.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49583/ E-GEOD-49557 Methylation profiles of Chronic kidney disease methylation profiling by array Homo sapiens 26 2013-08-09 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49557/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49557/ E-GEOD-48848 KBM7 genetrap mutant cells stimulated with TNF-alpha and IFN-gamma transcription profiling by array Homo sapiens 8 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48848/E-GEOD-48848.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48848/E-GEOD-48848.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48848/ E-GEOD-48759 Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription other, ChIP-seq Mus musculus 139 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48759/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48759/ E-GEOD-46644 Charting a dynamic DNA methylation landscape of the human genome unknown experiment type, methylation profiling by high throughput sequencing Homo sapiens 8 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46644/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46644/ E-GEOD-46272 PINT lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb Repressive Complex 2 transcription profiling by array Homo sapiens, Mus musculus 34 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46272/E-GEOD-46272.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46272/E-GEOD-46272.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46272/ E-GEOD-46271 PINT lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb Repressive Complex 2 (tissue) transcription profiling by array Homo sapiens 23 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46271/E-GEOD-46271.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46271/E-GEOD-46271.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46271/ E-GEOD-46247 PINT lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb Repressive Complex 2 (MEF cells) transcription profiling by array Mus musculus 11 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46247/E-GEOD-46247.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46247/E-GEOD-46247.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46247/ E-GEOD-46128 Expression data in Arabidopsis wild type, ahg2-1 and ahg2-1ags1-1 mutants transcription profiling by tiling array Arabidopsis thaliana 18 2013-08-09 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46128/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46128/ E-GEOD-45463 Gene expression regulation by angiotensin II in late gestation fetal sheep transcription profiling by array Ovis aries 16 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45463/E-GEOD-45463.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45463/E-GEOD-45463.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45463/ E-GEOD-41603 Wapl controls higher-order chromatin structure in interphase chromosomes ChIP-seq, transcription profiling by array Mus musculus 24 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41603/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41603/E-GEOD-41603.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41603/ E-GEOD-41602 Wapl controls higher-order chromatin structure in interphase chromosomes (ChIP-Seq) ChIP-seq Mus musculus 8 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41602/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41602/ E-GEOD-41488 Identification of global copy number variations among diverse pig breeds by a CGH array comparative genomic hybridization by array Sus scrofa 12 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41488/E-GEOD-41488.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41488/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41488/ E-GEOD-41460 Wapl controls higher-order chromatin structure in interphase chromosomes (gene expression) transcription profiling by array Mus musculus 16 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41460/E-GEOD-41460.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41460/E-GEOD-41460.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41460/ E-GEOD-40368 Sphingosine-1-phosphate phosphatase 1 regulates keratinocyte differentiation and epidermal homeostasis transcription profiling by array Mus musculus 10 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40368/E-GEOD-40368.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40368/E-GEOD-40368.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40368/ E-GEOD-39817 Identification of de-differentiation and re-development phases during post-pneumonectomy lung growth. transcription profiling by array Mus musculus 21 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39817/E-GEOD-39817.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39817/E-GEOD-39817.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39817/ E-GEOD-23698 Expression data of SW480 cells with TFAP2E overexpression and without TFAP2E (empty vector control) transcription profiling by array Homo sapiens 2 2013-08-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23698/E-GEOD-23698.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23698/E-GEOD-23698.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23698/ E-MTAB-1620 Transcription profiling by array of adult fly guts to assess the transcriptome transcription profiling by array Drosophila melanogaster 24 2013-08-08 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1620/E-MTAB-1620.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1620/ E-MTAB-1172 DNA-seq of non-BRCA1/2 breast cancer patients to identify putative founder mutations DNA-seq Homo sapiens 36 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1172/E-MTAB-1172.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1172/ E-MTAB-897 Transcription profiling by array of mouse 6133 megakaryoblastic leukemia cells infected with retrovirus encoding Ikaros or a dominant-negative Ikaros isoform transcription profiling by array Mus musculus 8 2013-08-08 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-897/E-MTAB-897.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-897/ E-GEOD-49639 Cycles in spatial and temporal chromosomal organization driven by the circadian clock other, transcription profiling by array Mus musculus 27 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49639/E-GEOD-49639.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49639/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49639/ E-GEOD-49638 Circadian gene expression from wild type MEFs transcription profiling by array Mus musculus 18 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49638/E-GEOD-49638.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49638/E-GEOD-49638.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49638/ E-GEOD-49626 Study of the differentially-expressed genes induced by the expession of two viral glycoproteins in muscle cells of adult zebrafish transcription profiling by array Danio rerio 12 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49626/E-GEOD-49626.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49626/E-GEOD-49626.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49626/ E-GEOD-49616 Gestational high salt stressed new born BdkrB2 knockout collecting duct cells vs BdkrB2 wild type collecting duct cells transcription profiling by array Mus musculus 6 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49616/E-GEOD-49616.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49616/E-GEOD-49616.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49616/ E-GEOD-49603 Virus-Induced Airway Disease in Mice (C57BL/6J, d49) transcription profiling by array Mus musculus 12 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49603/E-GEOD-49603.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49603/ E-GEOD-49582 Chromosome conformation capture-on-chip of dexamethasone synchronized cells at several circadian times other Mus musculus 9 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49582/E-GEOD-49582.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49582/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49582/ E-GEOD-49524 Differential expression profiles of human primary endothelial cells (HUVECs) from umbilical cords of Gestational Diabetic mothers transcription profiling by array Homo sapiens 6 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49524/E-GEOD-49524.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49524/E-GEOD-49524.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49524/ E-GEOD-48610 Measuring cell-type specific differential methylation in human brain tissue methylation profiling by array Homo sapiens 91 2013-08-08 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48610/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48610/ E-GEOD-48609 Bone marrow-derived macrophages express distinct transcriptional programs when activated by LPS, IFN-gamma and PAO. transcription profiling by array Mus musculus 12 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48609/E-GEOD-48609.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48609/E-GEOD-48609.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48609/ E-GEOD-48452 Human liver biopsy of different phases from control to NASH transcription profiling by array Homo sapiens 73 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48452/E-GEOD-48452.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48452/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48452/ E-GEOD-48372 The PR/SET domain Zinc finger protein Prdm4 regulates gene expression in ES cells but plays a non-essential role in the developing mouse embryo. ChIP-seq Mus musculus 8 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48372/E-GEOD-48372.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48372/ E-GEOD-48325 DNA methylation analysis in non-alcoholic fatty liver disease suggests distinct disease-specific and remodeling signatures after bariatric surgery methylation profiling by array Homo sapiens 85 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48325/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48325/ E-GEOD-48268 Chronic lymphocytic leukemia cells are activated and proliferate in response to specific Th cells transcription profiling by array Homo sapiens 12 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48268/E-GEOD-48268.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48268/ E-GEOD-47938 Multiple roles for LEC in initiation and elongation phases of snRNA gene transcription ChIP-seq, RNA-seq of coding RNA Drosophila melanogaster, Homo sapiens 28 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47938/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47938/ E-GEOD-46308 Expression analysis of Prdm4 mutant and overexpressing mouse embryonic stem cells transcription profiling by array Mus musculus 16 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46308/E-GEOD-46308.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46308/ E-GEOD-46202 Coordination of engineered factors with TET1/2 promotes early stage epigenetic modification during somatic cell reprogramming methylation profiling by high throughput sequencing Mus musculus 8 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46202/E-GEOD-46202.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46202/ E-GEOD-45971 Streptococcus pneumoniae D39 spxB- mutant vs. D39 wild-type transcription profiling by array Streptococcus pneumoniae D39 4 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45971/E-GEOD-45971.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45971/E-GEOD-45971.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45971/ E-GEOD-44874 Expression data from 22 human myotubes transcription profiling by array Homo sapiens 22 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44874/E-GEOD-44874.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44874/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44874/ E-GEOD-41900 Phosphate-independent small RNA sequencing of WT and mir-249 mutant C. elegans RNA-seq of non coding RNA Caenorhabditis elegans 2 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41900/E-GEOD-41900.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41900/ E-GEOD-41654 Identification and characterization of microRNAs in pepper from 10 tissue samples by high-throughput sequencing RNA-seq of non coding RNA Capsicum annuum 10 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41654/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41654/ E-GEOD-40010 Gene expression patterns and life cycle responses of toxicant exposed chironomids transcription profiling by array Chironomus riparius 138 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40010/E-GEOD-40010.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40010/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40010/ E-GEOD-39991 Knockdown of Hnrnpa0, a del(5q) Gene, Alters Myeloid Cell Fate in Murine Cells through Regulation of AU-rich Transcripts transcription profiling by array Homo sapiens 38 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39991/E-GEOD-39991.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39991/E-GEOD-39991.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39991/ E-GEOD-24149 MicroRNAs as potential biomarkers for APE other Homo sapiens 40 2013-08-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24149/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24149/ E-TABM-1221 Transcription profiling by array of yeast deletion mutants transcription profiling by array Saccharomyces cerevisiae 34 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-TABM-1221/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-TABM-1221/E-TABM-1221.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-1221/ E-TABM-1104 Transcription profiling by array of M. musculus En1 -/- mouse midbrain E13.5 against pooled control +/+ littermates to investigate the specification of the mesodiencephalic dopaminergic system transcription profiling by array Mus musculus 4 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-TABM-1104/E-TABM-1104.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-TABM-1104/E-TABM-1104.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-1104/ E-MTAB-1783 MicroRNA profiling by array of non-differentiated and differentiated 3T3-L1 cells to study the role of microRNAs in adipocyte differentiation microRNA profiling by array Mus musculus 2 2013-08-07 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1783/E-MTAB-1783.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1783/ E-MEXP-3947 MicroRNA expression as risk biomarkers of breast cancer metastasis in a retrospective case cohort study transcription profiling by array Homo sapiens 64 2013-08-07 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3947/E-MEXP-3947.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3947/ E-GEOD-49602 Next-generation sequencing of cancers of unknown primary (Affymetrix GenomeWideSNP data) genotyping by array, comparative genomic hybridization by array Homo sapiens 7 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49602/E-GEOD-49602.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49602/E-GEOD-49602.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49602/ E-GEOD-49587 Developmental arrest of Drosophila survival motor neuron (Smn) mutants accounts for differences in expression of minor intron-containing genes unknown experiment type, RNA-seq of coding RNA Drosophila melanogaster 4 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49587/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49587/ E-GEOD-49571 Long-term exposure to low-concentrations of Cr(VI) induce DNA damage and disrupt the transcriptional response to benzo[a]pyrene RNA-seq of coding RNA Mus musculus 20 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49571/ E-GEOD-49569 Plasticity of the ripening process among berry classes transcription profiling by array Vitis vinifera 63 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49569/E-GEOD-49569.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49569/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49569/ E-GEOD-49566 Analyses of a deactivation genetic variation in Ha-Ras proto oncogene identified in a patient wit premature aging and insulin resistance transcription profiling by array Homo sapiens 9 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49566/E-GEOD-49566.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49566/E-GEOD-49566.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49566/ E-GEOD-49027 RNA-sequencing of Nedd4+/+ and Nedd4-/- mouse splenic B cells RNA-seq of coding RNA Mus musculus 2 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49027/E-GEOD-49027.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49027/ E-GEOD-48974 RNA-Seq of eye tissues from C57BL/6J background mice at 1.5 h and 9.0 h after light onset RNA-seq of coding RNA Mus musculus 6 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48974/E-GEOD-48974.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48974/ E-GEOD-48309 Global small RNA analysis in fast-growing Arabidposis thaliana with elevated level of ATP and sugars RNA-seq of non coding RNA Arabidopsis thaliana 8 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48309/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48309/ E-GEOD-47201 H. salinarum TrmB dynamics other Halobacterium sp. NRC-1 48 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47201/E-GEOD-47201.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47201/ E-GEOD-46129 Transcriptome analysis of Brg1 deficient small intestinal epithelium in the context of normal and aberrant Wnt signalling transcription profiling by array Mus musculus 15 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46129/E-GEOD-46129.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46129/ E-GEOD-45832 KB001-Gene expression profiling of histiocytic sarcomas in a canine model: the predisposed Flatcoated retriever dog transcription profiling by array Canis lupus familiaris 38 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45832/E-GEOD-45832.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45832/E-GEOD-45832.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45832/ E-GEOD-45764 Effect of influenza vaccination on PBMC and B cell gene expression profiles in healthy humans RNA-seq of coding RNA Homo sapiens 110 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45764/ E-GEOD-45735 Changes in PBMC gene expression profiles after influenza vaccination in healthy human subjects RNA-seq of coding RNA Homo sapiens 55 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45735/ E-GEOD-45734 Changes in gene expression profiles of circulating B cells after influenza vaccination in healthy human subjects RNA-seq of coding RNA Homo sapiens 55 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45734/ E-GEOD-43577 Transcriptional analysis of giant cells induced by root knot nematodes in rice RNA-seq of coding RNA Oryza sativa Japonica Group 8 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43577/ E-GEOD-42801 SAM domain polymerization links subnuclear clustering of PRC1 to silencing (Ring1B ChIP-Seq) ChIP-seq Mus musculus 2 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42801/E-GEOD-42801.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42801/ E-GEOD-41718 The ShcA PTB Domain Functions as a Biological Sensor of Phospho-tyrosine Signaling During Breast Cancer Progression transcription profiling by array Mus musculus 8 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41718/E-GEOD-41718.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41718/E-GEOD-41718.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41718/ E-GEOD-39825 A mutation in the c-Fos gene associated with congenital generalized lipodystrophy transcription profiling by array Homo sapiens 10 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39825/E-GEOD-39825.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39825/E-GEOD-39825.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39825/ E-GEOD-35645 Comparison of gene expression profiles of p45-/- primary megakaryocytes and WT primary megakaryocytes transcription profiling by array Mus musculus 6 2013-08-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35645/E-GEOD-35645.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35645/E-GEOD-35645.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35645/ E-ERAD-178 Bisulfite-seq of mouse embryonic stem cells methylation profiling by high throughput sequencing Mus musculus 6 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-178/ E-ERAD-169 RNA-seq of the olfactory system of newborn mice RNA-seq of coding RNA Mus musculus 12 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-169/ E-ERAD-74 RNA-seq of patients with primordial dwarfism. EGA study. RNA-seq of coding RNA Homo sapiens 288 2013-08-07 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-74/ E-MTAB-1699 Transcription profiling by array of NCI-H460 cells grown as spheres or in adherent conditions transcription profiling by array Homo sapiens 17 2013-08-06 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1699/E-MTAB-1699.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1699/ E-MTAB-1238 Transcription profiling by array of lymphoblastoid cell lines (LCLs) from six DS and six euploid individuals to investigate differential gene expression and pathway deregulation associated with trisomy 21 transcription profiling by array Homo sapiens 12 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1238/E-MTAB-1238.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1238/E-MTAB-1238.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1238/ E-MEXP-3783 Transcription profiling by array of five isolated size matched populations of preantral follicles from normal human ovaries to evaluate the expression of TGF-beta superfamily growth factors, their receptors and downstream SMAD signalling molecules during early human folliculogenesis transcription profiling by array Homo sapiens 17 2013-08-06 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3783/E-MEXP-3783.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3783/ E-GEOD-49565 Comparing the transcriptome of SP cells with that of non-SP cells in rainbow trout transcription profiling by array Oncorhynchus mykiss 18 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49565/E-GEOD-49565.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49565/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49565/ E-GEOD-49563 Comparison of gene expression in wild type Drosophila testes with various meiotic arrest mutants (comr and can) transcription profiling by array Drosophila melanogaster 9 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49563/E-GEOD-49563.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49563/E-GEOD-49563.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49563/ E-GEOD-49561 Cool-responsive change in the rice anther transcriptome transcription profiling by array Oryza sativa 66 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49561/E-GEOD-49561.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49561/E-GEOD-49561.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49561/ E-GEOD-49552 Transcriptomic response to long time ethanol production in the cyanobacterium Synechocystis sp. PCC6803 transcription profiling by array Synechocystis sp. PCC 6803 16 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49552/E-GEOD-49552.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49552/E-GEOD-49552.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49552/ E-GEOD-49543 Novel approach to select genes from RMA normalized microarray data using functional hearing tests in aging mice. transcription profiling by array Mus musculus 41 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49543/E-GEOD-49543.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49543/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49543/ E-GEOD-49522 Expression changes in IC GABA receptors in the auditory midbrain of young adult and aging presbycusis mice. transcription profiling by array Mus musculus 39 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49522/E-GEOD-49522.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49522/E-GEOD-49522.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49522/ E-GEOD-48675 Comparison of gene expression profiles between N2 wild-type C. elegans and an nhr-8(hd117) mutant transcription profiling by array Caenorhabditis elegans 14 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48675/E-GEOD-48675.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48675/E-GEOD-48675.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48675/ E-GEOD-48472 Identification and systematic annotation of tissue-specific differentially methylated regions using Illumina 450k chips methylation profiling by array Homo sapiens 56 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48472/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48472/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48472/ E-GEOD-48112 BET Bromodomains Mediate Transcriptional Pause Release in Heart Failure ChIP-seq, transcription profiling by array Mus musculus, Rattus norvegicus 60 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48112/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48112/E-GEOD-48112.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48112/ E-GEOD-48111 BET Bromodomains Mediate Transcriptional Pause Release in Heart Failure [NRVM Expression] transcription profiling by array Rattus norvegicus 20 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48111/E-GEOD-48111.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48111/E-GEOD-48111.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48111/ E-GEOD-48110 BET Bromodomains Mediate Transcriptional Pause Release in Heart Failure [Mouse Heart Expression] transcription profiling by array Mus musculus 27 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48110/E-GEOD-48110.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48110/E-GEOD-48110.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48110/ E-GEOD-47920 Expression data from T lymphocytes derived from T-iPS and peripheral blood transcription profiling by array Homo sapiens 11 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47920/E-GEOD-47920.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47920/E-GEOD-47920.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47920/ E-GEOD-47429 Kaplan2013: High-Resolution, Quantitative Genetic Analysis of RNA Polymerase II transcription profiling by array Saccharomyces cerevisiae 57 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47429/E-GEOD-47429.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47429/E-GEOD-47429.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47429/ E-GEOD-47185 In silico nano-dissection: defining cell type specificity at transcriptional level in human disease transcription profiling by array Homo sapiens 229 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47185/E-GEOD-47185.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47185/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47185/ E-GEOD-47184 In silico nano-dissection: defining cell type specificity at transcriptional level in human disease (tubulointerstitium) transcription profiling by array Homo sapiens 107 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47184/E-GEOD-47184.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47184/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47184/ E-GEOD-47183 In silico nano-dissection: defining cell type specificity at transcriptional level in human disease (glomeruli) transcription profiling by array Homo sapiens 122 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47183/E-GEOD-47183.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47183/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47183/ E-GEOD-46668 BET Bromodomains Mediate Transcriptional Pause Release in Heart Failure [ChIP-Seq] ChIP-seq Mus musculus 13 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46668/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46668/ E-GEOD-45929 FGFR2 Signaling Underlies p63 Oncogenic Function in Squamous Cell Carcinoma transcription profiling by array Mus musculus 6 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45929/E-GEOD-45929.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45929/ E-GEOD-45258 RNA-seq analysis of HT-29, MCF10A, and MDA-MB-436 cells RNA-seq of coding RNA Homo sapiens 6 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45258/E-GEOD-45258.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45258/ E-GEOD-45195 Exon arrays from HT-29, MCF10A, and MDA-MB-436 cells transcription profiling by array Homo sapiens 3 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45195/E-GEOD-45195.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45195/E-GEOD-45195.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45195/ E-GEOD-44096 Deletion of DMD exon 52 in the pig results in fulminant muscular dystrophy transcription profiling by array Sus scrofa 13 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44096/E-GEOD-44096.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44096/E-GEOD-44096.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44096/ E-GEOD-43458 Gene expression profiling of lung adenocarcinomas and normal lung tissue transcription profiling by array Homo sapiens 110 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43458/E-GEOD-43458.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43458/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43458/ E-GEOD-42144 Global DNA Hypermethylation in Down Syndrome Placenta methylation profiling by high throughput sequencing, RNA-seq of coding RNA Homo sapiens 26 2013-08-06 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42144/ E-GEOD-42142 Global DNA Hypermethylation in Down Syndrome Placenta [RNA-Seq] RNA-seq of coding RNA Homo sapiens 9 2013-08-06 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42142/ E-GEOD-42074 Global DNA Hypermethylation in Down Syndrome Placenta [Bisulfite-Seq] methylation profiling by high throughput sequencing Homo sapiens 17 2013-08-06 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42074/ E-GEOD-42022 Differential gene expression profiles between Parp-2-/- and wild-type hematopoietic stem/progenitors cell at basal and in response to 5 Gy gamma Irradiation (2.5 hours post-irradiation) transcription profiling by array Mus musculus 16 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42022/E-GEOD-42022.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42022/E-GEOD-42022.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42022/ E-GEOD-39402 Gene expression profile of epithelial ovarian tumor tissue of a transgenic mouse model compared to normal mouse ovary tissue transcription profiling by array Mus musculus 4 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39402/E-GEOD-39402.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39402/E-GEOD-39402.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39402/ E-GEOD-38516 HT-29 cells treated with IFN-? transcription profiling by array Homo sapiens 3 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38516/E-GEOD-38516.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38516/E-GEOD-38516.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38516/ E-GEOD-35580 Cell type-specific auxin responses in the Arabidopsis thaliana root transcription profiling by array Arabidopsis thaliana 30 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35580/E-GEOD-35580.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35580/E-GEOD-35580.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35580/ E-GEOD-33929 Slx5_Slx8_Genome_Stability transcription profiling by array Saccharomyces cerevisiae 34 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33929/E-GEOD-33929.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33929/E-GEOD-33929.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33929/ E-GEOD-29991 Messenger RNA is a functional component of a chromatin insulator complex RNA-seq of coding RNA Drosophila melanogaster 31 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29991/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29991/ E-GEOD-16477 NOTCH3 is a master-regulator of motility in neuroblastoma and is essential for cell survival transcription profiling by array Homo sapiens 17 2013-08-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16477/E-GEOD-16477.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16477/E-GEOD-16477.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16477/ E-MTAB-1747 Transcription profiling by array of human primary hepatocytes exposed to different concentrations of hepatotoxin Chlorpromazinea for 1, 3 or 14 days to study gene expression changes during drug-induced liver injury transcription profiling by array Homo sapiens 45 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1747/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1747/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1747/ E-MEXP-3701 Transcription profiling by array of NaCl treated Oryza sativa wild type and OsTZF1-OX plants transcription profiling by array Oryza sativa 4 2013-08-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3701/E-MEXP-3701.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3701/ E-MEXP-3700 Transcription profiling by array of untreated Oryza sativa wild type and OsTZF1-OX plants transcription profiling by array Oryza sativa 4 2013-08-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3700/E-MEXP-3700.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3700/ E-GEOD-49120 Menin-regulated genes in bone marrow B-cell progenitors transcription profiling by array Mus musculus 8 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49120/E-GEOD-49120.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49120/E-GEOD-49120.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49120/ E-GEOD-47885 Deep sequencing of the murine Igh repertoire reveals complex regulation of non-random V gene rearrangement frequencies (RNA-seq) RNA-seq of coding RNA Mus musculus 2 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47885/E-GEOD-47885.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47885/ E-GEOD-47766 Deep sequencing of the murine Igh repertoire reveals complex regulation of non-random V gene rearrangement frequencies ChIP-seq Mus musculus 12 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47766/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47766/ E-GEOD-47681 trkB.T1 WT versus trkB.T1 KO expression data following spinal cord injury (SCI) transcription profiling by array Mus musculus 34 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47681/E-GEOD-47681.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47681/E-GEOD-47681.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47681/ E-GEOD-47587 Expression profile of cortices, hippocampi and brainstems of Nrf2 knockout mice under unstressed conditions transcription profiling by array Mus musculus 18 2013-08-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47587/E-GEOD-47587.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47587/ E-GEOD-47575 Regulation of Gene Expression by Connective Tissue Growth Factor (CTGF) in Mesenchymal Stromal Cells (MSCs) transcription profiling by array Homo sapiens 2 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47575/E-GEOD-47575.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47575/E-GEOD-47575.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47575/ E-GEOD-47494 A pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics ChIP-seq, RNA-seq of coding RNA Mus musculus 6 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47494/E-GEOD-47494.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47494/ E-GEOD-46922 Differences in gene expression and cytokines levels between newly diagnosed and chronic pediatric immune thrombocytopenia (ITP) transcription profiling by array Homo sapiens 13 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46922/E-GEOD-46922.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46922/E-GEOD-46922.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46922/ E-GEOD-46508 Small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 12 2013-08-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46508/ E-GEOD-46490 High-throughput RNA sequencing of human preovulatory cumulus and mural granulosa cells (mRNA) RNA-seq of coding RNA Homo sapiens 6 2013-08-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46490/ E-GEOD-46489 Small RNA sequencing of human preovulatory cumulus and mural granulosa cells RNA-seq of non coding RNA Homo sapiens 6 2013-08-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46489/ E-GEOD-45496 Comparison of gene expression of miltefosine responsive Vs miltefosine unresponsive Leishmania donovani promastigotes transcription profiling by array Leishmania donovani 4 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45496/E-GEOD-45496.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45496/E-GEOD-45496.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45496/ E-GEOD-44126 Expression data from Human CD40L+ Tcells transcription profiling by array Homo sapiens 15 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44126/E-GEOD-44126.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44126/E-GEOD-44126.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44126/ E-GEOD-43211 Differentiated vs. undifferentiated promyelocytic cell lines (HL-60 and KG-1) and Neutrophiles transcription profiling by SAGE Homo sapiens 5 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43211/E-GEOD-43211.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43211/ E-GEOD-43079 Cigarette Smoking Induces Small Airway Epithelial Epigenetic Changes with Corresponding Modulation of Gene Expression transcription profiling by array, methylation profiling by array Homo sapiens 75 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43079/E-GEOD-43079.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43079/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43079/ E-GEOD-41497 Development of Helicobacter pylori microarrays to test pathogenicity of clinical isolates transcription profiling by array Homo sapiens 18 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41497/E-GEOD-41497.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41497/E-GEOD-41497.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41497/ E-GEOD-41127 Gene expression profile in the spleen of mice fed Lactobacillus brevis KB290 transcription profiling by array Mus musculus 47 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41127/E-GEOD-41127.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41127/E-GEOD-41127.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41127/ E-GEOD-40839 Expression data from fibroblasts cultured from normal and fibrotic human lung tissue transcription profiling by array Homo sapiens 21 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40839/E-GEOD-40839.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40839/E-GEOD-40839.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40839/ E-GEOD-40681 Comparative transcriptional analysis of Acinetobacter baumannii strain ATCC 17978 and strain 17978hm transcription profiling by array Acinetobacter baumannii 4 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40681/E-GEOD-40681.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40681/E-GEOD-40681.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40681/ E-GEOD-29282 A biochemical basis for toggling enhancers from the active to poised state in B cells ChIP-seq, RNA-seq of coding RNA Homo sapiens 46 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29282/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29282/ E-GEOD-27212 Gene expression in spinal cord neurons grown on polyornithine or on carbon nanotube (CNT)-based substrates transcription profiling by array Rattus norvegicus 6 2013-08-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27212/E-GEOD-27212.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27212/E-GEOD-27212.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27212/ E-GEOD-47502 Top3? is an RNA topoisomerase that works with Fragile X syndrome protein to promote synapse formation RNA-seq of coding RNA Homo sapiens 1 2013-08-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47502/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47502/ E-GEOD-46855 Induction of the mouse germ cell fate by transcription factors in vitro transcription profiling by array Mus musculus 52 2013-08-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46855/E-GEOD-46855.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46855/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46855/ E-GEOD-46854 Induction of the mouse germ cell fate by transcription factors in vitro [exp2] transcription profiling by array Mus musculus 20 2013-08-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46854/E-GEOD-46854.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46854/E-GEOD-46854.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46854/ E-GEOD-43775 Induction of the mouse germ cell fate by transcription factors in vitro [exp1] transcription profiling by array Mus musculus 32 2013-08-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43775/E-GEOD-43775.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43775/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43775/ E-GEOD-43522 Chromothripsis in AML genotyping by array, comparative genomic hybridization by array Homo sapiens 2 2013-08-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43522/E-GEOD-43522.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43522/ E-GEOD-31876 The differentially expressed genes in SRSF3 siRNA-treated HCT116 cells transcription profiling by array Homo sapiens 2 2013-08-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31876/E-GEOD-31876.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31876/E-GEOD-31876.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31876/ E-GEOD-49530 Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and mutants transcription profiling by array Desulfovibrio alaskensis G20 30 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49530/E-GEOD-49530.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49530/E-GEOD-49530.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49530/ E-GEOD-49529 Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and regulator proteins mutants transcription profiling by array Desulfovibrio alaskensis G20 12 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49529/E-GEOD-49529.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49529/E-GEOD-49529.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49529/ E-GEOD-49528 Comparative transcriptional analysis of Desulfovibrio alaskensis G20, a choline utilization regulator and LysX transcription profiling by array Desulfovibrio alaskensis G20 10 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49528/E-GEOD-49528.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49528/E-GEOD-49528.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49528/ E-GEOD-49527 Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and mutants in regulator proteins grown in minimal media transcription profiling by array Desulfovibrio alaskensis G20 8 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49527/E-GEOD-49527.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49527/E-GEOD-49527.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49527/ E-GEOD-49521 Genomic Interaction Profiles in Breast Cancer Reveal Altered Chromatin Architecture other Homo sapiens 3 2013-08-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49521/ E-GEOD-49515 Expression profiling of PBMC from patients with hepatocellular carcinoma transcription profiling by array Homo sapiens 26 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49515/E-GEOD-49515.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49515/E-GEOD-49515.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49515/ E-GEOD-49513 Epigenetic regulation of sex determination by the histone demethylase Jmjd1a transcription profiling by array Mus musculus 12 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49513/E-GEOD-49513.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49513/E-GEOD-49513.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49513/ E-GEOD-49510 Global gene expression pattern difference between the high density and the regular density cultured rat bone marrow cells transcription profiling by array Rattus norvegicus 4 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49510/E-GEOD-49510.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49510/ E-GEOD-49506 KSHV vIRF4-mediated cellular genes alteration transcription profiling by array Homo sapiens 4 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49506/E-GEOD-49506.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49506/E-GEOD-49506.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49506/ E-GEOD-49484 Identification of transcript starts in Desulfovibrio alaskensis G20 RNA-seq of coding RNA Desulfovibrio alaskensis G20 1 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49484/E-GEOD-49484.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49484/ E-GEOD-28134 Coordination in the transcriptome and proteome of the diatom Thalassiosira pseudonana reveals a diverse phosphorus stress response transcription profiling by SAGE Thalassiosira pseudonana CCMP1335 2 2013-08-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28134/E-GEOD-28134.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28134/ E-MTAB-1298 Methylation profiling by array of human oral squamous cell carcinoma samples against matched normal oral mucosa samples from the same cohort of patients methylation profiling by array Homo sapiens 88 2013-08-02 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1298/E-MTAB-1298.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1298/ E-MEXP-3948 High-resolution array CGH profiling identifies Na-K transporting ATPase interacting 2 - NKAIN2- as a predisposing candidate gene in neuroblastoma comparative genomic hybridization by array Homo sapiens 5 2013-08-02 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3948/E-MEXP-3948.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3948/ E-GEOD-49502 RPLII_ab5408.Clone_8.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49502/E-GEOD-49502.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49502/ E-GEOD-49501 RLPII_phospho5_ab5131.Clone_8.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49501/E-GEOD-49501.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49501/ E-GEOD-49500 RLPII_phospho5_ab5131.Kc.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49500/E-GEOD-49500.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49500/ E-GEOD-49499 RLPII_phospho2_ab5095.Kc.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49499/E-GEOD-49499.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49499/ E-GEOD-49498 H4K8ac.L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49498/E-GEOD-49498.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49498/ E-GEOD-49497 H4K16ac(M).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49497/E-GEOD-49497.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49497/ E-GEOD-49496 Su(var)3-9-Q2598.L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49496/E-GEOD-49496.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49496/ E-GEOD-49495 HP1c (MO 462).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49495/E-GEOD-49495.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49495/ E-GEOD-49494 H3K79me3 (Abcam ab2621 lot 1).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49494/E-GEOD-49494.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49494/ E-GEOD-49493 H3K79me2 (Abcam ab3594 lot 1).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49493/E-GEOD-49493.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49493/ E-GEOD-49492 H3K79me1 (Abcam lot 1).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49492/E-GEOD-49492.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49492/ E-GEOD-49491 H3K4me3 (ab8580 lot 2).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49491/E-GEOD-49491.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49491/ E-GEOD-49490 H3K27me3 (Abcam lot3).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49490/E-GEOD-49490.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49490/ E-GEOD-49489 H3K27me1 (Millipore).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49489/E-GEOD-49489.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49489/ E-GEOD-49488 H3K27ac (Active Motif).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49488/E-GEOD-49488.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49488/ E-GEOD-49487 H2B-ubiq (NRO3).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49487/E-GEOD-49487.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49487/ E-GEOD-49474 Wild type E.coli SE15 vs. LuxS mutant E.coli SE15 transcription profiling by array Escherichia coli SE15 1 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49474/E-GEOD-49474.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49474/E-GEOD-49474.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49474/ E-GEOD-49470 Three human glioma stem cell lines sorted for CD133 and one human neural precursor line sorted for CD133 to identify tumor-specific miRNA dysregulation. transcription profiling by array Homo sapiens 6 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49470/E-GEOD-49470.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49470/E-GEOD-49470.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49470/ E-GEOD-49467 Gender bias in autoimmunity is influenced by microbiota transcription profiling by array Mus musculus 12 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49467/E-GEOD-49467.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49467/ E-GEOD-49466 Effects of PP2Ac over-expression on mouse naïve CD4 T cell gene profile upon activation transcription profiling by array Mus musculus 12 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49466/E-GEOD-49466.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49466/E-GEOD-49466.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49466/ E-GEOD-49447 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain comparative genomic hybridization by array Homo sapiens 31 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49447/E-GEOD-49447.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49447/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49447/ E-GEOD-49446 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain (part 2) comparative genomic hybridization by array Homo sapiens 9 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49446/E-GEOD-49446.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49446/E-GEOD-49446.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49446/ E-GEOD-49440 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain (part 1) comparative genomic hybridization by array Homo sapiens 22 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49440/E-GEOD-49440.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49440/E-GEOD-49440.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49440/ E-GEOD-49438 Characterization of Transcription Factor Networks Involved in Umbilical Cord Blood CD34+ Stem Cells-Derived Erythropoiesis transcription profiling by array Homo sapiens 12 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49438/E-GEOD-49438.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49438/ E-GEOD-47973 Expression data of LNCaP and MDA PCa 2b cells in absence or presence of IL6 transcription profiling by array Homo sapiens 24 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47973/E-GEOD-47973.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47973/E-GEOD-47973.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47973/ E-GEOD-47615 The metabolic and regulatory networks of carbohydrate utilization of Thermotoga maritima transcription profiling by tiling array Thermotoga maritima MSB8 19 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47615/E-GEOD-47615.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47615/E-GEOD-47615.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47615/ E-GEOD-46741 Arabidopsis circadian regulatory networks transcription profiling by array, RNA-seq of coding RNA Arabidopsis thaliana 54 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46741/E-GEOD-46741.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46741/E-GEOD-46741.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46741/ E-GEOD-46621 Expression data from Arabidopsis thaliana seedlings transcription profiling by array Arabidopsis thaliana 12 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46621/E-GEOD-46621.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46621/E-GEOD-46621.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46621/ E-GEOD-46171 Asthmatics with exacerbation during acute respiratory illness exhibit unique transcriptional signatures. transcription profiling by array Homo sapiens 91 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46171/E-GEOD-46171.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46171/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46171/ E-GEOD-45887 The gene expression analysis of paracrine/autocrine factors in patients with spermatogenetic failure compared to normal spermatogenesis transcription profiling by array Homo sapiens 20 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45887/E-GEOD-45887.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45887/E-GEOD-45887.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45887/ E-GEOD-44460 Induction of IL-17+ T-cells by HIV-Tat protein is mediated via Vascular Endothelial Growth Factor Receptor-2 transcription profiling by array Homo sapiens 12 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44460/E-GEOD-44460.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44460/E-GEOD-44460.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44460/ E-GEOD-43865 Genome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome RNA-seq of coding RNA Arabidopsis thaliana 42 2013-08-02 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43865/ E-GEOD-43592 MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS) transcription profiling by array Homo sapiens 40 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43592/E-GEOD-43592.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43592/E-GEOD-43592.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43592/ E-GEOD-43591 MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS) mRNA transcription profiling by array Homo sapiens 20 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43591/E-GEOD-43591.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43591/E-GEOD-43591.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43591/ E-GEOD-43590 MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS) miRNA transcription profiling by array Homo sapiens 20 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43590/E-GEOD-43590.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43590/E-GEOD-43590.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43590/ E-GEOD-42328 Gene Expression Profile of 53 human T-ALL samples collected in human clinical trial E2993 (Marks et al., 2009) transcription profiling by array Homo sapiens 53 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42328/E-GEOD-42328.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42328/ E-GEOD-42031 Comparison of gene expression profile of naive versus arsenic trioxide resistant acute promyelocytic leukemia cell line NB4 transcription profiling by array Homo sapiens 4 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42031/E-GEOD-42031.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42031/E-GEOD-42031.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42031/ E-GEOD-42030 Differential gene expression profile of newly diagnosed versus relapse acute promyelocytic leukemia transcription profiling by array Homo sapiens 16 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42030/E-GEOD-42030.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42030/E-GEOD-42030.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42030/ E-GEOD-41956 Transcriptome analysis of A661 leaves transcription profiling by array Zea mays 6 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41956/E-GEOD-41956.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41956/E-GEOD-41956.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41956/ E-GEOD-37483 Transcriptome analysis of Thermotoga maritima transcription profiling by tiling array, RNA-seq of coding RNA Thermotoga maritima MSB8 20 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37483/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37483/E-GEOD-37483.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37483/ E-GEOD-37461 Transcription start site analysis for Thermotoga maritima [RNA-seq] RNA-seq of coding RNA Thermotoga maritima MSB8 2 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37461/E-GEOD-37461.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37461/ E-GEOD-37391 Transcriptome analysis of Thermotoga maritima under multiple growth conditions [tiling array] transcription profiling by tiling array Thermotoga maritima MSB8 14 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37391/E-GEOD-37391.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37391/E-GEOD-37391.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37391/ E-GEOD-16641 Laughter specific genes and laughter sensitive genes transcription profiling by array Homo sapiens 7 2013-08-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16641/E-GEOD-16641.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16641/E-GEOD-16641.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16641/ E-MTAB-1796 Transcriptional profiling of LIF stimulation in mouse embryonic stem cells RNA-seq of coding RNA, RNA-seq of non coding RNA Mus musculus 12 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1796/ E-MTAB-1688 Transcription profiling by array of human pulmonary and circulating CD8 cells from chronic obstructive pulmonary disease (COPD) patients transcription profiling by array Homo sapiens 18 2013-08-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1688/E-MTAB-1688.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1688/ E-MTAB-1677 Transcription profiling by tiling array of Listeria monocytogenes EGD wild type, Listeria monocytogenes EGD-e wild-type and EGD-e PrfA* transcription profiling by tiling array Listeria monocytogenes EGD, Listeria monocytogenes EGD-e 9 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1677/E-MTAB-1677.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1677/E-MTAB-1677.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1677/ E-MTAB-1676 Transcription profiling by array of Listeria monocytogenes EGD wild type, Listeria monocytogenes EGD-e wild-type and EGD-e PrfA* transcription profiling by array Listeria monocytogenes EGD, Listeria monocytogenes EGD-e 9 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1676/E-MTAB-1676.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1676/E-MTAB-1676.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1676/ E-MTAB-1655 Transcription profiling by array of the potato (Solanum tuberosum L.) plant response to moderately elevated temperature transcription profiling by array Solanum tuberosum 36 2013-08-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1655/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1655/ E-MTAB-1648 ChIP-seq of E2f, Max, Myb and Myc in Drosophila melanogaster S2 cells to map their genome-wide binding sites ChIP-seq Drosophila melanogaster 26 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1648/ E-MTAB-1479 RNA-Seq of G. gallus mRNA-seq from cell line macrophages and embryonic fibroblasts RNA-seq of coding RNA Gallus gallus 2 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1479/ E-MTAB-949 Transcription profiling by array of breast cancer distant metastasis based on outcome over time and identification of pathway activities of late relapse transcription profiling by array Homo sapiens 28 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-949/E-MTAB-949.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-949/E-MTAB-949.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-949/ E-MEXP-3749 New target genes of MITF-induced microRNA-211 contribute to melanoma cell invasion transcription profiling by array Homo sapiens 4 2013-08-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3749/E-MEXP-3749.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3749/ E-GEOD-49468 EDL933 cultured in bovine small intestine content (BSIC) vs M9 minimal media transcription profiling by array Escherichia coli 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49468/E-GEOD-49468.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49468/E-GEOD-49468.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49468/ E-GEOD-49461 Development of gene expression signatures for LGR5hi and LGR5lo ISCs in response to gamma-irradiation transcription profiling by array Mus musculus 17 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49461/E-GEOD-49461.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49461/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49461/ E-GEOD-49451 Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8). ChIP-seq, transcription profiling by array Mus musculus 10 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49451/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49451/E-GEOD-49451.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49451/ E-GEOD-49445 ChIP-Seq of Klf4 in NMuMG normal murine mammary gland epithelial cells. ChIP-seq Mus musculus 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49445/E-GEOD-49445.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49445/ E-GEOD-49423 Acute Genome-Wide Effects of Rosiglitazone on PPAR? Transcriptional Networks in Adipocytes ChIP-seq Mus musculus 16 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49423/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49423/ E-GEOD-49422 Expression data from H1299 human non-small cell lung carcinoma cell lines stably expressing CHES1 compared with H1299 infected with an empty vector transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49422/E-GEOD-49422.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49422/E-GEOD-49422.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49422/ E-GEOD-49405 RMST associates with SOX2 to regulate neurogenesis ChIP-seq, transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49405/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49405/ E-GEOD-49404 RMST associates with SOX2 to regulate neurogenesis [ChIP-Seq] ChIP-seq Homo sapiens 3 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49404/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49404/ E-GEOD-49403 RMST associates with SOX2 to regulate neurogenesis [Illumina expression data] transcription profiling by array Homo sapiens 3 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49403/E-GEOD-49403.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49403/ E-GEOD-49399 DELLA targets in proliferating leaf tissue transcription profiling by array Arabidopsis thaliana 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49399/E-GEOD-49399.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49399/E-GEOD-49399.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49399/ E-GEOD-49394 Transcriptome comparison of wild type Azoarcus sp. strain BH72 grown under nitrogen fixation (experiment) with cells grown with combined nitrogen (ammonia) as nitrogen source transcription profiling by array Azoarcus sp. 3 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49394/E-GEOD-49394.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49394/E-GEOD-49394.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49394/ E-GEOD-49392 Gene expression data from HD mutant and wild type ST14A cells, differentiated for 24 hours and treated with vehicle (DMSO) or with 5µM MIND4 transcription profiling by array Rattus norvegicus 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49392/E-GEOD-49392.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49392/E-GEOD-49392.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49392/ E-GEOD-49390 Co-regulated gene expression by estrogen receptor-a and liver receptor homolog-1 is a feature of the estrogen response in breast cancer cells ChIP-seq Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49390/E-GEOD-49390.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49390/ E-GEOD-49389 Genome-wide analysis of the rat colon reveals site-specific differences in histone modifications and proto-oncogene expression ChIP-seq, RNA-seq of coding RNA Rattus norvegicus 7 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49389/E-GEOD-49389.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49389/ E-GEOD-49200 An oncogenic Kras expression signature identified by cross-species transcription profiling by array Mus musculus 50 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49200/E-GEOD-49200.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49200/E-GEOD-49200.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49200/ E-GEOD-49158 HDAC inhibitor kinetic rate constants correlate with cellular histone acetylation but not transcription and cell viability transcription profiling by array Homo sapiens 35 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49158/E-GEOD-49158.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49158/E-GEOD-49158.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49158/ E-GEOD-49145 Expression data from homozygous deletion of the Lgi1 gene in murine neural precursor-like cells transcription profiling by array Mus musculus 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49145/E-GEOD-49145.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49145/E-GEOD-49145.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49145/ E-GEOD-49034 Down regulation of qptgene in arabidopsis-Regulation of NAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferase. transcription profiling by array Arabidopsis thaliana 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49034/E-GEOD-49034.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49034/E-GEOD-49034.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49034/ E-GEOD-49014 Identification of NRSF/REST genomic binding sites in conditions of basal and increased SF-1 dosage in the H295R adrenocortical tumor cell line ChIP-seq Homo sapiens 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49014/E-GEOD-49014.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49014/ E-GEOD-48914 Gene expression arrays of cardiomyocyte ribosome-associated RNAs during zebrafish heart regeneration transcription profiling by array Danio rerio 9 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48914/E-GEOD-48914.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48914/E-GEOD-48914.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48914/ E-GEOD-48765 JMJD2A ChIP-chip from HEK293T cells ChIP-chip by tiling array Homo sapiens 14 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48765/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48765/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48765/ E-GEOD-48351 Affymetrix SNP6 copy number data on ovarian cancer cell lines comparative genomic hybridization by array Homo sapiens 10 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48351/E-GEOD-48351.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48351/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48351/ E-GEOD-48263 Genome wide mapping of effects of U6atac knockdown on pre-mRNA splicing RNA-seq of coding RNA Homo sapiens 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48263/E-GEOD-48263.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48263/ E-GEOD-48230 Transcription factors OVOL1 and OVOL2 induce the mesenchymal to epithelial transition in human cancer RNA-seq of coding RNA Homo sapiens 10 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48230/ E-GEOD-48164 Genome-wide mapping of CarD, RNAPs, and RNAPb on the Mycobacterium smegmatis genome using Chromatin Immunoprecipitation Sequencing ChIP-seq Mycobacterium smegmatis 7 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48164/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48164/ E-GEOD-47943 The effect of alcohol on the expression of miroRNAs in rat nucleus accumbens transcription profiling by array Rattus norvegicus 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47943/E-GEOD-47943.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47943/E-GEOD-47943.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47943/ E-GEOD-47936 Location of indigenous human HSCs reveals functional properties of HSCs that are dictated by anatomic and cellular architecture of bone marrow transcription profiling by array Homo sapiens, Mus musculus 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47936/E-GEOD-47936.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47936/E-GEOD-47936.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47936/ E-GEOD-47935 Location of indigenous human HSCs reveals functional properties of HSCs that are dictated by anatomic and cellular architecture of bone marrow II transcription profiling by array Mus musculus 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47935/E-GEOD-47935.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47935/E-GEOD-47935.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47935/ E-GEOD-47934 Location of indigenous human HSCs reveals functional properties of HSCs that are dictated by anatomic and cellular architecture of bone marrow I transcription profiling by array Homo sapiens 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47934/E-GEOD-47934.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47934/E-GEOD-47934.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47934/ E-GEOD-47886 Identification of sRNAs responsive to diazotrophic bacteria colonization in maize RNA-seq of non coding RNA Zea mays 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47886/E-GEOD-47886.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47886/ E-GEOD-47666 Convergent transcription induces dynamic DNA methylation at disiRNA loci RNA-seq of non coding RNA Neurospora crassa 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47666/E-GEOD-47666.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47666/ E-GEOD-47040 Expression data from prostate cancer cell lines C4-2B (docetaxel sensitive) and TaxR (docetaxel resistant) cells transcription profiling by array Homo sapiens 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47040/E-GEOD-47040.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47040/E-GEOD-47040.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47040/ E-GEOD-47006 Expression profile and RNA Polymerase II occupancy of transposable elements among knock down of the piRNA pathway components in OSCs ChIP-seq, RNA-seq of coding RNA Drosophila melanogaster 10 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47006/E-GEOD-47006.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47006/ E-GEOD-46958 Gene expression profiles in roots of hydroponically grown Arabidopsis treated with 0.125 mM gold transcription profiling by array Arabidopsis thaliana 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46958/E-GEOD-46958.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46958/E-GEOD-46958.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46958/ E-GEOD-46925 Aerobic training modulation of the host systemic milieu directly alters breast cancer cell phenotype in vitro. transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46925/E-GEOD-46925.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46925/E-GEOD-46925.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46925/ E-GEOD-46924 27-Hydroxycholesterol links cholesterol and breast cancer pathophysiology. transcription profiling by array Homo sapiens 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46924/E-GEOD-46924.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46924/E-GEOD-46924.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46924/ E-GEOD-46818 Wnt-signaling potentiates nevogenesis. transcription profiling by array, RNA-seq of coding RNA Homo sapiens 18 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46818/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46818/E-GEOD-46818.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46818/ E-GEOD-46817 Expression data from 7 Human Melanomas RNA-seq of coding RNA Homo sapiens 7 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46817/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46817/ E-GEOD-46805 Expression data from Uninfected and BRAF600V induced melanocytes RNA-seq of coding RNA Homo sapiens 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46805/E-GEOD-46805.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46805/ E-GEOD-46801 Expression data from Control, Uninfected and BRAF infected cells transcription profiling by array Homo sapiens 9 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46801/E-GEOD-46801.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46801/E-GEOD-46801.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46801/ E-GEOD-46551 Consequences of perinatal bisphenol A exposure in a mouse model of multiple sclerosis transcription profiling by array Mus musculus 7 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46551/E-GEOD-46551.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46551/E-GEOD-46551.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46551/ E-GEOD-46479 Ultra-deep RNA-seq of in vitro and in vivo transcripts by Escherichia coli RNA polymerase other, RNA-seq of coding RNA Escherichia coli 5 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46479/ E-GEOD-46466 Gene expression analysis in human colon cancer cells and liver cancer cells with FoxA knockdown. transcription profiling by array Homo sapiens 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46466/E-GEOD-46466.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46466/E-GEOD-46466.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46466/ E-GEOD-46465 Transcriptional responses of human colon and liver cancer cells to TCF inhibition. transcription profiling by array Homo sapiens 14 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46465/E-GEOD-46465.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46465/E-GEOD-46465.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46465/ E-GEOD-46176 Expression of circulating microRNAs in Influenza A patients. transcription profiling by array Homo sapiens 66 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46176/E-GEOD-46176.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46176/E-GEOD-46176.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46176/ E-GEOD-46175 Global Analysis of de novo Transcription Following Biosynthetic Labeling in a Dinoflagellate, Karenia brevis transcription profiling by array Karenia brevis 9 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46175/E-GEOD-46175.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46175/E-GEOD-46175.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46175/ E-GEOD-46174 Global Analysis of mRNA Half-lives Following Biosynthetic Labeling in a Dinoflagellate, Karenia brevis transcription profiling by array Karenia brevis 18 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46174/E-GEOD-46174.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46174/E-GEOD-46174.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46174/ E-GEOD-46132 Genome-wide analysis of gene expression in bladder cancer cell lines 253JB-V and UM-UC13 exposed to bortezomib transcription profiling by array Homo sapiens 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46132/E-GEOD-46132.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46132/ E-GEOD-46060 10 Intellectual Disability samples for clinically relevant CNV detection ChIP-chip by SNP array, genotyping by array Homo sapiens 10 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46060/E-GEOD-46060.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46060/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46060/ E-GEOD-46008 Strand-specific RNA-seq analysis of three streptomycetes RNA-seq of coding RNA, RNA-seq of non coding RNA Streptomyces avermitilis, Streptomyces coelicolor, Streptomyces venezuelae 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46008/E-GEOD-46008.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46008/ E-GEOD-45981 Expression profile of melanoma cells following p300 HAT inhibition transcription profiling by array Homo sapiens 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45981/E-GEOD-45981.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45981/E-GEOD-45981.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45981/ E-GEOD-45953 PHF6 knockdown in rat cortical neurons transcription profiling by array Rattus norvegicus 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45953/E-GEOD-45953.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45953/E-GEOD-45953.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45953/ E-GEOD-45869 Transcriptome study of human mammary epithelial cells following exposure to polymeric Eudragit RS nanoparticles transcription profiling by array Homo sapiens 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45869/E-GEOD-45869.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45869/E-GEOD-45869.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45869/ E-GEOD-45868 Transcriptome study of human mammary epithelial cells following exposure to polymeric Eudragit RS nanoparticles part 2 transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45868/E-GEOD-45868.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45868/E-GEOD-45868.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45868/ E-GEOD-45761 miRNA Expression in Early Porcine Pregnancy transcription profiling by array Sus scrofa 16 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45761/E-GEOD-45761.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45761/E-GEOD-45761.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45761/ E-GEOD-45750 Genome wide analysis of differential gene expression of PFKFB3 under- or overexpression upon inhibition or activation of notch signaling in endothelial cells transcription profiling by array Homo sapiens 24 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45750/E-GEOD-45750.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45750/ E-GEOD-45598 Transcriptome study of human mammary epithelial cells following exposure to polymeric Eudragit RS nanoparticles part 1 transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45598/E-GEOD-45598.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45598/E-GEOD-45598.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45598/ E-GEOD-45597 RNA sequencing of bone marrow hematopoietic progenitor and Gr1+/Mac1+ cells derived from Diap1 wild type, heterozygous, and knockout mice. RNA-seq of coding RNA Mus musculus 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45597/E-GEOD-45597.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45597/ E-GEOD-45366 Loss of a Conserved tRNA Anticodon Modification Perturbs Cellular Signaling RNA-seq of non coding RNA Saccharomyces cerevisiae 24 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45366/ E-GEOD-45260 Germline Aberrations of PAX5 Cause Susceptibility to pre-B cell Acute Lymphoblastic Leukemia transcription profiling by array Mus musculus 40 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45260/E-GEOD-45260.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45260/E-GEOD-45260.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45260/ E-GEOD-45143 Pax6 is required for normal cell cycle exit and the differentiation kinetics of retinal progenitor cells. transcription profiling by array Mus musculus 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45143/E-GEOD-45143.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45143/E-GEOD-45143.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45143/ E-GEOD-45000 Genome-wide methylation analysis of prostate tissues reveals global methylation patterns of prostate cancer methylation profiling by array Homo sapiens 188 2013-08-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45000/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45000/ E-GEOD-44989 Differential expression of genes in spinal cord folowing experimental autoimmune encephalomyelitis (EAE) in mice. transcription profiling by array Mus musculus 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44989/E-GEOD-44989.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44989/E-GEOD-44989.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44989/ E-GEOD-44943 HIF-1 dependent gene expression upon S. aureus infection transcription profiling by array Homo sapiens 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44943/E-GEOD-44943.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44943/E-GEOD-44943.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44943/ E-GEOD-44599 ZNF365 promotes stability of fragile sites and telomeres transcription profiling by array Mus musculus 18 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44599/E-GEOD-44599.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44599/E-GEOD-44599.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44599/ E-GEOD-44415 Expression time-series from Streptomyces coelicolor germination transcription profiling by array Streptomyces coelicolor A3(2) 37 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44415/E-GEOD-44415.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44415/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44415/ E-GEOD-44352 Gene expression profiling of zebrafish embryos at 5 days post fertilization transcription profiling by array, RNA-seq of coding RNA Danio rerio 7 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44352/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44352/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44352/ E-GEOD-44351 Gene expression profiling of zebrafish embryos at 5 days post fertilization [Illumina RNA-Seq] RNA-seq of coding RNA Danio rerio 3 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44351/E-GEOD-44351.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44351/ E-GEOD-44321 poplar bent study-TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDING Species: Populus tremula x Populus aba transcription profiling by array Populus tremula x Populus alba 27 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44321/E-GEOD-44321.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44321/E-GEOD-44321.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44321/ E-GEOD-44226 Gene expression profiling of zebrafish embryos at 5 days post fertilization [Agilent Arrays] transcription profiling by array Danio rerio 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44226/E-GEOD-44226.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44226/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44226/ E-GEOD-44224 Mechanisms of dosage-dependent regulation of gene expression by transcription factor SF-1 ChIP-seq Homo sapiens 13 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44224/E-GEOD-44224.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44224/ E-GEOD-44221 Identification of chromatin regulatory sites in conditions of basal and increased SF-1 dosage in the H295R adrenocortical tumor cell line ChIP-seq Homo sapiens 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44221/E-GEOD-44221.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44221/ E-GEOD-44220 Identification of SF-1 genomic binding sites in conditions of basal and increased dosage in the H295R adrenocortical tumor cell line ChIP-seq Homo sapiens 5 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44220/E-GEOD-44220.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44220/ E-GEOD-44165 affy_sunflower_2010_13-ROS and hormones in sunflower seed dormancy. transcription profiling by array Helianthus annuus 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44165/E-GEOD-44165.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44165/E-GEOD-44165.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44165/ E-GEOD-43907 Identification of p130Cas/ErbB2 dependent invasive signatures in transformed mammary epithelial cells. transcription profiling by array Homo sapiens 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43907/E-GEOD-43907.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43907/ E-GEOD-43728 affy_ath_2012_04-Functional characterization of JMJ24, a putative histone demethylase transcription profiling by array Arabidopsis thaliana 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43728/E-GEOD-43728.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43728/E-GEOD-43728.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43728/ E-GEOD-43660 IL-33 markedly induces murine eosinophil gene transcription via autocrine IL-4-dependent and -independent mechanisms RNA-seq of coding RNA Mus musculus 6 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43660/ E-GEOD-43552 Expression profiling of human medulloblastoma cell line ONS76 upon siRNA-mediated knockdown of KDM5A/LSD1 transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43552/E-GEOD-43552.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43552/E-GEOD-43552.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43552/ E-GEOD-43329 Systematic profiling of human microRNAs in plasma from nasopharyngeal carcinoma patients reveals candidate biomarkers transcription profiling by array Homo sapiens 50 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43329/E-GEOD-43329.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43329/E-GEOD-43329.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43329/ E-GEOD-43295 Comparison of gene expression in three strains of Spodoptera Frugiperda (Insecta: Lepidoptera: Noctuidae) transcription profiling by array Spodoptera frugiperda 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43295/E-GEOD-43295.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43295/E-GEOD-43295.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43295/ E-GEOD-43035 NRSF/REST knockdown, and SF-1 overexpression and knockdown transcription profiling by array Homo sapiens 21 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43035/E-GEOD-43035.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43035/E-GEOD-43035.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43035/ E-GEOD-43033 Expression data from H295R cells where NRSF/REST or SF-1 were knocked down transcription profiling by array Homo sapiens 15 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43033/E-GEOD-43033.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43033/E-GEOD-43033.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43033/ E-GEOD-43032 Expression data from H295R cells in basal conditions/overexpressing SF-1 transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43032/E-GEOD-43032.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43032/E-GEOD-43032.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43032/ E-GEOD-42942 Global gene expression profile of Japanese encephalitis virus(JEV) infected cytolytic B16F10 and Non-cytolytic JEV resistant B16F10r transcription profiling by array Mus musculus 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42942/E-GEOD-42942.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42942/E-GEOD-42942.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42942/ E-GEOD-42666 Expression data from Tet2-hypomorph (knockdown) and/or Ezh2-null Lineage-Sca-1+c-Kit+ (LSK) cells and granulocyte-macrophage progenitors (GMPs) transcription profiling by array Mus musculus 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42666/E-GEOD-42666.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42666/E-GEOD-42666.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42666/ E-GEOD-42511 Transcriptional profiling of Populus leaves with altered SA levels transcription profiling by array Populus tremula x Populus alba 20 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42511/E-GEOD-42511.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42511/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42511/ E-GEOD-42506 Morphine induced sepsis is mediated by abrogation of endotoxin tolerance through modulation of miR-146a, but not miR-155. transcription profiling by array Mus musculus 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42506/E-GEOD-42506.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42506/E-GEOD-42506.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42506/ E-GEOD-42495 Macrophages in T cell/histiocyte rich B cell lymphoma strongly express metal-binding proteins and show a bi-activated phenotype transcription profiling by array Homo sapiens 48 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42495/E-GEOD-42495.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42495/E-GEOD-42495.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42495/ E-GEOD-42459 CD8+ T-cell memory bears the transcriptional imprint of progressive differentiation transcription profiling by array Mus musculus 67 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42459/E-GEOD-42459.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42459/ E-GEOD-42339 RNA-Seq expression data from the reproductive tracts of WT, Hoxa91011, and Hoxd91011 mutant mice RNA-seq of coding RNA Mus musculus 12 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42339/E-GEOD-42339.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42339/ E-GEOD-41993 Expression data from the reproductive tracts of WT, Hoxa9,10,11, and Hoxd9,10,11 mutant mice transcription profiling by array Mus musculus 42 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41993/E-GEOD-41993.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41993/E-GEOD-41993.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41993/ E-GEOD-41754 Combinatorial treatment of DNMT inhibitor and LSD1 inhibitor results in cell growth inhibition and reexpression of epigenetically silenced genes transcription profiling by array, methylation profiling by array Homo sapiens 32 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41754/E-GEOD-41754.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41754/ E-GEOD-41676 Combinatorial treatment of DNMT inhibitor and LSD1 inhibitor results in cell growth inhibition and reexpression of epigenetically silenced genes (gene expression) transcription profiling by array Homo sapiens 24 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41676/E-GEOD-41676.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41676/ E-GEOD-41525 Combinatorial treatment of DNMT inhibitor and LSD1 inhibitor results in cell growth inhibition and reexpression of epigenetically silenced genes (methylation) methylation profiling by array Homo sapiens 8 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41525/E-GEOD-41525.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41525/ E-GEOD-41406 shoots and roots treated with methotrexate and 5-formyl-thf-Transcriptomic and metabolic changes in Arabidopsis thaliana supplemented with 5-CHO-THF and its relationship with the accumulation and transformation to THF active derivatives transcription profiling by array Arabidopsis thaliana 24 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41406/E-GEOD-41406.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41406/E-GEOD-41406.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41406/ E-GEOD-40646 The Genomic Binding Profile of GAGA Element Associated Factor (GAF) in Drosophila S2 cells ChIP-seq Drosophila melanogaster 2 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40646/ E-GEOD-40566 Gene Expression Profiles of Lymphocytes Obtained from Mice treated with Glatimer Acetate and ither Glatiramatoids transcription profiling by array Mus musculus 105 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40566/E-GEOD-40566.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40566/ E-GEOD-40545 RB pathway deregulation promotes invasion and disease progression in a mouse model of MYC-overexpressing mammary tumorigenesis transcription profiling by array Mus musculus 15 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40545/E-GEOD-40545.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40545/E-GEOD-40545.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40545/ E-GEOD-40520 GTL1 regulates ploidy-dependent cell growth through direct transcriptional repression of APC/CCS52A1 in Arabidopsis transcription profiling by array, ChIP-chip by tiling array Arabidopsis thaliana 7 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40520/E-GEOD-40520.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40520/E-GEOD-40520.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40520/ E-GEOD-40519 Genome-wide GTL1 binding sites in Arabidopsis thaliana ChIP-chip by tiling array Arabidopsis thaliana 1 2013-08-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40519/E-GEOD-40519.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40519/ E-GEOD-40518 Comparison of gene expression in Arabidopsis trichome between gtl1-1 mutant and wild type transcription profiling by array Arabidopsis thaliana 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40518/E-GEOD-40518.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40518/E-GEOD-40518.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40518/ E-GEOD-40388 Transcription profiling of Arabidopsis plants overexpressing SlHsfA3 RNA-seq of coding RNA Arabidopsis thaliana 3 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40388/ E-GEOD-40080 ZNF-mediated resistance to imatinib mesylate in gastrointestinal stromal tumor transcription profiling by array Homo sapiens 16 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40080/E-GEOD-40080.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40080/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40080/ E-GEOD-39945 Gene expression profiles of tumor-positive sentinel lymph node biopsies from cutaneous melanoma patients transcription profiling by array Homo sapiens 24 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39945/E-GEOD-39945.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39945/ E-GEOD-39818 Open Ocean and Coastal Strains of Marine Synechococcus display distinctly different Global Responses to DNA Damaging Agents transcription profiling by array Synechococcus sp. CC9311, Synechococcus sp. WH 8102 24 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39818/E-GEOD-39818.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39818/E-GEOD-39818.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39818/ E-GEOD-39810 Gene expression profiles of AD 293 cells mediated by Chandipura virus nucleo (N) protein transcription profiling by array Homo sapiens 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39810/E-GEOD-39810.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39810/E-GEOD-39810.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39810/ E-GEOD-39362 Identification of a core cross-regulatory neurogenic network regulated by the transcription factor Pax6 interacting with Brg1-containing SWI/SNF chromatin remodeling complex transcription profiling by array Mus musculus 16 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39362/E-GEOD-39362.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39362/E-GEOD-39362.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39362/ E-GEOD-39361 Changes of miRNAs during osteogenic differentiation of PDGFRa+ mesenchymal progenitors derived from human skeletal muscle transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39361/E-GEOD-39361.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39361/E-GEOD-39361.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39361/ E-GEOD-39288 Influence of G0s2 gene knockdown on primary hepatocyte transcription profiling by array Mus musculus 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39288/E-GEOD-39288.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39288/E-GEOD-39288.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39288/ E-GEOD-38533 Innate immune pathways in afferent lymph following vaccination with poly(I:C) -containing liposomes RNA-seq of coding RNA Ovis aries 13 2013-08-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38533/ E-GEOD-38300 Gene expression of mouse embryonic gonad [wild type male] transcription profiling by array Mus musculus 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38300/E-GEOD-38300.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38300/E-GEOD-38300.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38300/ E-GEOD-38063 Comparison of the long-term effects of calorie restriction without malnutrition on global gene expression profiles of rat and human skeletal muscle transcription profiling by array Homo sapiens, Rattus norvegicus 35 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38063/E-GEOD-38063.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38063/ E-GEOD-38062 Comparison of the long-term effects of calorie restriction without malnutrition on global gene expression profiles of rat and human skeletal muscle [Rat] transcription profiling by array Rattus norvegicus 10 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38062/E-GEOD-38062.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38062/ E-GEOD-38012 Comparison of the long-term effects of calorie restriction without malnutrition on global gene expression profiles of rat and human skeletal muscle [Human] transcription profiling by array Homo sapiens 25 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38012/E-GEOD-38012.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38012/ E-GEOD-35136 5/6 nephrectomy (5/6Nx) effect on the brain and liver transcription profiling by array Mus musculus 4 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35136/E-GEOD-35136.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35136/E-GEOD-35136.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35136/ E-GEOD-35135 5/6 nephrectomy (5/6Nx) effect on the liver transcription profiling by array Mus musculus 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35135/E-GEOD-35135.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35135/E-GEOD-35135.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35135/ E-GEOD-35134 5/6 nephrectomy (5/6Nx) effect on the brain transcription profiling by array Mus musculus 2 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35134/E-GEOD-35134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35134/E-GEOD-35134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35134/ E-GEOD-30082 IkBa associates with histone H2A in human keratinocytes ChIP-seq Homo sapiens 1 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30082/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30082/ E-GEOD-23397 Genome wide screening for alternative splicing events in pancreatic cancer transcription profiling by array Homo sapiens 21 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23397/E-GEOD-23397.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23397/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23397/ E-GEOD-23362 Genes regulated by SDC1 transcription profiling by array Homo sapiens 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23362/E-GEOD-23362.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23362/E-GEOD-23362.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23362/ E-GEOD-14727 Hypoxia-driven alterations in the B16 melanoma cell transcriptome account for a higher metastatic potential transcription profiling by array Mus musculus 6 2013-08-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-14727/E-GEOD-14727.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-14727/E-GEOD-14727.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-14727/ E-MEXP-3940 Transcription profiling by array of HeLa cells after miR-31 mimic or miR-31 inhibitor transduction. transcription profiling by array Homo sapiens 6 2013-07-31 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3940/E-MEXP-3940.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3940/ E-MEXP-3937 MicroRNA profiling by array of human foreskins from patients with condyloma acuminatum. microRNA profiling by array Homo sapiens 10 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3937/E-MEXP-3937.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3937/E-MEXP-3937.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3937/ E-MEXP-3736 Transcription profiling of mouse pancreatic beta-cells with cre-mediated deletion of exon 3 of the B1 integrin gene transcription profiling by array Mus musculus 2 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3736/E-MEXP-3736.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3736/E-MEXP-3736.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3736/ E-GEOD-49371 Investigation of Alterations in Gene Expression in the Retina Induced by Intravitreal Injection of gold and silicate nanoparticles transcription profiling by array Mus musculus 12 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49371/E-GEOD-49371.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49371/E-GEOD-49371.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49371/ E-GEOD-49362 Medaka larvae were exposed to HBCD transcription profiling by array Oryzias melastigma 12 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49362/E-GEOD-49362.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49362/E-GEOD-49362.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49362/ E-GEOD-49359 Sex-biased expression profile of Schistosoma mansoni microRNAs RNA-seq of non coding RNA Schistosoma mansoni 4 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49359/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49359/ E-GEOD-49353 Evaluating cross-hybridization of murine cDNA to the Affymetrix Human Genome U133 Plus 2.0 chipset transcription profiling by array Homo sapiens, Mus musculus 29 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49353/E-GEOD-49353.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49353/E-GEOD-49353.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49353/ E-GEOD-49351 Microarray gene expression profiling of transgenic mice with myocardium-specific over-expression of fatty acid synthase (FASN) transcription profiling by array Mus musculus 6 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49351/E-GEOD-49351.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49351/E-GEOD-49351.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49351/ E-GEOD-49350 Medicago truncatula seed development at 21-19°C transcription profiling by array Medicago truncatula 32 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49350/E-GEOD-49350.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49350/E-GEOD-49350.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49350/ E-GEOD-49347 Transmission of xanthomonads to Medicago truncatula seeds transcription profiling by array Medicago truncatula 24 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49347/E-GEOD-49347.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49347/E-GEOD-49347.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49347/ E-GEOD-49340 The global gene expression pattern by RCK1 over-expression transcription profiling by array Saccharomyces cerevisiae 1 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49340/E-GEOD-49340.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49340/E-GEOD-49340.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49340/ E-GEOD-49338 ChIP-seq data of Epstein-Barr Virus Nuclear Antigen Leader Protein (EBNALP) ChIP-seq Homo sapiens 2 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49338/E-GEOD-49338.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49338/ E-GEOD-49336 Gene expression in Fut8+/+ and Fut8-/- MEFs transcription profiling by array Mus musculus 2 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49336/E-GEOD-49336.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49336/E-GEOD-49336.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49336/ E-GEOD-49118 Expression analysis of BM cells of ASXL-MT induced MDS mice transcription profiling by array Mus musculus 6 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49118/E-GEOD-49118.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49118/E-GEOD-49118.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49118/ E-GEOD-49117 Expression analysis of 32Dcl3 cells expressing ASXL-MT in the presence of IL-3 or G-CSF transcription profiling by array Mus musculus 8 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49117/E-GEOD-49117.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49117/E-GEOD-49117.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49117/ E-GEOD-48582 Effects of 5?-dihydrotestosterone on male mummichog (Fundulus heteroclitus) testes steroid production and gene expression patterns transcription profiling by array Fundulus heteroclitus 8 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48582/E-GEOD-48582.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48582/E-GEOD-48582.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48582/ E-GEOD-47962 SHAE004: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. transcription profiling by array Homo sapiens 134 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47962/E-GEOD-47962.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47962/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47962/ E-GEOD-47961 SHAE003: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. transcription profiling by array Homo sapiens 141 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47961/E-GEOD-47961.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47961/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47961/ E-GEOD-47960 SHAE002: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures. transcription profiling by array Homo sapiens 163 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47960/E-GEOD-47960.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47960/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47960/ E-GEOD-47586 Murine Cytomegalovirus Protein pM79 is a Key Regulator for Viral Late Transcription transcription profiling by array Mus musculus 4 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47586/E-GEOD-47586.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47586/ E-GEOD-47070 Rat Life Cycle Kidney Gene Expression Data transcription profiling by array Rattus norvegicus 75 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47070/E-GEOD-47070.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47070/E-GEOD-47070.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47070/ E-GEOD-47069 Rat Life Cycle Kidney Female Gene Expression Data transcription profiling by array Rattus norvegicus 40 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47069/E-GEOD-47069.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47069/E-GEOD-47069.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47069/ E-GEOD-47068 Rat Life Cycle Kidney Male Gene Expression Data transcription profiling by array Rattus norvegicus 35 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47068/E-GEOD-47068.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47068/E-GEOD-47068.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47068/ E-GEOD-46954 Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation ChIP-chip by tiling array, RNA-seq of coding RNA, methylation profiling by array Mus musculus 63 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46954/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46954/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46954/ E-GEOD-46953 Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (RNA-Seq) RNA-seq of coding RNA Mus musculus 4 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46953/E-GEOD-46953.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46953/ E-GEOD-46914 IDENTIFICATION OF BIOMARKERS OF RESPONSE TO IFNG DURING ENDOTOXIN TOLERANCE: APPLICATION TO SEPTIC SHOCK transcription profiling by array Homo sapiens 24 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46914/E-GEOD-46914.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46914/E-GEOD-46914.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46914/ E-GEOD-45836 Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (ChIP-chip and MIRA-chip) ChIP-chip by tiling array, methylation profiling by array Mus musculus 59 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45836/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45836/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45836/ E-GEOD-45697 Transcription factor transcriptome during somatic embryogenesis (SE) in Arabidopsis thaliana transcription profiling by RT-PCR Arabidopsis thaliana 6 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45697/E-GEOD-45697.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45697/ E-GEOD-45362 miR-18a modulates gene transcription in breast cancer cells treated with Cobalt(II) chloride transcription profiling by array Homo sapiens 8 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45362/E-GEOD-45362.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45362/ E-GEOD-45330 Leukocyte gene expression variation as a function of psychological well-being transcription profiling by array Homo sapiens 79 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45330/E-GEOD-45330.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45330/ E-GEOD-45005 Expression data from renal cortex of ICR-derived Glomerulonephritis (ICGN) mice and ICR mice transcription profiling by array Mus musculus 12 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45005/E-GEOD-45005.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45005/E-GEOD-45005.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45005/ E-GEOD-42542 Effect of clpX overexpression in Synechococcus transcription profiling by array Synechococcus elongatus PCC 7942 4 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42542/E-GEOD-42542.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42542/E-GEOD-42542.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42542/ E-GEOD-41806 Transcriptional profiling of Neurospora crassa? mak-2reveals that mitogenactivated protein kinase MAK-2 participates in the phosphate signaling pathway transcription profiling by array Neurospora crassa 16 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41806/E-GEOD-41806.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41806/E-GEOD-41806.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41806/ E-GEOD-41276 Classification of Myeloma Using Global MicroRNA Profiling transcription profiling by array Homo sapiens 163 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41276/E-GEOD-41276.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41276/E-GEOD-41276.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41276/ E-GEOD-41107 Experiment 2: Pou5f1 and Sox2 overexpression experiments protein synthesis inhibition transcription profiling by array Danio rerio 16 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41107/E-GEOD-41107.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41107/ E-GEOD-40936 Metformin mild supplementation improves health and survival of mice transcription profiling by array Mus musculus 30 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40936/E-GEOD-40936.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40936/ E-GEOD-39403 A gDNA microarray for genotyping Salvia species comparative genomic hybridization by array Salvia elegans, Salvia fruticosa, Salvia lanceolata, Salvia lavandulifolia, Salvia lyrata, Salvia mexicana, Salvia microphylla, Salvia miltiorrhiza, Salvia officinalis, Salvia przewalskii, Salvia runcinata, Salvia sclarea, Salvia sinica 15 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39403/E-GEOD-39403.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39403/E-GEOD-39403.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39403/ E-GEOD-39350 Gene expression profiles of non-genotoxic hepatocarcinogens and hepatotoxicants in rat liver transcription profiling by array Rattus norvegicus 38 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39350/E-GEOD-39350.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39350/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39350/ E-GEOD-37694 Genome-wide expression profiling of PpABI1 disruptants transcription profiling by array Physcomitrella patens 26 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37694/E-GEOD-37694.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37694/E-GEOD-37694.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37694/ E-GEOD-36470 Rat superior olivary complex transcription profiling by array Rattus norvegicus 42 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36470/E-GEOD-36470.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36470/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36470/ E-GEOD-34003 Time course expression study in the rat superior olivary complex transcription profiling by array Rattus norvegicus 36 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34003/E-GEOD-34003.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34003/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34003/ E-GEOD-33290 Gene expression signatures of dasatinib-treated chronic myeloid leukemia patients with resistance to imatinib transcription profiling by array Homo sapiens 54 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33290/E-GEOD-33290.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33290/ E-GEOD-33288 Noncoding RNA expression profile of dasatinib-treated chronic myeloid leukemia patients with resistance to imatinib transcription profiling by array Homo sapiens 26 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33288/E-GEOD-33288.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33288/ E-GEOD-33224 Protein coding gene expression profile of dasatinib-treated chronic myeloid leukemia patients with resistance to imatinib transcription profiling by array Homo sapiens 28 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33224/E-GEOD-33224.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33224/ E-GEOD-31685 The influence of resveratrol on rheumatoid fibroblast-like synoviocytes based on a gene chip transcription analysis transcription profiling by array Homo sapiens 6 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31685/E-GEOD-31685.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31685/E-GEOD-31685.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31685/ E-GEOD-30669 PDK1 Signaling Towards PLK1-Myc Activation Confers Oncogenic Transformation and Tumor Initiating Cell Activation and Resistance to mTOR-targeted Therapy. transcription profiling by array Homo sapiens 12 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30669/E-GEOD-30669.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30669/ E-GEOD-26078 Global transcriptomic response of serum-resistant Neisseria meningitidis transcription profiling by array Neisseria meningitidis, Neisseria meningitidis MC58 9 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26078/E-GEOD-26078.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26078/E-GEOD-26078.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26078/ E-GEOD-25493 Expression of PTTG1 is associated with aggressive clear cell renal carcinoma transcription profiling by array Homo sapiens 4 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-25493/E-GEOD-25493.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-25493/ E-GEOD-16764 Comparative microarray analyses between the rat superior olivary complex and the brain transcription profiling by array Rattus norvegicus 28 2013-07-31 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16764/E-GEOD-16764.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16764/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16764/ E-MTAB-1552 ChIP-chip by array of TAP-tagged Saccharomyces cerevisiae strains to elucidate the general initiation-elongation transition of Pol II ChIP-chip by array Saccharomyces cerevisiae 17 2013-07-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1552/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1552/ E-GEOD-49328 Gene expression on in vitro activated DCs transcription profiling by array Mus musculus 2 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49328/E-GEOD-49328.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49328/E-GEOD-49328.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49328/ E-GEOD-49327 Identification of neural stem cell gene expression signatures associated with disease progression in alveolar soft part sarcoma by integrated molecular profiling transcription profiling by array, comparative genomic hybridization by array Homo sapiens 28 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49327/E-GEOD-49327.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49327/ E-GEOD-49324 Identification of neural stem cell gene expression signatures associated with disease progression in alveolar soft part sarcoma by integrated molecular profiling [aCGH] comparative genomic hybridization by array Homo sapiens 15 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49324/E-GEOD-49324.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49324/ E-GEOD-49323 Angiotensin converting enzyme inhibition attenuates insterstitial injury in a murine model of chronic glomerulonephritis transcription profiling by array Mus musculus 4 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49323/E-GEOD-49323.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49323/E-GEOD-49323.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49323/ E-GEOD-49318 Genome-wide gene expression analysis of new cardiomyocytes (CMs) derived from resident c-kitpos endogenous cardiac stem cells (eCSCs) after myocardial injury by Isoproterenol (ISO) in mice. transcription profiling by array Mus musculus 9 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49318/E-GEOD-49318.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49318/ E-GEOD-49317 Affymetrix SNP array data for hepatocellular carcinoma and their adjacent liver tissue samples genotyping by array Homo sapiens 86 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49317/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49317/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49317/ E-GEOD-49311 Expression data from left versus right mouse entorhinal cortex (EC). transcription profiling by array Mus musculus 6 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49311/E-GEOD-49311.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49311/E-GEOD-49311.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49311/ E-GEOD-49308 CTCL and ATL cell lines, mir-150 transfected versus controls transcription profiling by array Homo sapiens 8 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49308/E-GEOD-49308.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49308/E-GEOD-49308.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49308/ E-GEOD-49307 A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology transcription profiling by array Caenorhabditis elegans 15 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49307/E-GEOD-49307.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49307/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49307/ E-GEOD-49306 Genome-wide gene expression profiles in lung tissues of pig breeds differing in resistance to porcine reproductive and respiratory syndrome virus transcription profiling by array Sus scrofa 6 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49306/E-GEOD-49306.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49306/E-GEOD-49306.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49306/ E-GEOD-46884 Gene Expression Signature of Human Polynucleotide Phosphorylase (hPNPaseold-35) in Melanoma transcription profiling by array Homo sapiens 15 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46884/E-GEOD-46884.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46884/E-GEOD-46884.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46884/ E-GEOD-46858 Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing RNA-seq of coding RNA Equus caballus 8 2013-07-30 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46858/ E-GEOD-44551 PAX5 overexpression is not enough to reestablish the mature B-cell phenotype in classical Hodgkin lymphoma (ChIP-Seq) ChIP-seq Homo sapiens 12 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44551/E-GEOD-44551.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44551/ E-GEOD-44244 PAX5 overexpression is not enough to reestablish the mature B-cell phenotype in classical Hodgkin lymphoma transcription profiling by array Homo sapiens 18 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44244/E-GEOD-44244.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44244/ E-GEOD-44091 Genome-wide expression of the epithelial layer cells of mice injected with Clostridium difficile Toxin A and B transcription profiling by array Mus musculus 32 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44091/E-GEOD-44091.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44091/ E-GEOD-43941 Transcriptome sequencing and microarray development for the woodrat (Neotoma spp.): custom genetic tools for exploring herbivore ecology transcription profiling by array Neotoma bryanti, Neotoma lepida 12 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43941/E-GEOD-43941.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43941/E-GEOD-43941.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43941/ E-GEOD-42723 Genome wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer methylation profiling by high throughput sequencing Homo sapiens 6 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42723/E-GEOD-42723.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42723/ E-GEOD-42588 Affymetrix microarray and qRT-PCR expression profile of HEK293 cells stably transfected with PRL-1 (PTP4A1) or empty pcDNA4 vector (control) transcription profiling by RT-PCR, transcription profiling by array Homo sapiens 9 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42588/E-GEOD-42588.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42588/E-GEOD-42588.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42588/ E-GEOD-42587 Quantitative real-time RT-PCR analysis of HEK293 cells stably transfected with PRL-1 (PTP4A1) or empty pcDNA4 vector control. transcription profiling by RT-PCR Homo sapiens 4 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42587/E-GEOD-42587.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42587/ E-GEOD-42586 Expression profile of HEK293 cells stably transfected with PRL-1 (PTP4A1) or empty pcDNA4 vector (control) transcription profiling by array Homo sapiens 5 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42586/E-GEOD-42586.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42586/E-GEOD-42586.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42586/ E-GEOD-40849 Vav proteins orchestrate a keratinocyte auto/paracrine program critical for skin tumorigenesis. transcription profiling by array Mus musculus 17 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40849/E-GEOD-40849.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40849/E-GEOD-40849.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40849/ E-GEOD-40524 Unprecedented alternative splicing and 3 Mb of novel transcribed sequence leads to significant transcript diversity in the transcriptome of the human retina other, RNA-seq of coding RNA Homo sapiens 3 2013-07-30 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40524/ E-GEOD-39506 Cytokine and gene transcription profiles of immune responses elicited by HIV lipopeptide vaccine in HIV-negative volunteers transcription profiling by array Homo sapiens 161 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39506/E-GEOD-39506.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39506/ E-GEOD-38432 Expression data from Andromonoecious poplar flower transcription profiling by array Populus tomentosa 4 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38432/E-GEOD-38432.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38432/E-GEOD-38432.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38432/ E-GEOD-37138 Exon array analysis of the response to bevacizumab/erlotinib in advanced non-small cell lung cancer transcription profiling by array Homo sapiens 117 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37138/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37138/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37138/ E-GEOD-33499 Microarray analysis of male strobili in fertile and sterile male strobili of Cryptomeria japonica transcription profiling by tiling array Cryptomeria japonica 74 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33499/E-GEOD-33499.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33499/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33499/ E-GEOD-16975 Hydrogen sulfide (H2S) modulates lifespan of C.elegans transcription profiling by array Caenorhabditis elegans 6 2013-07-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16975/E-GEOD-16975.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-16975/E-GEOD-16975.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16975/ E-MEXP-3942 Transcription profiling by array of Sinorhizobium meliloti 1021 DivJ kinase knock out transcription profiling by array Sinorhizobium meliloti 4 2013-07-29 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3942/E-MEXP-3942.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3942/ E-MEXP-3267 Ruberti A.thaliana Shade Avoidance Response wt and phyA transcription profiling by array Arabidopsis thaliana 8 2013-07-29 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3267/E-MEXP-3267.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3267/ E-MEXP-3266 Ruberti A. thaliana Intermediate molecular events in plant responses to canopy shade transcription profiling by array Arabidopsis thaliana 6 2013-07-29 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3266/E-MEXP-3266.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3266/ E-GEOD-49303 Cerebellar Gene Expression Profile Analysis in a Rat Model of Acute Alcohol Intoxication transcription profiling by array Rattus norvegicus 6 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49303/E-GEOD-49303.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49303/E-GEOD-49303.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49303/ E-GEOD-49301 Human hepatic stellate cell line LX-2 activated under acidic culture condition transcription profiling by array Homo sapiens 4 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49301/E-GEOD-49301.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49301/E-GEOD-49301.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49301/ E-GEOD-49293 The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation transcription profiling by array Homo sapiens 8 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49293/E-GEOD-49293.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49293/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49293/ E-GEOD-49291 Ontogeny, distribution and potential roles of hydroxymethylcytosine in human liver function methylation profiling by high throughput sequencing Homo sapiens 30 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49291/E-GEOD-49291.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49291/ E-GEOD-48821 Target specificity amongst canonical nuclear poly(A) polymerases in plants modulates organ growth and pathogen response transcription profiling by array Arabidopsis thaliana 8 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48821/E-GEOD-48821.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48821/E-GEOD-48821.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48821/ E-GEOD-48259 Analysis of a fungus-specific transcription factor family, the Candida albicans zinc cluster proteins, by artificial activation transcription profiling by array Candida albicans 15 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48259/E-GEOD-48259.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48259/ E-GEOD-44812 Complex regulation of the PEP carboxykinase gene pck and characterization of its GntR-type regulator IolR as a repressor of myo-inositol utilization genes in Corynebacterium glutamicum transcription profiling by array Corynebacterium glutamicum ATCC 13032 3 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44812/E-GEOD-44812.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44812/E-GEOD-44812.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44812/ E-GEOD-44183 Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing other, RNA-seq of coding RNA Homo sapiens, Mus musculus 47 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44183/E-GEOD-44183.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44183/ E-GEOD-44042 Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds transcription profiling by array Allochromatium vinosum DSM 180 13 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44042/E-GEOD-44042.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44042/E-GEOD-44042.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44042/ E-GEOD-44041 Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds [Set2] transcription profiling by array Allochromatium vinosum DSM 180 4 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44041/E-GEOD-44041.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44041/E-GEOD-44041.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44041/ E-GEOD-44040 Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds [Set1] transcription profiling by array Allochromatium vinosum DSM 180 9 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44040/E-GEOD-44040.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44040/E-GEOD-44040.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44040/ E-GEOD-42658 Expression profiles for paediatric brain tumours transcription profiling by array Homo sapiens 73 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42658/E-GEOD-42658.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42658/ E-GEOD-42656 Gene expression profiles for paediatric brain tumours transcription profiling by array Homo sapiens 73 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42656/E-GEOD-42656.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42656/ E-GEOD-42515 Gene Set Enrichment Analysis reveals lineage relationships between mouse and human gliomas and identifies stem cells and PNET as distinct entities transcription profiling by array Mus musculus 33 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42515/E-GEOD-42515.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42515/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42515/ E-GEOD-41018 Rapamycin extends life span, but has limited effects on aging in mice transcription profiling by array Mus musculus 30 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41018/E-GEOD-41018.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41018/ E-GEOD-32928 Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens transcription profiling by array Physcomitrella patens 8 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32928/E-GEOD-32928.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32928/E-GEOD-32928.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32928/ E-GEOD-24629 Comparison of two clones (4106a and FRC) of Myzus Persicae (Sulzer) (Hemiptera: Aphididae) transcription profiling by array Myzus persicae 8 2013-07-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24629/E-GEOD-24629.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-24629/E-GEOD-24629.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24629/ E-GEOD-49288 Differentially expressed gene profiles according to physical status of human papillomavirus integration in cervical cancer transcription profiling by array Homo sapiens 39 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49288/E-GEOD-49288.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49288/E-GEOD-49288.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49288/ E-GEOD-49287 AR and c-Myb depletion effects in prostate cancer cells transcription profiling by array Homo sapiens 60 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49287/E-GEOD-49287.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49287/ E-GEOD-49286 Genome-wide analysis of c-Myb-responsive gene expression in prostate cancer cells transcription profiling by array Homo sapiens 24 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49286/E-GEOD-49286.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49286/ E-GEOD-49285 Genome-wide analysis of AR-responsive gene expression in prostate cancer cells transcription profiling by array Homo sapiens 36 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49285/E-GEOD-49285.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49285/ E-GEOD-43972 Passage through the mammalian gut triggers a phenotypic switch required for Candida albicans commensalism transcription profiling by array Candida albicans 16 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43972/E-GEOD-43972.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43972/E-GEOD-43972.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43972/ E-GEOD-43532 The role of microRNA-regulating energy metabolism and pollen wall development in male sterility in cotton RNA-seq of non coding RNA Gossypium hirsutum 7 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43532/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43532/ E-GEOD-43531 Comparative expression profiling of miRNA during anther development in genetic male sterile and wild type cotton [small RNA] RNA-seq of non coding RNA Gossypium hirsutum 6 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43531/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43531/ E-GEOD-43389 Comparative expression profiling of miRNA during anther development in genetic male sterile and wild type cotton [degradome] RNA-seq of non coding RNA Gossypium hirsutum 1 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43389/E-GEOD-43389.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43389/ E-GEOD-38101 USP49 deubiquitinates histone H2B and regulates pre-mRNA splicing ChIP-seq, RNA-seq of coding RNA Homo sapiens 10 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38101/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38101/ E-GEOD-38100 Examination of gene expression in wild type and USP49 knockdown cells [RNA-Seq] RNA-seq of coding RNA Homo sapiens 2 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38100/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38100/ E-GEOD-38099 Examination of histone H2B ubiquitination in wild type and USP49 knockdown cells [ChIP-Seq] ChIP-seq Homo sapiens 8 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38099/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38099/ E-GEOD-12513 Genes regulated by AGR2 in pancreatic cancer cell lines FA6 and MiaPaCa2 transcription profiling by array Homo sapiens 12 2013-07-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-12513/E-GEOD-12513.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-12513/E-GEOD-12513.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-12513/ E-GEOD-49283 Translational activation of developmental mRNAs during neonatal mouse testis development transcription profiling by array Mus musculus 12 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49283/E-GEOD-49283.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49283/E-GEOD-49283.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49283/ E-GEOD-49282 Identification of Arabidopsis thaliana PRR7 regulated clock components and circadian outputs through genome-wide binding sites analysis ChIP-seq Arabidopsis thaliana 6 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49282/E-GEOD-49282.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49282/ E-GEOD-49271 Real-time quantitative PCR analysis of mouse mature CD4SP thymocytes transcription profiling by RT-PCR Mus musculus 4 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49271/E-GEOD-49271.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49271/ E-GEOD-49270 Real-time quantitative PCR analysis of mouse immature CD4SP thymocytes transcription profiling by RT-PCR Mus musculus 4 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49270/E-GEOD-49270.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49270/ E-GEOD-49264 Real-time quantitative PCR analysis of mouse total CD4SP thymocytes transcription profiling by RT-PCR Mus musculus 4 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49264/E-GEOD-49264.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49264/ E-GEOD-39799 Identification of transcription factors potentially involved in the juvenile to adult phase transition in Pineapple sweet orange (C. sinensis (L.) transcription profiling by array Citrus sinensis 4 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39799/E-GEOD-39799.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39799/E-GEOD-39799.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39799/ E-GEOD-39798 Identification of transcription factors potentially involved in the juvenile to adult phase transition in rough lemon (C. jambirhi Lush.) transcription profiling by array Citrus jambhiri 4 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39798/E-GEOD-39798.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39798/E-GEOD-39798.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39798/ E-GEOD-39703 Transcriptomic analysis of zebrafish during development and homeostasis RNA-seq of coding RNA Danio rerio 16 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39703/E-GEOD-39703.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39703/ E-GEOD-31262 Comparison study of glioma stem cells and adult human neural stem cells transcription profiling by array Homo sapiens 14 2013-07-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31262/E-GEOD-31262.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31262/E-GEOD-31262.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31262/ E-GEOD-49240 Similarities and differences between macrophage polarized gene profiles (Illumina) transcription profiling by array Homo sapiens 12 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49240/E-GEOD-49240.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49240/ E-GEOD-49231 Clonal Genetic and Hematopoietic Heterogeneity among Human Induced Pluripotent Stem Cell lines transcription profiling by array Homo sapiens 36 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49231/E-GEOD-49231.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49231/E-GEOD-49231.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49231/ E-GEOD-49224 ChIP-Seq for transcriptional regulators and RNA Polymerase II in tumor cells treated with JQ1 ChIP-seq Homo sapiens 20 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49224/E-GEOD-49224.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49224/ E-GEOD-49215 Genomic characterization of three acute lymphoblastic leukemia cases and one established cell line REH at the single cell level genotyping by array, comparative genomic hybridization by array Homo sapiens 6 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49215/E-GEOD-49215.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49215/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49215/ E-GEOD-49214 seq-ab9051_H4K20me1_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49214/E-GEOD-49214.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49214/ E-GEOD-49213 seq-AB46540_NIgG_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49213/E-GEOD-49213.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49213/ E-GEOD-49212 seq-SDQ2966_MIS12_N2_Mxemb ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49212/E-GEOD-49212.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49212/ E-GEOD-49211 seq-HK72A9_H4K8ac_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49211/E-GEOD-49211.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49211/ E-GEOD-49210 seq-ab12181_H3K9acS10_873968_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49210/E-GEOD-49210.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49210/ E-GEOD-49209 seq-SDQ3520_LIN61_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49209/E-GEOD-49209.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49209/ E-GEOD-49208 seq-Ab2621_H3K79me3_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49208/E-GEOD-49208.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49208/ E-GEOD-49207 seq-HK00009_H3K9me3_2F3_N2_Eemb ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49207/E-GEOD-49207.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49207/ E-GEOD-49206 seq-ab8895_H3K4me1:733246_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49206/E-GEOD-49206.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49206/ E-GEOD-49205 seq-ab8896_H3K9me1_104560_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49205/E-GEOD-49205.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49205/ E-GEOD-49204 seq-SDQ3166_LIN37_N2_LTemb ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49204/E-GEOD-49204.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49204/ E-GEOD-49203 seq-SDQ4501_T09A5.8_FEM2_AD ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49203/E-GEOD-49203.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49203/ E-GEOD-49202 seq-WA30932379_H3K9ac_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49202/E-GEOD-49202.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49202/ E-GEOD-49201 seq-AR0144_H3_144_N2_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49201/E-GEOD-49201.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49201/ E-GEOD-49199 Canonical Wnt signaling negatively modulates T regulatory cell function ChIP-seq Homo sapiens 2 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49199/E-GEOD-49199.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49199/ E-GEOD-49192 Cell Reprogramming experiment (reprogramming cardiac fibroblasts into cardiomyocytes) transcription profiling by array Homo sapiens, Mus musculus 37 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49192/E-GEOD-49192.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49192/E-GEOD-49192.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49192/ E-GEOD-48866 ChIP-seq of TALE fusions ChIP-seq Homo sapiens 3 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48866/E-GEOD-48866.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48866/ E-GEOD-48204 Gene expression in epithelial, EMT (epithelial-mesenchymal transition) and MET (mesenchymal-epithelial transition) cells transcription profiling by array Mus musculus 6 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48204/E-GEOD-48204.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48204/E-GEOD-48204.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48204/ E-GEOD-48145 Juvenile hormone regulation of Drosophila aging transcription profiling by array Drosophila melanogaster 12 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48145/E-GEOD-48145.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48145/E-GEOD-48145.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48145/ E-GEOD-47782 Evidence for a key role of cytochrome bo3 oxidase in respiratory energy metabolism of Gluconobacter oxydans transcription profiling by array Gluconobacter oxydans 621H 3 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47782/E-GEOD-47782.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47782/E-GEOD-47782.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47782/ E-GEOD-46393 HOXB7 mRNA is overexpressed in pancreatic ductal adenocarcinomas and its knockdown induces cell cycle arrest and apoptosis. transcription profiling by array Homo sapiens 8 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46393/E-GEOD-46393.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46393/E-GEOD-46393.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46393/ E-GEOD-41700 Different transcriptional strategies for zygotic genome activation in Drosophila [ChIP-Seq] ChIP-seq Drosophila melanogaster 25 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41700/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41700/ E-GEOD-41686 Different transcriptional strategies for zygotic genome activation in Drosophila [MNase-Seq] ChIP-seq Drosophila melanogaster 1 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41686/E-GEOD-41686.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41686/ E-GEOD-37223 Global gene expresion profile of phenotypically distinct human mammary epithelial subpopulations of various developmental age transcription profiling by array Homo sapiens 24 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37223/E-GEOD-37223.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37223/E-GEOD-37223.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37223/ E-GEOD-29386 Transcriptional and translational effect of the lack of translation initiation factor eIF(iso)4E other, transcription profiling by array Arabidopsis thaliana 6 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29386/E-GEOD-29386.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29386/E-GEOD-29386.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29386/ E-GEOD-23242 Analysis of TLS activity in PGC-1alpha+/+ and PGC-1alpha-/- hepatocytes transcription profiling by array Mus musculus 12 2013-07-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23242/E-GEOD-23242.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23242/E-GEOD-23242.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23242/ E-MEXP-3778 Transcription profiling by array of human fibroblast cell line WI38 expressing shCt or shUbc9 to analyse transcriptionnal changes in cells were sumoylation pathway is inactivated transcription profiling by array Homo sapiens 6 2013-07-25 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3778/E-MEXP-3778.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3778/ E-MEXP-3777 Transcription profiling by array of Ras-induced human fibroblast cell line WI38 to analyse transcriptional changes in senescent cells transcription profiling by array Homo sapiens 6 2013-07-25 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3777/E-MEXP-3777.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3777/ E-MEXP-3776 Transcription profiling by array of human fibroblast cell line WI38 overexpressiong the SUMO E3 ligase PIASy to analyse transcriptional changes transcription profiling by array Homo sapiens 6 2013-07-25 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3776/E-MEXP-3776.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3776/ E-GEOD-49184 The gene expression upon dominant negative form of GAS2 (GAS2DN) in MEG-01 cells transcription profiling by array Homo sapiens 2 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49184/E-GEOD-49184.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49184/E-GEOD-49184.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49184/ E-GEOD-49164 Requirement for Lyl1 in a model of Lmo2-driven early T-cell precursor ALL transcription profiling by array Mus musculus 12 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49164/E-GEOD-49164.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49164/ E-GEOD-48552 Alteration of the microRNA network during the progression of Alzheimer?s disease RNA-seq of non coding RNA Homo sapiens 12 2013-07-25 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48552/ E-GEOD-47114 RNA-Guided Human Gene Activation by Cas9/CRISPR-Based Engineered Transcription Factors RNA-seq of coding RNA Homo sapiens 7 2013-07-25 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47114/ E-GEOD-41703 A global change in RNA Polymerase II pausing during the Drosophila midblastula transition ChIP-seq Drosophila melanogaster 26 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41703/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41703/ E-GEOD-39618 Comparative transcriptome analysis of various adipose depots in Hanwoo RNA-seq of coding RNA Bos taurus 35 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39618/E-GEOD-39618.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39618/ E-GEOD-39444 Nanotoxicogenomic study of ZnO and TiO2 responses transcription profiling by array Homo sapiens 161 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39444/E-GEOD-39444.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39444/E-GEOD-39444.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39444/ E-GEOD-39330 Nanotoxicogenomic study of ZnO and TiO2 responses (Affymetrix) transcription profiling by array Homo sapiens 71 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39330/E-GEOD-39330.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39330/E-GEOD-39330.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39330/ E-GEOD-39316 Nanotoxicogenomic study of ZnO and TiO2 responses (Illumina) transcription profiling by array Homo sapiens 90 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39316/E-GEOD-39316.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39316/ E-GEOD-38031 DNA damage-induced differentiation of NSC transcription profiling by array Mus musculus 8 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38031/E-GEOD-38031.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38031/E-GEOD-38031.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38031/ E-GEOD-20489 Microarray characterization of gene expression changes in blood during acute ethanol exposure transcription profiling by array Homo sapiens 54 2013-07-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20489/E-GEOD-20489.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20489/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-20489/ E-MTAB-1613 RNA-seq of epidermal sheets of epidermal sheet-specific Evi-K14-Cre knockout mice and wild-type controls RNA-seq of coding RNA Mus musculus 6 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1613/E-MTAB-1613.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1613/ E-MTAB-1529 Methylation profiling by array of human U937 cells treated with demethylating drugs 5-azacytidine and CP-4200 for 72 hours methylation profiling by array Homo sapiens 7 2013-07-24 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1529/E-MTAB-1529.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1529/ E-MTAB-1230 Transcription profling by array of human MDA-MB-231 cells following Fra1 silencing transcription profiling by array Homo sapiens 8 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1230/E-MTAB-1230.processed.2.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1230/E-MTAB-1230.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1230/ E-GEOD-49174 SetD8 Knockdown in ß-estradiol-treated (24 h) G1E-ER-GATA-1 cells transcription profiling by array Mus musculus 6 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49174/E-GEOD-49174.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49174/E-GEOD-49174.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49174/ E-GEOD-49170 miR expression profiling of mouse hematopoietic stem and progenitor populations transcription profiling by array Mus musculus 33 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49170/E-GEOD-49170.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49170/E-GEOD-49170.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49170/ E-GEOD-49169 miR expression profiling of mouse hematopoietic stem and progenitor populations [mRNA] transcription profiling by array Mus musculus 17 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49169/E-GEOD-49169.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49169/E-GEOD-49169.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49169/ E-GEOD-49167 miR expression profiling of mouse hematopoietic stem and progenitor populations [miRNA] transcription profiling by array Mus musculus 16 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49167/E-GEOD-49167.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49167/E-GEOD-49167.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49167/ E-GEOD-49165 Expression data from mesenchymal stem cells of ossifying fibroma transcription profiling by array Homo sapiens 3 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49165/E-GEOD-49165.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49165/E-GEOD-49165.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49165/ E-GEOD-49151 Expression data from Klf4 KD cells in the presence and absence of TGF? in NMuMG cells transcription profiling by array Mus musculus 8 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49151/E-GEOD-49151.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49151/E-GEOD-49151.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49151/ E-GEOD-49136 Toxicity and transcriptomic analysis in Hyalella azteca suggests increased exposure and susceptibility of epibenthic organisms to Zinc Oxide Nanoparticles transcription profiling by array Hyalella azteca 29 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49136/E-GEOD-49136.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49136/E-GEOD-49136.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49136/ E-GEOD-49115 Mice cerbellum extracts: SCA7 KI mice vs. wild type mice transcription profiling by array Mus musculus 30 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49115/E-GEOD-49115.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49115/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49115/ E-GEOD-47002 Transcriptome comparison of murine wild-type and dumbo retinas at P15 transcription profiling by array Mus musculus 8 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47002/E-GEOD-47002.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47002/E-GEOD-47002.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47002/ E-GEOD-44048 Human glioma cell line T98G: BAP-PCBP2 RIP vs. BAP-GFP RIP (Control) transcription profiling by array Homo sapiens 3 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44048/E-GEOD-44048.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44048/E-GEOD-44048.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44048/ E-GEOD-43002 The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress ChIP-seq, RNA-seq of coding RNA Saccharomyces cerevisiae 66 2013-07-24 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43002/ E-GEOD-43001 The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress (rapamycin or DMSO) ChIP-seq Saccharomyces cerevisiae 30 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43001/E-GEOD-43001.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43001/ E-GEOD-42983 The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress (RNA-seq) RNA-seq of coding RNA Saccharomyces cerevisiae 18 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42983/E-GEOD-42983.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42983/ E-GEOD-42971 The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress (H2O2) ChIP-seq Saccharomyces cerevisiae 18 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42971/E-GEOD-42971.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42971/ E-GEOD-42213 SUMO is an Integral and Instructive Component of Chromatin in Cell Growth and Senescence ChIP-seq, RNA-seq of coding RNA Homo sapiens 26 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42213/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42213/ E-GEOD-42212 Quantitative analysis of proliferative and Ras-induced senescent human primary fibroblasts transcriptomes RNA-seq of coding RNA Homo sapiens 6 2013-07-24 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42212/ E-GEOD-42211 Genome wide occupancy of SUMO machinery in proliferative and Ras-induced senescent human primary fibroblasts ChIP-seq Homo sapiens 20 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42211/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42211/ E-GEOD-39786 Expression data for knockdown of H2ac in E2-treated MCF-7 cell lines transcription profiling by array Homo sapiens 4 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39786/E-GEOD-39786.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39786/E-GEOD-39786.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39786/ E-GEOD-39604 DNA Methylome in Human Peripheral Blood Monocytes methylation profiling by high throughput sequencing Homo sapiens 18 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39604/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39604/ E-GEOD-39571 Expression data from exosomes transcription profiling by RT-PCR Homo sapiens 13 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39571/E-GEOD-39571.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39571/ E-GEOD-37735 Gene expression of abnormal uric acid synthesis animal model of silk worm Bombyx mori. transcription profiling by array Bombyx mori 4 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37735/E-GEOD-37735.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37735/E-GEOD-37735.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37735/ E-GEOD-37275 The pluripotent genome in three dimensions is shaped around pluripotency factors ChIP-seq Mus musculus 50 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37275/E-GEOD-37275.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37275/ E-GEOD-30629 Gene expression profile of isolated splenic NK cells from mice treated with ptaquiloside and/or selenium transcription profiling by array Mus musculus 20 2013-07-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30629/E-GEOD-30629.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30629/E-GEOD-30629.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30629/ E-MTAB-1641 Transcription profiling by array of two HPV16 E6/E7 immortalized skin keratinocyte cell lines, NEB1 and EBDM1, derived from a healthy individual and a 5-year-old patient suffering from Dowling-Meara type epidermolysis bullosa simplex (EBS-DM), respectively transcription profiling by array Homo sapiens 2 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1641/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1641/E-MTAB-1641.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1641/ E-MTAB-1640 Transcription profiling by array of two HPV16 E6/E7 immortalized skin keratinocyte cell lines, NEB1 and KEB7, derived from a healthy individual and a patient suffering from Dowling-Meara type epidermolysis bullosa simplex (EBS-DM), respectively transcription profiling by array Homo sapiens 2 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1640/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1640/E-MTAB-1640.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1640/ E-MEXP-3740 Transcription profiling by array of mouse liver progenitor cells and extracellular vesicles isolated from these cells transcription profiling by array Mus musculus, Rattus norvegicus 5 2013-07-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3740/E-MEXP-3740.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3740/ E-MEXP-3719 Transcription profiling by array of seven developmental stages of Medicago truncatula A17 during seed maturation (from 24 DAP to dry seeds) transcription profiling by array Medicago truncatula 21 2013-07-23 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3719/E-MEXP-3719.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3719/ E-GEOD-49129 Otitis Media Impact on Ear transcription profiling by array Mus musculus 31 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49129/E-GEOD-49129.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49129/E-GEOD-49129.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49129/ E-GEOD-49128 Otitis Media Impact on Middle Ear transcription profiling by array Mus musculus 17 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49128/E-GEOD-49128.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49128/E-GEOD-49128.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49128/ E-GEOD-49122 Otitis Media Impact on Inner Ear transcription profiling by array Mus musculus 14 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49122/E-GEOD-49122.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49122/E-GEOD-49122.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49122/ E-GEOD-49116 Protective Role of IL6 in Vascular Remodeling in Schistosoma-Pulmonary Hypertension transcription profiling by array, RNA-seq of coding RNA Mus musculus 22 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49116/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49116/E-GEOD-49116.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49116/ E-GEOD-49114 Murine Schistosoma-Induced Pulmonary Hypertension: RNA-seq Data RNA-seq of coding RNA Mus musculus 16 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49114/E-GEOD-49114.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49114/ E-GEOD-49101 Identification of human nephron progenitors capable of generation of kidney structures and functional repair of chronic renal disease transcription profiling by array Homo sapiens 2 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49101/E-GEOD-49101.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49101/E-GEOD-49101.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49101/ E-GEOD-49100 Activation of a NCAM1 expressing progenitor cell population in adult human kidney epithelia transcription profiling by array Homo sapiens 2 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49100/E-GEOD-49100.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49100/E-GEOD-49100.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49100/ E-GEOD-49082 Genomic alteration in MRC5-derived induced pluripotent stem (MRC5-iPS) cell line, Tic genotyping by array, comparative genomic hybridization by array Homo sapiens 4 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49082/E-GEOD-49082.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49082/ E-GEOD-49080 Profiling of circadian genes expressed in the uterus endometrial stromal cells of pregnant rats as revealed by DNA microarray coupled with RNA interference transcription profiling by array Rattus norvegicus 12 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49080/E-GEOD-49080.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49080/E-GEOD-49080.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49080/ E-GEOD-49077 Transcriptome analysis of the D3 mouse embryonic stem cell line in comparison to the MIN6 pancreatic beta-cell insulinoma cell line transcription profiling by array Mus musculus 6 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49077/E-GEOD-49077.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49077/ E-GEOD-49076 Transcriptional profiling of Salmonella typhimurium in the ceca of gnotobiotic mice transcription profiling by array Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 8 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49076/E-GEOD-49076.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49076/E-GEOD-49076.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49076/ E-GEOD-49075 Expression data from white adipose tissue of adult mice with mutations in Regulator of sex-limitation genes transcription profiling by array Mus musculus 8 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49075/E-GEOD-49075.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49075/E-GEOD-49075.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49075/ E-GEOD-47697 ETV4 promotes metastasis in response to combined activation of PI3kinase and RAS signaling in a mouse model of advanced prostate cancer transcription profiling by array Mus musculus 21 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47697/E-GEOD-47697.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47697/ E-GEOD-46491 The glycolytic and gluconeogenic transcriptome of Pseudomonas putida KT2440 RNA-seq of coding RNA Pseudomonas putida KT2440 4 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46491/E-GEOD-46491.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46491/ E-GEOD-44386 NSun2-mediated cytosine-5 methylation in Vault non-coding RNA determines its processing into small RNAs other, RNA-seq of coding RNA Homo sapiens 14 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44386/E-GEOD-44386.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44386/ E-GEOD-44385 NSun2-mediated cytosine-5 methylation in Vault non-coding RNA determines its processing into small RNAs [iCLIP] other, RNA-seq of coding RNA Homo sapiens 6 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44385/E-GEOD-44385.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44385/ E-GEOD-44384 NSun2-mediated cytosine-5 methylation in Vault non-coding RNA determines its processing into small RNAs [RNA-seq] RNA-seq of coding RNA Homo sapiens 8 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44384/E-GEOD-44384.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44384/ E-GEOD-42292 The Antarctic Krill Euphausia superba Shows Diurnal Cycles of Transcription under Natural Conditions. transcription profiling by array Euphausia superba 20 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42292/E-GEOD-42292.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42292/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42292/ E-GEOD-42284 Full genome expression profiling of primary colorectal cancer (CRC) transcription profiling by array Homo sapiens 188 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42284/E-GEOD-42284.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42284/E-GEOD-42284.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42284/ E-GEOD-41812 Gene expression profile of mutated and wild-type PMF CD34+ cells transcription profiling by array Homo sapiens 20 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41812/E-GEOD-41812.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41812/E-GEOD-41812.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41812/ E-GEOD-39606 Gene expression data in CD4+ and CD8+ cells in sarcoidosis patients following antimycobacterial therapy transcription profiling by array Homo sapiens 20 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39606/E-GEOD-39606.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39606/E-GEOD-39606.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39606/ E-GEOD-23394 Expression data from human NHL cell lines treated with agonistic antibodies transcription profiling by array Homo sapiens 96 2013-07-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23394/E-GEOD-23394.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23394/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23394/ E-MTAB-1559 Comparative genomic hybridization by array of male mouse liver cells to investigate copy number status comparative genomic hybridization by array Mus musculus 15 2013-07-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1559/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1559/ E-MTAB-1405 RNA-seq of coding RNA of ten porcine tissues including four brain tissues from two boars to gain an understanding of the variations in transcriptional profiles of these tissues RNA-seq of coding RNA Sus scrofa 100 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1405/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1405/ E-GEOD-49095 The role of Dichaete in transcriptional regulation during Drosophila embryonic development transcription profiling by array, ChIP-chip by tiling array Drosophila melanogaster 30 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49095/E-GEOD-49095.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49095/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49095/ E-GEOD-49094 The role of Dichaete in transcriptional regulation the of Drosophila midline [simgal4] transcription profiling by array Drosophila melanogaster 12 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49094/E-GEOD-49094.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49094/E-GEOD-49094.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49094/ E-GEOD-49071 The role of Dichaete in transcriptional regulation the of Drosophila midline [prosGal4] transcription profiling by array Drosophila melanogaster 11 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49071/E-GEOD-49071.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49071/E-GEOD-49071.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49071/ E-GEOD-49069 The role of Dichaete in transcriptional regulation of Drosophila embryogenesis transcription profiling by array Drosophila melanogaster 4 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49069/E-GEOD-49069.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49069/E-GEOD-49069.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49069/ E-GEOD-49068 HepG2 treated with two Polycyclic Aromatic Hydrocarbons (benzo[a]anthracene & benzo[k]fluoranthene) transcription profiling by array Homo sapiens 4 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49068/E-GEOD-49068.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49068/E-GEOD-49068.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49068/ E-GEOD-49013 DamID experiment looking at Dichaete-bound regions in 2-7h old Drosophila embryos ChIP-chip by tiling array Drosophila melanogaster 3 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49013/E-GEOD-49013.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49013/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49013/ E-GEOD-48252 Inducing pluripotency from mouse somatic cells by small-molecule compounds [RNA-Seq] RNA-seq of coding RNA Mus musculus 13 2013-07-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48252/ E-GEOD-48243 Inducing pluripotency from mouse somatic cells by small-molecule compounds transcription profiling by array, comparative genomic hybridization by array, RNA-seq of coding RNA Mus musculus 46 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48243/E-GEOD-48243.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48243/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48243/ E-GEOD-48231 CGH analysis of chemical induced pluripotent stem cells comparative genomic hybridization by array Mus musculus 3 2013-07-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48231/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48231/ E-GEOD-48201 Inducing pluripotency from mouse somatic cells by small-molecule compounds [Phalanx Mouse OneArray] transcription profiling by array Mus musculus 30 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48201/E-GEOD-48201.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48201/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48201/ E-GEOD-47775 Piriformospora indica on Arabidopsis and barley root material transcription profiling by array Piriformospora indica 12 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47775/E-GEOD-47775.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47775/E-GEOD-47775.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47775/ E-GEOD-47485 H3K27me3 is maintained at a reduced level in Suz12(Bgal/Bgal) ESCs ChIP-seq, RNA-seq of coding RNA Mus musculus 5 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47485/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47485/ E-GEOD-47484 H3K27me3 is maintained at a reduced level in Suz12(Bgal/Bgal) ESCs [RNA-Seq] RNA-seq of coding RNA Mus musculus 2 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47484/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47484/ E-GEOD-47483 H3K27me3 is maintained at a reduced level in Suz12(Bgal/Bgal) ESCs [ChIP-Seq] ChIP-seq Mus musculus 3 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47483/E-GEOD-47483.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47483/ E-GEOD-46974 IkB-like protein NFKBIZ regulates NF-kB signaling and is critical for survival of ABC DLBCL transcription profiling by array Homo sapiens 32 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46974/E-GEOD-46974.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46974/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46974/ E-GEOD-46973 IkB-like protein NFKBIZ regulates NF-kB signaling and is critical for survival of ABC DLBCL (MALT inhibition) transcription profiling by array Homo sapiens 4 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46973/E-GEOD-46973.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46973/E-GEOD-46973.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46973/ E-GEOD-46972 IkB-like protein NFKBIZ regulates NF-kB signaling and is critical for survival of ABC DLBCL (MLN inhibition) transcription profiling by array Homo sapiens 12 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46972/E-GEOD-46972.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46972/E-GEOD-46972.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46972/ E-GEOD-46971 IkB-like protein NFKBIZ regulates NF-kB signaling and is critical for survival of ABC DLBCL (NFKBIZ inhibition) transcription profiling by array Homo sapiens 16 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46971/E-GEOD-46971.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46971/E-GEOD-46971.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46971/ E-GEOD-46909 Expression data from human Jurkat T cells exposed to 31 compounds transcription profiling by array Homo sapiens 128 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46909/E-GEOD-46909.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46909/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46909/ E-GEOD-46564 Dose-dependent dual roles of PDGF-BB?PDGFR-? in vascular remodeling and opposing effects of anti-PDGF drug-induced metastasis transcription profiling by array Mus musculus 6 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46564/E-GEOD-46564.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46564/E-GEOD-46564.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46564/ E-GEOD-46256 RNA-seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression RNA-seq of coding RNA Moraxella catarrhalis O35E 6 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46256/E-GEOD-46256.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46256/ E-GEOD-45669 RNA-sequencing of the human milk fat layer during colostrum, transitional, and mature stages of lactation RNA-seq of coding RNA Homo sapiens 16 2013-07-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45669/ E-GEOD-43352 The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis transcription profiling by SAGE, RNA-seq of coding RNA Nasonia vitripennis 16 2013-07-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43352/ E-GEOD-42949 Identification of p130Cas/ErbB2-dependent invasive signatures in transformed mammary epithelial cells transcription profiling by array Homo sapiens 10 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42949/E-GEOD-42949.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42949/E-GEOD-42949.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42949/ E-GEOD-42564 Gene expression analysis of lung fibroblasts in bleomycin-induced pulmonary fibrosis RNA-seq of coding RNA Mus musculus 2 2013-07-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42564/ E-GEOD-42499 comparison of the transcriptome of the conditional afpig-a mutant and the wild-type transcription profiling by array Aspergillus fumigatus 8 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42499/E-GEOD-42499.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42499/E-GEOD-42499.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42499/ E-GEOD-41975 Avoiding chromosome pathology when replication forks collide other Escherichia coli 33 2013-07-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41975/ E-GEOD-41178 Whole genome profile of SWNCT and MWCNT vs. asbestos subchronic exposures to human small airway epithelial cells transcription profiling by array Homo sapiens 18 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41178/E-GEOD-41178.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41178/E-GEOD-41178.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41178/ E-GEOD-40391 Identification of RpoE2 target genes in Sinorhizobium meliloti transcription profiling by array Sinorhizobium meliloti 6 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40391/E-GEOD-40391.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40391/E-GEOD-40391.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40391/ E-GEOD-39337 Distinct genetic alterations occur in ovarian tumor cells selected for combined resistance to carboplatin and docetaxel transcription profiling by array Homo sapiens 2 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39337/E-GEOD-39337.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39337/E-GEOD-39337.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39337/ E-GEOD-38419 miRNA profiles of Wilms tumor patients and controls transcription profiling by array Homo sapiens 42 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38419/E-GEOD-38419.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38419/ E-GEOD-37618 Glucocorticoid-Dependent Hippocampal Transcriptome in Male Rats: Pathway-Specific Alterations with Aging transcription profiling by array Rattus norvegicus 39 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37618/E-GEOD-37618.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37618/E-GEOD-37618.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37618/ E-GEOD-36601 Yeast under physiological changes of stress adaptation and stress recovery transcription profiling by array, ChIP-chip by tiling array Saccharomyces cerevisiae 30 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36601/E-GEOD-36601.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36601/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36601/ E-GEOD-36600 Genome-wide enrichment of Gcn5 and H3K18/H4K16 acetylation under physiological change of stress adaptation and stress recovery ChIP-chip by tiling array Saccharomyces cerevisiae 20 2013-07-22 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36600/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36600/ E-GEOD-36599 Gene expression profile in yeast under physiological changes of stress adaptation and stress recovery transcription profiling by array Saccharomyces cerevisiae 10 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36599/E-GEOD-36599.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36599/E-GEOD-36599.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36599/ E-GEOD-36369 DNA methylation contributes to natural human variation methylation profiling by array, unknown experiment type Homo sapiens, Pan troglodytes, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus 322 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36369/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36369/ E-GEOD-35562 Differentiated Truncation and Uridylation Patterns of miRNAs in Arabidopsis and Rice hen1 Mutants Suggest miRNAs May Re-program RISC RNA-seq of non coding RNA Arabidopsis thaliana, Oryza sativa, Zea mays 33 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35562/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35562/ E-GEOD-34899 Autotoxicity mechanism of Oryza Sativa: Microarray analysis of rice plants in response to allelochemical ferulic acid transcription profiling by array Oryza sativa 6 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34899/E-GEOD-34899.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34899/E-GEOD-34899.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34899/ E-GEOD-30910 AtbZIP16 integrates light and hormone signaling pathways to regulate Arabidopsis early seedling development transcription profiling by array Arabidopsis thaliana 12 2013-07-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30910/E-GEOD-30910.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30910/E-GEOD-30910.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30910/ E-ERAD-171 RNA-seq of Dnmt3a/3b conditional knock-out mice RNA-seq of coding RNA Mus musculus 20 2013-07-22 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-171/ E-MEXP-3928 Transcription profiling by array of the effects of HSFA1b over-expression in Arabidopsis thaliana transcription profiling by array Arabidopsis thaliana 4 2013-07-21 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3928/E-MEXP-3928.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3928/ E-GEOD-46154 Microarray gene expression profiling of isolated class I and class IV Drosophila dendritic arborization sensory neurons transcription profiling by array Drosophila melanogaster 7 2013-07-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46154/E-GEOD-46154.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46154/E-GEOD-46154.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46154/ E-GEOD-45853 Tight coordination of protein translation and heat shock factor 1 activation supports the anabolic malignant state ChIP-seq, transcription profiling by array Homo sapiens 33 2013-07-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45853/E-GEOD-45853.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45853/E-GEOD-45853.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45853/ E-GEOD-45852 Tight coordination of protein translation and heat shock factor 1 activation supports the anabolic malignant state [ChIP-Seq] ChIP-seq Homo sapiens 21 2013-07-21 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45852/ E-GEOD-45851 Tight coordination of protein translation and heat shock factor 1 activation supports the anabolic malignant state [Gene Expression Data] transcription profiling by array Homo sapiens 12 2013-07-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45851/E-GEOD-45851.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45851/E-GEOD-45851.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45851/ E-GEOD-38991 Genome-wide DNA methylation maps of Arabidopsis thaliana in two seasons methylation profiling by high throughput sequencing Arabidopsis thaliana 4 2013-07-21 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38991/ E-GEOD-49056 Listeria monocytogenes Sigma B, but not PrfA, shows strain specific contributions to growth under salt stress, and prolongated lag phase of a sigB null mutant across strains transcription profiling by array Listeria monocytogenes 1 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49056/E-GEOD-49056.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49056/E-GEOD-49056.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49056/ E-GEOD-49048 Investigation of Alterations in Gene Expression in the Retina Induced by Intravitreal Injection of titanium dioxide nanoparticles transcription profiling by array Mus musculus 6 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49048/E-GEOD-49048.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49048/E-GEOD-49048.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49048/ E-GEOD-49042 Changes in Gene Expression within the Extended Amygdala Following Binge-Like Alcohol Drinking by Adolescent Alcohol-Preferring (P) Rats transcription profiling by array Rattus norvegicus 40 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49042/E-GEOD-49042.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49042/E-GEOD-49042.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49042/ E-GEOD-49041 Gene expression data from brain nucleus accumbens shell (Acb-sh) following binge-like alcohol drinking by adolescent alcohol-preferring rats transcription profiling by array Rattus norvegicus 20 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49041/E-GEOD-49041.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49041/E-GEOD-49041.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49041/ E-GEOD-49040 Gene expression data from brain central nucleus of amygdala (CeA) following binge-like alcohol drinking by adolescent alcohol-preferring rats transcription profiling by array Rattus norvegicus 20 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49040/E-GEOD-49040.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49040/E-GEOD-49040.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49040/ E-GEOD-49035 De novo sequencing of circulating microRNAs in locally advanced breast cancer RNA-seq of non coding RNA Homo sapiens 42 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49035/E-GEOD-49035.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49035/ E-GEOD-48997 Expression data in wt or mutant Drosophila melanogaster embryos transcription profiling by array Drosophila melanogaster 15 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48997/E-GEOD-48997.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48997/E-GEOD-48997.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48997/ E-GEOD-48898 Unraveling the molecular basis of temperature-dependent genetic regulation in Penicillium marneffei RNA-seq of coding RNA Talaromyces marneffei PM1 4 2013-07-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48898/ E-GEOD-48319 The transcriptomic profile of peripheral blood nuclear cells in dogs with heart failure transcription profiling by array Canis lupus familiaris 52 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48319/E-GEOD-48319.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48319/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48319/ E-GEOD-42850 Heterochromatin state in fission yeast Schizosaccharomyces pombe ChIP-seq, RNA-seq of non coding RNA Schizosaccharomyces pombe 11 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42850/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42850/ E-GEOD-42849 Small RNA expression in swi6 mutants or dcr1 delta fission yeast Schizosaccharomyces pombe RNA-seq of non coding RNA Schizosaccharomyces pombe 3 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42849/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42849/ E-GEOD-42848 Genome wide map of heterochromatin state in fission yeast Schizosaccharomyces pombe ChIP-seq Schizosaccharomyces pombe 8 2013-07-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42848/ E-GEOD-40386 SChLAP-1, a long non-coding RNA, antagonizes the SWI/SNF complex and coordinates aggressive prostate cancer. transcription profiling by array Homo sapiens 28 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40386/E-GEOD-40386.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40386/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40386/ E-GEOD-40385 Overexpression of SChLAP1 versus LACZ in RWPE cells transcription profiling by array Homo sapiens 4 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40385/E-GEOD-40385.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40385/E-GEOD-40385.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40385/ E-GEOD-40384 siRNA Knockdown of SWI/SNF complex proteins in prostate cancer cell lines transcription profiling by array Homo sapiens 12 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40384/E-GEOD-40384.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40384/E-GEOD-40384.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40384/ E-GEOD-40383 Prostate cancer cell lines: non-targeting siRNA versus SChLAP1-siRNA treated transcription profiling by array Homo sapiens 12 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40383/E-GEOD-40383.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40383/E-GEOD-40383.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40383/ E-GEOD-39520 Continuous gene expression profile of leaf throughout the entire growth of rice in 2010 transcription profiling by array Oryza sativa Japonica Group 17 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39520/E-GEOD-39520.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39520/E-GEOD-39520.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39520/ E-GEOD-39122 Gene expression-based, inflammatory response prediction by bronchial epithelial cell line treated with signal peptide of eosinophil cationic protein transcription profiling by array Homo sapiens 8 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39122/E-GEOD-39122.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39122/E-GEOD-39122.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39122/ E-GEOD-22247 The mRNA levels of CD133 positive and CD133 negative cells after radiation exposure transcription profiling by array Homo sapiens 12 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22247/E-GEOD-22247.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22247/ E-GEOD-19908 Mechanistic information on perfluorooctanoic acid (PFOA) exposure in zebrafish (Danio rerio) transcription profiling by array Danio rerio 24 2013-07-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19908/E-GEOD-19908.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19908/E-GEOD-19908.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19908/ E-MTAB-1702 RNA-seq of coding RNA in left ventricles from BN and SHR rats RNA-seq of coding RNA Rattus norvegicus 8 2013-07-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1702/ E-GEOD-49045 Genome-wide SNP analysis of the Systemic Capillary Leak Syndrome (Clarkson disease) genotyping by array Homo sapiens 30 2013-07-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49045/E-GEOD-49045.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49045/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49045/ E-GEOD-49007 Gene expression profiles of dental follicle cells after seven days of ostoeogenic differentiation transcription profiling by array Homo sapiens 4 2013-07-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49007/E-GEOD-49007.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49007/E-GEOD-49007.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49007/ E-GEOD-49003 Gene expression analysis of metastatic and non-metastatic osteosarcoma cell lines transcription profiling by array Homo sapiens 12 2013-07-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49003/E-GEOD-49003.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49003/ E-GEOD-48981 RNA profiling of Synechococcus sp. PCC 7002 exposed to acrylic acid RNA-seq of coding RNA Synechococcus sp. PCC 7942 4 2013-07-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48981/ E-GEOD-48980 Profiling gene expression of ETV2-induced vascular endothelial cells (ETVECs) transcription profiling by array Homo sapiens 8 2013-07-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48980/E-GEOD-48980.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48980/E-GEOD-48980.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48980/ E-GEOD-48486 Reprogramming fibroblasts into bi-potential hepatic stem cells by defined factors transcription profiling by array Mus musculus 9 2013-07-19 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48486/E-GEOD-48486.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48486/ E-GEOD-43601 Transcriptional signature of progesterone-induced germinal vesicle breakdown in the fathead minnow ovary (Pimephales promelas) transcription profiling by array Pimephales promelas 7 2013-07-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43601/E-GEOD-43601.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43601/E-GEOD-43601.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43601/ E-GEOD-29272 Affymetrix gene expression array data for cardia and non-cardia gastric cancer samples transcription profiling by array Homo sapiens 268 2013-07-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29272/E-GEOD-29272.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29272/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29272/ E-MTAB-1669 CLIP-seq of Drosophila melanogaster clone 8 cells shows that two enzymes in the Male-Specific Lethal complex, MLE RNA helicase and MSL2 ubiquitin ligase, bind evolutionarily conserved domains containing tandem stem-loops in roX1 and roX2 RNAs in vivo CLIP-Seq Drosophila melanogaster 6 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1669/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1669/ E-GEOD-49015 Gene expression profiles in islets from pancreatectomized mice transcription profiling by array Mus musculus 2 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49015/E-GEOD-49015.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49015/E-GEOD-49015.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49015/ E-GEOD-49005 Multiscale Gene Networks Dissect the Complexity of Breast Cancer transcription profiling by array Homo sapiens 12 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49005/E-GEOD-49005.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49005/ E-GEOD-48998 Expression data of TAGLN-overexpressing RKO human colon cancer cells transcription profiling by array Homo sapiens 6 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48998/E-GEOD-48998.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48998/E-GEOD-48998.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48998/ E-GEOD-48989 Cyclin D1 determines estrogen dependent signaling in human breast cancer cell line MCF7 transcription profiling by array Homo sapiens 8 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48989/E-GEOD-48989.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48989/E-GEOD-48989.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48989/ E-GEOD-48963 Targeting H3K4 methylation as a therapeutic strategy for Huntington's disease ChIP-seq, RNA-seq of coding RNA Mus musculus 32 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48963/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48963/ E-GEOD-48962 Targeting H3K4 methylation as a therapeutic strategy for Huntington's disease (RNA-seq) RNA-seq of coding RNA Mus musculus 24 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48962/E-GEOD-48962.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48962/ E-GEOD-48960 Targeting H3K4 methylation as a therapeutic strategy for Huntington's disease (ChIP-seq) ChIP-seq Mus musculus 8 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48960/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48960/ E-GEOD-48956 Wild-type yeast vs Desl1/Desl2 mutant strain transcription profiling by array Saccharomyces cerevisiae 4 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48956/E-GEOD-48956.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48956/E-GEOD-48956.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48956/ E-GEOD-48955 Psychotropic drug-induced gene expression alterations in mouse striatum transcription profiling by array Mus musculus 216 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48955/E-GEOD-48955.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48955/ E-GEOD-48954 Psychotropic drug-induced gene expression alterations in mouse striatum II transcription profiling by array Mus musculus 156 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48954/E-GEOD-48954.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48954/ E-GEOD-48951 Psychotropic drug-induced gene expression alterations in mouse striatum I transcription profiling by array Mus musculus 60 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48951/E-GEOD-48951.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48951/ E-GEOD-48950 Med1 overexpression induces cell proliferation transcription profiling by array Mus musculus 4 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48950/E-GEOD-48950.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48950/ E-GEOD-48945 Effects of 17?-ethinylestradiol (EE2) on molecular signaling cascades in mummichog (Fundulus heteroclitus) transcription profiling by array Fundulus heteroclitus 15 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48945/E-GEOD-48945.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48945/E-GEOD-48945.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48945/ E-GEOD-48944 Gene expression profiles of Chronic kidney disease transcription profiling by array Homo sapiens 25 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48944/E-GEOD-48944.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48944/E-GEOD-48944.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48944/ E-GEOD-41226 Expression data from G9a knockdown ovarian cancer cell transcription profiling by array Homo sapiens 3 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41226/E-GEOD-41226.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41226/E-GEOD-41226.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41226/ E-GEOD-34253 Dietary heme modulates microbiota and mucosa of mouse colon without significant host-microbe cross talk transcription profiling by array Mus musculus 2 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34253/E-GEOD-34253.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34253/E-GEOD-34253.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34253/ E-GEOD-28901 Identification of GLI1 direct target genes in human pancreatic cancer cell line Panc-1 transcription profiling by array Homo sapiens 4 2013-07-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28901/E-GEOD-28901.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28901/E-GEOD-28901.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28901/ E-MTAB-1664 RNA-seq of coding RNA of moss Funaria hygrometrica samples from three haploid (gametophyte) stages and three diploid (sporophyte) stages RNA-seq of coding RNA Funaria hygrometrica 6 2013-07-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1664/ E-MTAB-1600 ChIP-seq of AP2gamma transcription factor in mouse passage 19 embryonal carcinoma cell line to study primordial germ cell specification ChIP-seq Mus musculus 2 2013-07-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1600/ E-MTAB-1599 ChIP-seq of BLIMP1 transcription factor in mouse passage 19 embryonal carcinoma cell line to study primordial germ cell specification ChIP-seq Mus musculus 4 2013-07-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1599/ E-MTAB-931 Transcription profiling by array of Schizosaccharomyces pombe to compared wild type vs Upf1-delta cells under normal growth conditions transcription profiling by array Schizosaccharomyces pombe 2 2013-07-17 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-931/E-MTAB-931.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-931/ E-MTAB-909 Ribonucleoprotein immunoprecipitation microarray (RIp-chip) study using the RNA-binding protein Upf1 from the fission Schizosaccaromyces pombe ChIP-chip by array Schizosaccharomyces pombe 3 2013-07-17 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-909/E-MTAB-909.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-909/ E-MEXP-3921 Transcription profiling by array of photoreceptor precursors derived from 3D cultures of embryonic stem cells mature and integrated in degenerate retina transcription profiling by array Mus musculus 9 2013-07-17 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3921/E-MEXP-3921.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3921/ E-GEOD-48996 Genome-wide maps of Nup98 binding in human embryonic stem cells, neural progenitors, neuron cells and lung fibroblasts ChIP-seq Homo sapiens 8 2013-07-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48996/ E-GEOD-48943 Gene expression profiles of Hyalella azteca populations with different pyrethroid sensitivities transcription profiling by array Hyalella azteca 20 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48943/E-GEOD-48943.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48943/E-GEOD-48943.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48943/ E-GEOD-48940 ssa_1972-null mutant of Streptococcus sanguinis SK36 transcription profiling by array Streptococcus sanguinis SK36 3 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48940/E-GEOD-48940.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48940/E-GEOD-48940.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48940/ E-GEOD-48931 Master regulators of FGFR2 signalling and breast cancer risk ChIP-seq, transcription profiling by array Homo sapiens 266 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48931/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48931/ E-GEOD-48930 Genome-wide mapping of SPDEF and ESR1 binding in MCF-7 cells (ChIP-seq) ChIP-seq Homo sapiens 6 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48930/E-GEOD-48930.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48930/ E-GEOD-48928 Knockdown of breast cancer master regulators: siRNA targeting PTTG1 and SPDEF in MCF-7 cells. transcription profiling by array Homo sapiens 18 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48928/E-GEOD-48928.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48928/ E-GEOD-48927 Over-expression of FGFR2b from a tetracycline-inducible expression vector transcription profiling by array Homo sapiens 125 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48927/E-GEOD-48927.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48927/ E-GEOD-48926 Expression data from C33-A cell line transcription profiling by array Homo sapiens 3 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48926/E-GEOD-48926.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48926/E-GEOD-48926.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48926/ E-GEOD-48925 Activation of FGFR2-kinase domain (iF2 construct) transcription profiling by array Homo sapiens 71 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48925/E-GEOD-48925.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48925/ E-GEOD-48924 Stimulation of endogenous FGFR1b and FGFR2b transcription profiling by array Homo sapiens 46 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48924/E-GEOD-48924.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48924/ E-GEOD-48922 MicroRNA response to Snail overexpression in lung cancer cell lines transcription profiling by array Homo sapiens 8 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48922/E-GEOD-48922.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48922/ E-GEOD-48915 Expression data from tissues during somatic embryogenesis in Arabidopsis transcription profiling by array Arabidopsis thaliana 16 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48915/E-GEOD-48915.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48915/E-GEOD-48915.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48915/ E-GEOD-48875 Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein transcription profiling by tiling array, ChIP-chip by tiling array Human Herpesvirus 5 33 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48875/E-GEOD-48875.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48875/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48875/ E-GEOD-48539 Gene expression profiling of LT-HSCs and ST-HSCs conditionally expressing MLL-ENL transcription profiling by array Mus musculus 4 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48539/E-GEOD-48539.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48539/E-GEOD-48539.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48539/ E-GEOD-47721 Transcriptomic profiling of L-rhamnose utilization in Lmo0753 deletion mutant of Listeria monocytogenes EGDe from human foodborne outbreak associated lineage LII RNA-seq of coding RNA Listeria monocytogenes 4 2013-07-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47721/ E-GEOD-44586 Genome-wide nucleosome, TFIIIC and TFIIIB occupancies in Saccharomyces cerevisiae ChIP-seq Saccharomyces cerevisiae 12 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44586/E-GEOD-44586.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44586/ E-GEOD-43629 New rapid scheme for distinguishing subspecies of the Mycobacterium abscessus group and identification of Mycobacterium massiliense with inducible clarithromycin resistance comparative genomic hybridization by array Mycobacterium abscessus, Mycobacterium abscessus subsp. bolletii 5 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43629/E-GEOD-43629.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43629/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43629/ E-GEOD-43162 Expression data from poplar roots under nitrogen limitation transcription profiling by array Populus tremula x Populus alba 26 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43162/E-GEOD-43162.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43162/E-GEOD-43162.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43162/ E-GEOD-42820 Gene expression changes resulting from attenuation of Dicer activity transcription profiling by array Mus musculus 12 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42820/E-GEOD-42820.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42820/E-GEOD-42820.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42820/ E-GEOD-40207 Expression data from mitochondrial protease ClpP knock-out mice. transcription profiling by array Mus musculus 30 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40207/E-GEOD-40207.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40207/E-GEOD-40207.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40207/ E-GEOD-39731 Expression arrays of KRASG12D rhabdomyosarcoma models in zebrafish transcription profiling by array Danio rerio 32 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39731/E-GEOD-39731.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39731/E-GEOD-39731.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39731/ E-GEOD-34987 Genome-wide analysis of GW3965-responsive genes in 4 different breast cancer cell lines, MCF-7, T-47D, SK-BR-3, and MDA-MB-231 transcription profiling by array Homo sapiens 24 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34987/E-GEOD-34987.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34987/ E-GEOD-31305 Expression data of myeloma CD138+ and CD138- populations transcription profiling by array Homo sapiens 8 2013-07-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31305/E-GEOD-31305.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31305/E-GEOD-31305.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31305/ E-MEXP-3516 Transcription profiling by array to compare six variants of human HEK293 cell lines at the exon-level (extended set) and gene-level (core set) transcription profiling by array Homo sapiens 18 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3516/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3516/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3516/ E-GEOD-48936 Murine Schistosoma-Induced Pulmonary Hypertension: Microarray Data transcription profiling by array Mus musculus 6 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48936/E-GEOD-48936.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48936/E-GEOD-48936.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48936/ E-GEOD-48934 MicroRNA profiling of brain metastasis competent cell-derived exosomes transcription profiling by RT-PCR Homo sapiens 6 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48934/E-GEOD-48934.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48934/ E-GEOD-48894 Genome-wide analysis of transcription factor PfNF-YB in Plasmodium falciparum. ChIP-chip by tiling array Plasmodium falciparum 2 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48894/E-GEOD-48894.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48894/E-GEOD-48894.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48894/ E-GEOD-48890 Lethal dissemination of H5N1 influenza virus is associated with dysregulation of inflammation and lipoxin signaling in a mouse model of infection transcription profiling by array Mus musculus 60 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48890/E-GEOD-48890.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48890/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48890/ E-GEOD-48887 Saccharopolyspora erythraea RNA-seq RNA-seq of coding RNA, RNA-seq of non coding RNA Saccharopolyspora erythraea 2 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48887/E-GEOD-48887.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48887/ E-GEOD-48884 Cyclin D1 determines estrogen depependent signaling in mouse mammary gland. transcription profiling by array Mus musculus 12 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48884/E-GEOD-48884.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48884/E-GEOD-48884.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48884/ E-GEOD-48882 Expression profiling of BMP9-stimulated mesenchymal stem cells transcription profiling by array Mus musculus 6 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48882/E-GEOD-48882.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48882/E-GEOD-48882.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48882/ E-GEOD-48870 High throughput sequencing of immunoglobulin (Ig) heavy (IgH) and light (IgL) chain repertoires RNA-seq of coding RNA Mus musculus 40 2013-07-16 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48870/ E-GEOD-47810 Aspergillus nidulans strains TNO2a3, ?snfA and ?schA grown on avicel as sole carbon source transcription profiling by array Emericella nidulans 16 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47810/E-GEOD-47810.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47810/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47810/ E-GEOD-47686 Gene expression profiles of Hodgkin?s lymphoma cells transcription profiling by array Homo sapiens 3 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47686/E-GEOD-47686.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47686/E-GEOD-47686.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47686/ E-GEOD-47682 Affymetrix SNP array data for acute myeloid leukemia (AML) and myelodysplastic syndromes (MDS) genotyping by array, comparative genomic hybridization by array Homo sapiens 163 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47682/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47682/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47682/ E-GEOD-47641 Expression analysis of mock- or RAD21-transduced Kasumi1 cells transcription profiling by array Homo sapiens 12 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47641/E-GEOD-47641.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47641/E-GEOD-47641.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47641/ E-GEOD-47627 Novel insights into DNA methylation features in spermatozoa: stability and peculiatities methylation profiling by array Homo sapiens 28 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47627/E-GEOD-47627.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47627/ E-GEOD-45691 Transcriptomics of lateral root initiation in Maize transcription profiling by array Zea mays 30 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45691/E-GEOD-45691.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45691/ E-GEOD-41212 Arabidopsis thaliana seed germination timecourse transcription profiling by array Arabidopsis thaliana 116 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41212/E-GEOD-41212.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41212/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41212/ E-GEOD-40641 Dissecting the grey zone between follicular lymphoma and nodal marginal zone lymphoma using morphological and genetic features comparative genomic hybridization by array Homo sapiens 56 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40641/E-GEOD-40641.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40641/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40641/ E-GEOD-39539 Fibrillar collagen implicated in pregnancy-induced protection of mammary cancer transcription profiling by array Mus musculus 9 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39539/E-GEOD-39539.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39539/E-GEOD-39539.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39539/ E-GEOD-38588 Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition transcription profiling by array Sus scrofa 10 2013-07-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38588/E-GEOD-38588.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38588/E-GEOD-38588.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38588/ E-MTAB-1730 RNA-seq transcript assembly evaluation RNA-seq of coding RNA Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens 12 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1730/ E-MTAB-1728 RNA-seq read alignment evaluation RNA-seq of coding RNA Homo sapiens, Mus musculus 22 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1728/ E-MTAB-1100 Transcription profiling by array of Streptococcus agalactiae strain 2603 V/R and isogenic Delta_csrRS mutant grown in the presence or in the absence of glucose transcription profiling by array Streptococcus agalactiae 8 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1100/E-MTAB-1100.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1100/E-MTAB-1100.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1100/ E-MEXP-3682 Transcription profiling by array of siRNA silencing of GABPA in MCF10A cells transcription profiling by array Homo sapiens 6 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3682/E-MEXP-3682.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3682/E-MEXP-3682.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3682/ E-GEOD-48888 Global signatures of protein binding on structural RNAs in Saccharomyces cerevisiae RNA-seq of coding RNA Saccharomyces cerevisiae 10 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48888/ E-GEOD-48881 Comparison of foliage of diploid potato clones 07506-01 and 12120-03 transcription profiling by array Solanum tuberosum 4 2013-07-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48881/E-GEOD-48881.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48881/ E-GEOD-48876 Expression data from human acute lymphoblastic leukemia cell line SupB15 and its drug resistant subpopulations SupB15-MR transcription profiling by array Homo sapiens 3 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48876/E-GEOD-48876.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48876/E-GEOD-48876.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48876/ E-GEOD-48864 Expression analysis of Aspergillus oryzae grown on different carbon sources transcription profiling by array Aspergillus oryzae RIB40 32 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48864/E-GEOD-48864.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48864/E-GEOD-48864.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48864/ E-GEOD-48585 Response of Burkholderia cenocepacia H111 to micro-oxia RNA-seq of coding RNA Burkholderia cenocepacia H111 2 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48585/E-GEOD-48585.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48585/ E-GEOD-48429 Genes Required for and Effects of Inducible Alginate Overproduction by Growth of Pseudomonas aeruginosa on PIAAMV transcription profiling by array Pseudomonas aeruginosa 6 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48429/E-GEOD-48429.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48429/E-GEOD-48429.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48429/ E-GEOD-48388 Adult Murine Interstitial Cells of Cajal (ICC) and Small Intestine (Sm Int) Somatic piRNA-like RNA (pilRNA) RNA-seq of non coding RNA Mus musculus 2 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48388/E-GEOD-48388.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48388/ E-GEOD-48234 A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium RNA-seq of non coding RNA Brachypodium distachyon 4 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48234/E-GEOD-48234.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48234/ E-GEOD-48040 A global profiling of gene expression under cold stress in Brachypodium RNA-seq of coding RNA Brachypodium distachyon 2 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48040/E-GEOD-48040.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48040/ E-GEOD-47684 Recurrent mutations of multiple components of cohesin complex in myeloid neoplasms transcription profiling by array, genotyping by array, comparative genomic hybridization by array Homo sapiens 175 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47684/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47684/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47684/ E-GEOD-47067 In Vivo Endothelial Cell Heterogeneity transcription profiling by array Homo sapiens, Mus musculus 57 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47067/E-GEOD-47067.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47067/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47067/ E-GEOD-46713 Characterization of the starvation response in the Arabidopsis dcl1-9 mutant transcription profiling by array Arabidopsis thaliana 12 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46713/E-GEOD-46713.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46713/E-GEOD-46713.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46713/ E-GEOD-44404 Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 64 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44404/ E-GEOD-44379 Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 4) RNA-seq of coding RNA Homo sapiens 16 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44379/ E-GEOD-44378 Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 3) RNA-seq of coding RNA Homo sapiens 16 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44378/ E-GEOD-44377 Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 2) RNA-seq of coding RNA Homo sapiens 8 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44377/ E-GEOD-44376 Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 1) RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 24 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44376/ E-GEOD-43723 The change of gene expression profile of primary rat hepatocytes after treatment with interferon alpha. transcription profiling by array Rattus norvegicus 12 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43723/E-GEOD-43723.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43723/E-GEOD-43723.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43723/ E-GEOD-43366 Defining the microglia transcriptome during disease progression in ALS transgenic mice RNA-seq of coding RNA Mus musculus 42 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43366/ E-GEOD-42102 Proteomic and transcriptomic responses to thiamethoxam in the Sweetpotato whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae) RNA-seq of coding RNA Bemisia tabaci 2 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42102/E-GEOD-42102.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42102/ E-GEOD-40857 Expression data from mouse optic nerve head after optic nerve crush transcription profiling by array Mus musculus 55 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40857/E-GEOD-40857.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40857/E-GEOD-40857.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40857/ E-GEOD-40853 Meta-analysis of IDH mutant-mediated hypermethylation identifies tissue-specific effectors within a shared pathway in multiple cancers. methylation profiling by array Homo sapiens 51 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40853/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40853/ E-GEOD-39438 Transcriptomic profiling of FAP+ fibroblasts RNA-seq of coding RNA Mus musculus 8 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39438/ E-GEOD-39374 Transcriptomes of K562 cell line RNA-seq of coding RNA Homo sapiens 1 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39374/E-GEOD-39374.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39374/ E-GEOD-39271 Synergistic interactions between CLAMP and MSL complex facilitate Drosophila dosage compensation ChIP-seq, RNA-seq of coding RNA Drosophila melanogaster 15 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39271/E-GEOD-39271.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39271/ E-GEOD-35730 Comparison of arf2, gnc gnl and arf2 gnc gnl transcriptomes transcription profiling by array Arabidopsis thaliana 12 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35730/E-GEOD-35730.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35730/E-GEOD-35730.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35730/ E-GEOD-33340 Gene expression changes in breast epithelial cells surviving treatment with TRAIL (TNF-Related Apoptosis Inducing Ligand) transcription profiling by array Homo sapiens 31 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33340/E-GEOD-33340.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33340/ E-GEOD-30023 A comparative gene expression profiling of spondyloarthropathy and rheumatoid arthritis using oligonucleotide based microarrays transcription profiling by array Homo sapiens 12 2013-07-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30023/E-GEOD-30023.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30023/E-GEOD-30023.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30023/ E-ERAD-165 RNA-seq of mice bone marrow samples to investigate rResponse of myeloid lineage cells to cytokines RNA-seq of coding RNA Mus musculus 144 2013-07-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-165/ E-GEOD-48303 Expression data from aldosterone-producing adenomas (APAs) with a somatic mutation in either KCNJ5, CACNA1D, or ATP1A1 transcription profiling by array Homo sapiens 13 2013-07-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48303/E-GEOD-48303.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48303/E-GEOD-48303.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48303/ E-GEOD-42523 Spatially restricted position-dependent implications of lamin A promoter occupancy on gene activity (expression) transcription profiling by array Homo sapiens 6 2013-07-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42523/E-GEOD-42523.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42523/ E-GEOD-42522 Spatially restricted position-dependent implications of lamin A promoter occupancy on gene activity (ChIPs and MeDips) ChIP-chip by tiling array, methylation profiling by array Homo sapiens 19 2013-07-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42522/E-GEOD-42522.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42522/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42522/ E-GEOD-30700 The Bromodomain protein Brd4 Insulates Chromatin from DNA Damage Signaling through Acetyl-Lysine Binding transcription profiling by array Homo sapiens 4 2013-07-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30700/E-GEOD-30700.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30700/E-GEOD-30700.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30700/ E-MTAB-1708 Transcription profiling by array of whole blood samples taken from citizens of the Augsburg region in the KORA F4 study transcription profiling by array Homo sapiens 993 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1708/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1708/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1708/ E-MTAB-596 ChIP-chip by array of human primary lymphatic endothelials cells to identify the repertoire of FOXC2 binding sites affected by the loss of FOXC2 phosphorylation ChIP-chip by array Homo sapiens 42 2013-07-13 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-596/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-596/ E-GEOD-48842 Expression data from PML4 overexpressing and control K562 cells transcription profiling by array Homo sapiens 2 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48842/E-GEOD-48842.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48842/E-GEOD-48842.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48842/ E-GEOD-48837 Gene expression of fly testes with meiotic arrest from different mutations transcription profiling by array Drosophila melanogaster 13 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48837/E-GEOD-48837.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48837/E-GEOD-48837.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48837/ E-GEOD-48835 aCGH for bile duct cancer comparative genomic hybridization by array Homo sapiens 24 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48835/E-GEOD-48835.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48835/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48835/ E-GEOD-48830 Transcriptional analysis of pre and post excision human induced pluripotent stem cells transcription profiling by array Homo sapiens 8 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48830/E-GEOD-48830.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48830/E-GEOD-48830.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48830/ E-GEOD-48827 Structural basis of a novel Interferon b signaling axis mediated via the ifnar1 receptor transcription profiling by array Mus musculus 12 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48827/E-GEOD-48827.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48827/E-GEOD-48827.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48827/ E-GEOD-48825 CGH array: Sprague-Dawley rat (SDR) vs Hirosaki hairless rat (HHR) comparative genomic hybridization by array Rattus norvegicus 2 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48825/E-GEOD-48825.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48825/E-GEOD-48825.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48825/ E-GEOD-48822 Effect of IUGR on postnatal day 14 pancreatic islets transcription profiling by array Rattus norvegicus 4 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48822/E-GEOD-48822.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48822/E-GEOD-48822.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48822/ E-GEOD-48820 The Microbial Gene Diversity along an Elevation Gradient of the Tibetan Grassland comparative genomic hybridization by array uncultured bacterium 12 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48820/E-GEOD-48820.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48820/ E-GEOD-46899 Cyclodextrin protects podocytes in diabetic kidney disease [HumanHT-12 V4.0 array] transcription profiling by array Homo sapiens 6 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46899/E-GEOD-46899.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46899/ E-GEOD-42895 Loss of MeCP2 function is associated with distinct gene expression changes in the striatum transcription profiling by array Mus musculus 20 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42895/E-GEOD-42895.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42895/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42895/ E-GEOD-42560 Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes transcription profiling by array, ChIP-chip by tiling array, methylation profiling by array Homo sapiens 23 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42560/E-GEOD-42560.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42560/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42560/ E-GEOD-41503 Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos other Drosophila melanogaster 42 2013-07-13 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41503/E-GEOD-41503.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41503/ E-GEOD-48832 Expression from Escherichia coli transcription profiling by array, RNA-seq of coding RNA Escherichia coli, Escherichia coli str. K-12 substr. MG1655 13 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48832/E-GEOD-48832.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48832/E-GEOD-48832.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48832/ E-GEOD-48829 Escherichia coli RNA-Seq RNA-seq of coding RNA Escherichia coli str. K-12 substr. MG1655 9 2013-07-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48829/ E-GEOD-48814 Pseudonocardia dioxanivorans strain CB1190 during growth on THF or succinate transcription profiling by array, unknown experiment type Pseudonocardia dioxanivorans CB1190 6 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48814/E-GEOD-48814.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48814/E-GEOD-48814.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48814/ E-GEOD-48810 Digital gene expression of WT and gi mutant under control and drought conditions in Arabidopsis RNA-seq of coding RNA Arabidopsis thaliana 4 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48810/E-GEOD-48810.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48810/ E-GEOD-48809 The metabolic niche of a prominent sulfate-reducing human gut bacterium other, RNA-seq of coding RNA , Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Clostridium symbiosum, Collinsella aerofaciens ATCC 25986, Desulfovibrio piger GOR1, Escherichia coli str. K-12 substr. MG1655, Eubacterium rectale ATCC 33656, Marvinbryantia formatexigens DSM 14469, Mus musculus 135 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48809/E-GEOD-48809.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48809/ E-GEOD-48808 The metabolic niche of a prominent sulfate-reducing human gut bacterium [3] RNA-seq of coding RNA Mus musculus 8 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48808/E-GEOD-48808.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48808/ E-GEOD-48805 Comparison of gene expression profile in RAG2+ B lineage cells from the small intestinal lamina propria and RAG2+ B lineage cells from the bone marrow transcription profiling by array Mus musculus 6 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48805/E-GEOD-48805.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48805/E-GEOD-48805.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48805/ E-GEOD-48803 Identification of Rat foreskin biomarkers of in utero dibutyl phthalate exposure transcription profiling by array Rattus norvegicus 57 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48803/E-GEOD-48803.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48803/E-GEOD-48803.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48803/ E-GEOD-48802 Identification of Rat foreskin biomarkers of in utero dibutyl phthalate exposure [Illumina] transcription profiling by array Rattus norvegicus 43 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48802/E-GEOD-48802.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48802/ E-GEOD-48792 Expression data from WT and ELK-1 overexpressing stem cells transcription profiling by array Homo sapiens 3 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48792/E-GEOD-48792.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48792/E-GEOD-48792.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48792/ E-GEOD-48791 Decoding the transcriptional program of epidermal cell morphogenesis ChIP-seq Drosophila melanogaster 3 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48791/E-GEOD-48791.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48791/ E-GEOD-48790 Expression data from GTF2i mutated ES cells transcription profiling by array Mus musculus 8 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48790/E-GEOD-48790.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48790/E-GEOD-48790.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48790/ E-GEOD-48788 Ectopic cerebellar cell migration causes maldevelopment of Purkinje cells and abnormal motor behaviour in Cxcr4 null mice transcription profiling by array Mus musculus 15 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48788/E-GEOD-48788.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48788/ E-GEOD-48787 Nogo-B protects mice against lipopolysaccharide-induced acute lung injury transcription profiling by array Mus musculus 12 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48787/E-GEOD-48787.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48787/E-GEOD-48787.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48787/ E-GEOD-48784 Feminized behavior and gene expression in the striatum in a novel mouse model of Klinefelter Syndrome transcription profiling by array Mus musculus 38 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48784/E-GEOD-48784.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48784/ E-GEOD-48783 Feminized behavior and gene expression in the BNST/POA in a novel mouse model of Klinefelter Syndrome transcription profiling by array Mus musculus 31 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48783/E-GEOD-48783.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48783/ E-GEOD-48776 Gene expression from Escherichia coli. transcription profiling by array Escherichia coli 4 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48776/E-GEOD-48776.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48776/E-GEOD-48776.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48776/ E-GEOD-47162 Skin gene expression correlates of severity of interstitial lung disease in systemic sclerosis transcription profiling by array Homo sapiens 59 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47162/E-GEOD-47162.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47162/ E-GEOD-47014 Translating Dosage Compensation to Trisomy 21 transcription profiling by array Homo sapiens 27 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47014/E-GEOD-47014.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47014/E-GEOD-47014.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47014/ E-GEOD-46323 Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose RNA-seq of coding RNA Homo sapiens 2 2013-07-12 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46323/ E-GEOD-44838 Gene expression and methylation profile of breast cancer cells. transcription profiling by array, methylation profiling by array Homo sapiens 52 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44838/E-GEOD-44838.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44838/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44838/ E-GEOD-44837 Gene methylation profile of breast cancer cells. methylation profiling by array Homo sapiens 26 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44837/E-GEOD-44837.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44837/ E-GEOD-44836 Gene expression profile of breast cancer cells. transcription profiling by array Homo sapiens 26 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44836/E-GEOD-44836.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44836/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44836/ E-GEOD-43467 Role of HGF in epithelial-stromal cell interactions during progression from benign breast disease to ductal carcinoma in situ transcription profiling by array Homo sapiens 58 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43467/E-GEOD-43467.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43467/ E-GEOD-41923 Distinct DNA methylomes of 2i and serum mouse ES cells are interconvertible and reflect pre- and post-implantation embryonic states methylation profiling by high throughput sequencing Mus musculus 14 2013-07-12 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41923/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41923/ E-MEXP-3858 Transcription profiling by array of mouse wild-type or Nlrp3 -/- bone marrow-derived dendritic cells with or without monosodium urate crystals treatment transcription profiling by array Mus musculus 12 2013-07-11 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3858/E-MEXP-3858.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3858/ E-GEOD-48804 Differentially expressed genes after inhibition of methylation transcription profiling by array Danio rerio 11 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48804/E-GEOD-48804.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48804/E-GEOD-48804.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48804/ E-GEOD-48781 TLR9 deficiency promotes CD73 expression in T cells and diabetes protection in NOD mice transcription profiling by array Mus musculus 2 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48781/E-GEOD-48781.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48781/ E-GEOD-48761 Expression profiling of skin fibroblast and iPSC from Werner Syndrome transcription profiling by array Homo sapiens 52 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48761/E-GEOD-48761.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48761/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48761/ E-GEOD-48756 Snyder_NFYA-1_GFP_YA ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48756/E-GEOD-48756.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48756/ E-GEOD-48755 Snyder_NFYA-1_GFP_LateEMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48755/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48755/ E-GEOD-48754 Snyder_NFYA-1_GFP_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48754/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48754/ E-GEOD-48753 Snyder_MED-1_GFP_MIDEMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48753/E-GEOD-48753.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48753/ E-GEOD-48752 Snyder_HLH-30_GFP_LateEMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48752/E-GEOD-48752.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48752/ E-GEOD-48751 Snyder_HLH-30_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48751/E-GEOD-48751.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48751/ E-GEOD-48750 Snyder_F23B12.7_GFP_YA ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48750/E-GEOD-48750.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48750/ E-GEOD-48749 Snyder_DVE-1_GFP_LateEMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48749/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48749/ E-GEOD-48748 Snyder_DVE-1_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48748/E-GEOD-48748.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48748/ E-GEOD-48747 Snyder_ZIP-2_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48747/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48747/ E-GEOD-48746 Snyder_ZTF-11_GFP_EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48746/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48746/ E-GEOD-48745 Identification of Transcription Factor MAB-5::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48745/E-GEOD-48745.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48745/ E-GEOD-48744 Snyder_GEI-11_GFP_Emb ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48744/E-GEOD-48744.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48744/ E-GEOD-48743 Snyder_BLMP-1_GFP_Emb ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48743/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48743/ E-GEOD-48742 Identification of Transcription Factor RPC-1::RPC-1 Binding Regions in Young Adults ChIP-seq Caenorhabditis elegans 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48742/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48742/ E-GEOD-48741 Identification of Transcription Factor RPC-1::RPC-1 Binding Regions in Young Adults ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48741/E-GEOD-48741.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48741/ E-GEOD-48740 Identification of Transcription Factor PHA-4::GFP Binding Regions in L4 ChIP-seq Caenorhabditis elegans 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48740/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48740/ E-GEOD-48739 Snyder_LIN-39_GFP_L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48739/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48739/ E-GEOD-48738 Snyder_NHR-67_GFP_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48738/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48738/ E-GEOD-48737 Snyder_FKH-10_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48737/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48737/ E-GEOD-48736 Snyder_FKH-10_GFP_LEMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48736/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48736/ E-GEOD-48735 Snyder_NHR-28_GFP_L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48735/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48735/ E-GEOD-48734 Snyder_NHR-11_GFP_L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48734/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48734/ E-GEOD-48733 Snyder_NHR-11_GFP_LEMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48733/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48733/ E-GEOD-48732 Snyder_NHR-28_GFP_EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48732/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48732/ E-GEOD-48731 Snyder_UNC_62_GFP_EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48731/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48731/ E-GEOD-48730 Snyder_UNC_62_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48730/E-GEOD-48730.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48730/ E-GEOD-48729 Snyder_LIN-39_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48729/E-GEOD-48729.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48729/ E-GEOD-48728 Snyder_LIN-39_GFP_L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48728/E-GEOD-48728.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48728/ E-GEOD-48727 Snyder_NHR-11_GFP_L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48727/E-GEOD-48727.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48727/ E-GEOD-48726 Snyder_NHR-11_GFP_L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48726/E-GEOD-48726.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48726/ E-GEOD-48725 Identification of Transcription Factor NHR-2::GFP Binding Regions in EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48725/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48725/ E-GEOD-48724 Identification of Transcription Factor CEH-39::GFP Binding Regions in EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48724/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48724/ E-GEOD-48723 Identification of Transcription Factor CES-1::GFP Binding Regions in EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48723/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48723/ E-GEOD-48722 Identification of Transcription Factor PAX-1::GFP Binding Regions in EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48722/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48722/ E-GEOD-48721 Identification of Transcription Factor NHR-237::GFP Binding Regions in EMB ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48721/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48721/ E-GEOD-48720 Identification of Transcription Factor NHR-237::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48720/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48720/ E-GEOD-48719 Identification of Transcription Factor NHR-237::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48719/E-GEOD-48719.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48719/ E-GEOD-48718 Identification of Transcription Factor NHR-237::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48718/E-GEOD-48718.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48718/ E-GEOD-48717 Identification of Transcription Factor LSY-2::GFP Binding Regions in Starved ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48717/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48717/ E-GEOD-48716 Identification of Transcription Factor LSY-2::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48716/E-GEOD-48716.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48716/ E-GEOD-48715 Identification of Transcription Factor LSY-2::GFP Binding Regions in Embryo ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48715/E-GEOD-48715.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48715/ E-GEOD-48714 Identification of Transcription Factor ELT-1::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48714/E-GEOD-48714.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48714/ E-GEOD-48713 Identification of Transcription Factor HAM-1::GFP Binding Regions in L4 ChIP-seq Caenorhabditis elegans 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48713/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48713/ E-GEOD-48712 Identification of Transcription Factor MAB-5::GFP Binding Regions in Embryo ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48712/E-GEOD-48712.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48712/ E-GEOD-48711 Identification of Transcription Factor F23F12.9::GFP Binding Regions in Embryos ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48711/E-GEOD-48711.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48711/ E-GEOD-48710 Identification of Transcription Factor SKN-1::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48710/E-GEOD-48710.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48710/ E-GEOD-48709 Identification of Transcription Factor NHR-23::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48709/E-GEOD-48709.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48709/ E-GEOD-48707 Identification of Transcription Factor NHR-25::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48707/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48707/ E-GEOD-48706 Identification of Transcription Factor HPL-2::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48706/E-GEOD-48706.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48706/ E-GEOD-48705 Identification of Transcription Factor LIN-35::GFP Binding Regions in young adults ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48705/E-GEOD-48705.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48705/ E-GEOD-48704 Identification of Transcription Factor SEM-4::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48704/E-GEOD-48704.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48704/ E-GEOD-48703 Identification of Transcription Factor EFL-1::GFP Binding Regions in Ab ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48703/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48703/ E-GEOD-48702 Identification of Transcription Factor GEI-11::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48702/E-GEOD-48702.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48702/ E-GEOD-48701 Identification of Transcription Factor NHR-129::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48701/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48701/ E-GEOD-48700 Identification of Transcription Factor SMA-9::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48700/E-GEOD-48700.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48700/ E-GEOD-48699 Identification of Transcription Factor PEB-1::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48699/E-GEOD-48699.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48699/ E-GEOD-48698 Identification of Transcription Factor NHR-12::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48698/E-GEOD-48698.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48698/ E-GEOD-48697 Identification of Transcription Factor LIN-35::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48697/E-GEOD-48697.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48697/ E-GEOD-48696 Identification of Transcription Factor DPL-1::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48696/E-GEOD-48696.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48696/ E-GEOD-48695 Identification of Transcription Factor CEH-16::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48695/E-GEOD-48695.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48695/ E-GEOD-48694 Identification of Transcription Factor C34F6.9::GFP Binding Regions in L2 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48694/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48694/ E-GEOD-48693 Identification of Transcription Factor HAM-1::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48693/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48693/ E-GEOD-48692 Identification of Transcription Factor R02D3.7::GFP Binding Regions in L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48692/E-GEOD-48692.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48692/ E-GEOD-48691 Identification of Transcription Factor GEI-11::GFP Binding Regions in YA ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48691/E-GEOD-48691.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48691/ E-GEOD-48690 Identification of Transcription Factor PHA-4::GFP Binding Regions in L4 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48690/E-GEOD-48690.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48690/ E-GEOD-48689 Identification of Transcription Factor NHR-76::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48689/E-GEOD-48689.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48689/ E-GEOD-48688 Identification of Transcription Factor MML-1::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48688/E-GEOD-48688.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48688/ E-GEOD-48687 Identification of Transcription Factor FKH-2::GFP Binding Regions in L3 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48687/E-GEOD-48687.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48687/ E-GEOD-48686 Identification of Transcription Factor AHA-1::GFP Binding Regions in L1 ChIP-seq Caenorhabditis elegans 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48686/E-GEOD-48686.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48686/ E-GEOD-48685 Mammary-specific gene activation is defined by progressive recruitment of STAT5 followed by the establishment of H3K4me3 marks ChIP-seq Mus musculus 3 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48685/E-GEOD-48685.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48685/ E-GEOD-48676 Expression data from Arabidopsis leavs 10 min after wounding. transcription profiling by array Arabidopsis thaliana 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48676/E-GEOD-48676.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48676/E-GEOD-48676.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48676/ E-GEOD-48674 The use of Microarray Technology to screen for tumor related genes regulated in myeloid leukosis of chicken, during infection with avian leucosis virus subgroup J. transcription profiling by array Gallus gallus 7 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48674/E-GEOD-48674.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48674/E-GEOD-48674.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48674/ E-GEOD-48658 Melita plumulosa toxicant response: What is contaminant mode of action? transcription profiling by array Melita plumulosa 40 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48658/E-GEOD-48658.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48658/E-GEOD-48658.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48658/ E-GEOD-48438 Expression data from osteoblastic lineage cells isolated from normal and leukemic mice transcription profiling by array Mus musculus 10 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48438/E-GEOD-48438.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48438/E-GEOD-48438.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48438/ E-GEOD-47073 PING 2.0: An R/Bioconductor package for nucleosome positioning using next-generation sequencing data ChIP-seq Saccharomyces cerevisiae 2 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47073/E-GEOD-47073.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47073/ E-GEOD-46900 Cyclodextrin protects podocytes in diabetic kidney disease. transcription profiling by array Homo sapiens 12 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46900/E-GEOD-46900.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46900/ E-GEOD-46897 Cyclodextrin protects podocytes in diabetic kidney disease [HumanWG-6 v3.0 array] transcription profiling by array Homo sapiens 12 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46897/E-GEOD-46897.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46897/ E-GEOD-44308 Sox11 loss-of-function mutant cortex at E17.5 transcription profiling by array Mus musculus 2 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44308/E-GEOD-44308.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44308/E-GEOD-44308.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44308/ E-GEOD-44225 Gene expression in human fungal pathogen Coccidioides immitis changes as mycelia differentiate into spherules and mature transcription profiling by array Coccidioides immitis RS 12 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44225/E-GEOD-44225.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44225/E-GEOD-44225.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44225/ E-GEOD-43808 Transcriptome signature of mouse embryonic stem cell-derived microglia is closely related to primary cultured microglia transcription profiling by array Mus musculus 27 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43808/E-GEOD-43808.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43808/ E-GEOD-41042 Effect of Bach2 overexpression in BCL6+/+ and -/- BCR-ABL1 transformed pre-B cells transcription profiling by array Mus musculus 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41042/E-GEOD-41042.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41042/E-GEOD-41042.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41042/ E-GEOD-36468 Reprogramming of two somatic nuclei in the same ooplasm leads to pluripotent embryonic stem cells transcription profiling by array Mus musculus 8 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36468/E-GEOD-36468.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36468/ E-GEOD-31540 Gene expression profiles for onset and progression of Cyclosporin A-induced cholestasis in C57BL/6 mice transcription profiling by array Mus musculus 58 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31540/E-GEOD-31540.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31540/E-GEOD-31540.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31540/ E-GEOD-31027 Effects of pre-B Cell Receptor in BCR-ABL1 driven pre-B cells transcription profiling by array Mus musculus 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31027/E-GEOD-31027.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31027/E-GEOD-31027.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31027/ E-GEOD-30928 Role and function of MYC in BCR-ABL1 driven pre-B cells transcription profiling by array Mus musculus 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30928/E-GEOD-30928.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30928/E-GEOD-30928.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30928/ E-GEOD-30889 Role and function of PAX5 in BCR-ABL1 driven pre-B cells transcription profiling by array Mus musculus 6 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30889/E-GEOD-30889.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30889/E-GEOD-30889.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30889/ E-GEOD-30883 Role and function of Bach2 in BCR-ABL1 driven pre-B ALL transcription profiling by array Mus musculus 12 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30883/E-GEOD-30883.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30883/E-GEOD-30883.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30883/ E-GEOD-30677 Lamin A/C is required for SHSY5Y neuroblastoma cell differentiation and its expression is linked to a less malignant phenotype. transcription profiling by array Homo sapiens 4 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30677/E-GEOD-30677.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30677/E-GEOD-30677.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30677/ E-GEOD-23924 cGvHD vs. non-cGvHD gene expression profiling in peripheral blood transcription profiling by array Homo sapiens 70 2013-07-11 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23924/E-GEOD-23924.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23924/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23924/ E-ERAD-157 RNA-seq of human cancer cell lines (Matched Pair Cell Line Tumour). EGA study. RNA-seq of coding RNA Homo sapiens 7 2013-07-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-157/ E-ERAD-107 RNA-seq of human IPS cells to investigate genetic and epigenetic variation. EGA study. RNA-seq of coding RNA Homo sapiens 215 2013-07-11 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-107/ E-MTAB-1771 Transcription profiling by array of naive human B cells to interrogate whole genome transcriptome changes in the process of plasma cell generation transcription profiling by array Homo sapiens 5 2013-07-10 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1771/E-MTAB-1771.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1771/ E-MTAB-1366 RNA-seq of coding RNA of total RNA and polysomal RNA from undifferentiated human mesencyymal stem cells (MSCs) and MSCs induced to differentiate into adipocytes for 72 hours RNA-seq of coding RNA Homo sapiens 12 2013-07-10 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1366/ E-GEOD-48762 Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II transcription profiling by array Homo sapiens 621 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48762/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48762/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48762/ E-GEOD-48760 Transcriptomes of the hybrid mouse diversity panel subjected to Isoproterenol challenge transcription profiling by array Mus musculus 208 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48760/E-GEOD-48760.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48760/ E-GEOD-48655 Expression data from growth restricted fetal rat pancreatic islets transcription profiling by array Rattus norvegicus 8 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48655/E-GEOD-48655.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48655/E-GEOD-48655.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48655/ E-GEOD-48652 Capturing drug responses by quantitative promoter activity profiling transcription profiling by array Homo sapiens 21 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48652/E-GEOD-48652.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48652/ E-GEOD-48648 Extrauterine growth restriction on pulmonary vascular endothelial dysfunction in adult male rats: the role of epigenetic mechanisms methylation profiling by array Rattus norvegicus 6 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48648/E-GEOD-48648.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48648/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48648/ E-GEOD-48629 Murine Bone Marrow Macrophages: Control vs. RANKL Stimulated transcription profiling by array Mus musculus 1 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48629/E-GEOD-48629.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48629/E-GEOD-48629.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48629/ E-GEOD-48622 Transcriptional Profiling of Neuronal APP/APLP2 Double-Conditional Knockout Mice. transcription profiling by array Mus musculus 16 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48622/E-GEOD-48622.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48622/E-GEOD-48622.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48622/ E-GEOD-48397 Expression data from (mouse) normal lung fibroblasts and carcinoma-associated fibroblasts transcription profiling by array Mus musculus 10 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48397/E-GEOD-48397.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48397/E-GEOD-48397.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48397/ E-GEOD-43746 Dysregulation of the colonic mucosally-adherent microbiota associates with HIV disease progression. transcription profiling by array Homo sapiens 34 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43746/E-GEOD-43746.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43746/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43746/ E-GEOD-43133 CD47 Inhibits Self-renewal and Reprogramming by Regulating c-Myc and Other Stem Cell Transcription Factors transcription profiling by array Mus musculus 12 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43133/E-GEOD-43133.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43133/E-GEOD-43133.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43133/ E-GEOD-39351 Expression data from murine intestinal tissue upon depletion of regulatory T cells transcription profiling by array Mus musculus 10 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39351/E-GEOD-39351.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39351/E-GEOD-39351.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39351/ E-GEOD-36904 ATF3 links host adaptive-response to breast cancer metastasis transcription profiling by array Mus musculus 8 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36904/E-GEOD-36904.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36904/E-GEOD-36904.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36904/ E-GEOD-34378 Aging Experiment transcription profiling by array Mus musculus 90 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34378/E-GEOD-34378.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34378/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34378/ E-GEOD-30059 Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections I transcription profiling by array Homo sapiens 72 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30059/E-GEOD-30059.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30059/ E-GEOD-23368 Identification of C/EBP? Target Genes in ALK+ Anaplastic Large Cell Lymphoma (ALCL) by Gene Expression Profiling and Chromatin Immunoprecipitation transcription profiling by array Homo sapiens 14 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23368/E-GEOD-23368.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23368/E-GEOD-23368.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23368/ E-GEOD-23207 Transcriptome analysis of MENX?associated rat pituitary adenomas identifies novel molecular mechanisms involved in the pathogenesis of human pituitary gonadotroph adenomas transcription profiling by array Rattus norvegicus 21 2013-07-10 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23207/E-GEOD-23207.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23207/E-GEOD-23207.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23207/ E-GEOD-48642 Genome-wide DNA methylation in murine ascitic leukemia cells (P388) methylation profiling by high throughput sequencing Mus musculus 9 2013-07-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48642/ E-GEOD-48611 Gene expression of human isogenic trisomy 21 induced pluripotent stem cells and derived neurons transcription profiling by array Homo sapiens 18 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48611/E-GEOD-48611.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48611/E-GEOD-48611.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48611/ E-GEOD-48604 Differential gene expression between Salmonella Typhimurium biofilms on glass vs cholesterol surfaces transcription profiling by array Salmonella enterica subsp. enterica serovar Typhimurium 8 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48604/E-GEOD-48604.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48604/E-GEOD-48604.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48604/ E-GEOD-48594 Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans RNA-seq of coding RNA Schizosaccharomyces pombe 2 2013-07-09 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48594/ E-GEOD-48593 Expression data from Oryza sativa 3037 (wild-type) and sd37 (mutant) seedlings transcription profiling by array Oryza sativa Indica Group 6 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48593/E-GEOD-48593.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48593/E-GEOD-48593.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48593/ E-GEOD-48586 Intense THz pulses down-regulate genes associated with skin cancer and psoriasis: a new therapeutic avenue? transcription profiling by array Homo sapiens 12 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48586/E-GEOD-48586.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48586/ E-GEOD-48583 The Pitx2:miR-200c/141:noggin pathway regulates BMP signaling and ameloblast differentiation transcription profiling by array Mus musculus 6 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48583/E-GEOD-48583.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48583/E-GEOD-48583.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48583/ E-GEOD-48578 Alteration of gene expression in human T cells treated with JPH203 transcription profiling by array Homo sapiens 2 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48578/E-GEOD-48578.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48578/E-GEOD-48578.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48578/ E-GEOD-48450 Dendritic cell subtypes from lymph nodes and blood show contrasted gene expression programs upon Bluetongue Virus infection transcription profiling by array Ovis aries 21 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48450/E-GEOD-48450.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48450/E-GEOD-48450.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48450/ E-GEOD-45530 DNA-RNA Immunoprecipitation sequencing (DRIP-seq) of human NT2 cells other Homo sapiens 5 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45530/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45530/ E-GEOD-45495 PTEN loss de?nes a PI3K/AKT pathway-dependent germinal center subtype of diffuse large B-cell lymphoma transcription profiling by array, comparative genomic hybridization by array Homo sapiens 55 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45495/E-GEOD-45495.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45495/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45495/ E-GEOD-44868 Genomic targets, and histone acetylation and gene expression profiling of neural HDAC inhibition ChIP-seq, transcription profiling by array Mus musculus 43 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44868/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44868/E-GEOD-44868.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44868/ E-GEOD-43994 Identification of genes involved in SHH subgroup medulloblastoma using murine whole-body Sleeping Beauty insertional mutagenesis transcription profiling by array Mus musculus 48 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43994/E-GEOD-43994.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43994/ E-GEOD-43841 Gene expression analysis of microvesicular hyperplastic polyps and sessile serrated polyps/adenomas transcription profiling by array Homo sapiens 18 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43841/E-GEOD-43841.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43841/ E-GEOD-43439 Genomic topography of HDACi-induced hyperacetylation of hippocampal chromatin [ChIP-Seq] ChIP-seq Mus musculus 15 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43439/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43439/ E-GEOD-43051 Gene expression profiling of neural HDAC inhibition transcription profiling by array Mus musculus 28 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43051/E-GEOD-43051.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43051/E-GEOD-43051.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43051/ E-GEOD-39186 Effect of TET1 and TET3 overexpression on the transcriptome of HEK293 cells transcription profiling by array Homo sapiens 12 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39186/E-GEOD-39186.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39186/E-GEOD-39186.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39186/ E-GEOD-38809 Bubble-seq Analysis of the Human Genome Reveals Distinct Chromatin-Mediated Mechanisms for Regulating Early- and Late-Firing Origins other, RNA-seq of coding RNA Homo sapiens 5 2013-07-09 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38809/E-GEOD-38809.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38809/ E-MEXP-3726 Transcription profiling by array of Arabidopsis with or without dexamethasone (DEX)-inducible expression of developmental regulator FIL to identify FIL-response genes transcription profiling by array Arabidopsis thaliana 16 2013-07-08 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3726/E-MEXP-3726.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3726/ E-MEXP-3591 Transcriptional profiling by array of human monocytes to study their involement in HIV-Tuberculosis associated Immune Reconstitution Inflammatory Syndrome at week 2 of combined antiretroviral threapy transcription profiling by array Homo sapiens 18 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3591/E-MEXP-3591.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3591/E-MEXP-3591.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3591/ E-GEOD-48595 Expression data analysis of murine pulmonary cryptococcosis induced by C. gattii transcription profiling by array Mus musculus 3 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48595/E-GEOD-48595.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48595/E-GEOD-48595.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48595/ E-GEOD-48579 AffyExon1 genearray expression profile of adult mouse microglia and splenic Ly6C monocytes transcription profiling by array Mus musculus 6 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48579/E-GEOD-48579.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48579/E-GEOD-48579.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48579/ E-GEOD-48572 Genome-wide mRNA expression analysis of primary cultured mouse brain microvascular endothelial cells after inhibition of PKC-beta transcription profiling by array Mus musculus 12 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48572/E-GEOD-48572.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48572/ E-GEOD-48571 The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter proximal nucleosomes ChIP-seq, transcription profiling by array Saccharomyces cerevisiae 5 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48571/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48571/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48571/ E-GEOD-48570 The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter proximal nucleosomes [array] transcription profiling by array Saccharomyces cerevisiae 3 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48570/E-GEOD-48570.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48570/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48570/ E-GEOD-48567 Expression data of A224 cell with ectopic overexpression of FGF18 and RFP transcription profiling by array Homo sapiens 6 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48567/E-GEOD-48567.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48567/E-GEOD-48567.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48567/ E-GEOD-48562 The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter proximal nucleosomes [seq] ChIP-seq Saccharomyces cerevisiae 2 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48562/E-GEOD-48562.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48562/ E-GEOD-47813 Pre-leukemic Cebpa mutant myeloid progenitors transcription profiling by array Mus musculus 15 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47813/E-GEOD-47813.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47813/E-GEOD-47813.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47813/ E-GEOD-46632 Identification of genes modulated by JIB-04 in lung cancer cells transcription profiling by array Homo sapiens 18 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46632/E-GEOD-46632.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46632/ E-GEOD-46439 Expression profiling of lung adenocarcinoma TPC tumor cells in Kras-driven NSCLC mouse model transcription profiling by array Mus musculus 11 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46439/E-GEOD-46439.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46439/E-GEOD-46439.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46439/ E-GEOD-46438 Expression profiling of CD24+ and CD24- tumor cells in Kras-driven NSCLC mouse model transcription profiling by array Mus musculus 12 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46438/E-GEOD-46438.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46438/E-GEOD-46438.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46438/ E-GEOD-44688 Global Rsh-dependent transcription profile of Brucella suis during stringent response unravels adaptation to nutrient starvation and cross-talk with other stress responses. transcription profiling by array Brucella suis 1330 4 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44688/E-GEOD-44688.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44688/E-GEOD-44688.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44688/ E-GEOD-44138 Cold-induced changes in gene expression in brown adipose tissue, white adipose tissue and liver transcription profiling by array Mus musculus 16 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44138/E-GEOD-44138.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44138/ E-GEOD-44125 Expression analysis of sporulating Bacillus subtilis strain 168 deleted for prpE gene transcription profiling by array Bacillus subtilis subsp. subtilis str. 168 36 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44125/E-GEOD-44125.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44125/E-GEOD-44125.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44125/ E-GEOD-43880 CD8 T cells induce perforin-dependent pathology in Leishmania braziliensis infection transcription profiling by array Homo sapiens 12 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43880/E-GEOD-43880.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43880/ E-GEOD-35609 Analysis of temporal gene expression responses during TNBS-induced colitis development transcription profiling by array Mus musculus 34 2013-07-08 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35609/E-GEOD-35609.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35609/ E-MTAB-1485 Transcription profiling by array of maize susceptible and resistant to maize dwarf mosaic virus (MDMV) infection transcription profiling by array Zea Mays 44 2013-07-07 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1485/E-MTAB-1485.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1485/ E-GEOD-48055 High-throughput sequencing and degradome analysis identify miRNAs and their targets involved in fruit senescence of Fragaria ananassa RNA-seq of non coding RNA Fragaria x ananassa 3 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48055/E-GEOD-48055.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48055/ E-GEOD-43335 Small RNA-seq of undiseased human brain RNA-seq of non coding RNA Homo sapiens 4 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43335/E-GEOD-43335.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43335/ E-GEOD-40220 INTESTINAL FILTER FOR USE IN OESOPHAGEAL CANCER RESEARCH transcription profiling by array Homo sapiens 9 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40220/E-GEOD-40220.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40220/E-GEOD-40220.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40220/ E-GEOD-39282 DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer comparative genomic hybridization by array Homo sapiens 128 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39282/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39282/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39282/ E-GEOD-39281 DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer [Agilent] comparative genomic hybridization by array Homo sapiens 94 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39281/E-GEOD-39281.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39281/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39281/ E-GEOD-39280 DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer [Affymetrix] comparative genomic hybridization by array Homo sapiens 34 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39280/E-GEOD-39280.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39280/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39280/ E-GEOD-39236 The rsa1-1 mutation affects global gene expression in Arabidopsis thaliana with or without salt stress transcription profiling by array Arabidopsis thaliana 12 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39236/E-GEOD-39236.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39236/E-GEOD-39236.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39236/ E-GEOD-5481 BRAF siRNA NHGRI_Liang_BRAF transcription profiling by array Homo sapiens 21 2013-07-07 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-5481/E-GEOD-5481.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-5481/ E-GEOD-48566 Expression data from mammary tumors from MOLF/Ei x PyMT mouse crosses and Diversity Outcross x PyMT mouse crosses transcription profiling by array Mus musculus 267 2013-07-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48566/E-GEOD-48566.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48566/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48566/ E-GEOD-48565 Expression data from mammary tumors from a Diversity Outcross x PyMT mouse cross transcription profiling by array Mus musculus 133 2013-07-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48565/E-GEOD-48565.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48565/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48565/ E-GEOD-48564 Expression data from mammary tumors from a MOLF/Ei x PyMT mouse cross transcription profiling by array Mus musculus 134 2013-07-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48564/E-GEOD-48564.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48564/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48564/ E-GEOD-48558 Expression data from normal and Malignant hematopoietic cells transcription profiling by array Homo sapiens 170 2013-07-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48558/E-GEOD-48558.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48558/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48558/ E-GEOD-48557 SCL and c-Kit controlled gene expression in erythroid progenitor cell line transcription profiling by array Homo sapiens 5 2013-07-06 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48557/E-GEOD-48557.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48557/E-GEOD-48557.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48557/ E-MTAB-1649 microRNA profiling by high throughput sequencing of colorectal cancer tumors using massive parallel sequencing RNA-seq of non coding RNA Homo sapiens 88 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1649/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1649/ E-MEXP-3608 Transcription profiling by array of bees infected with Sindbis-eGFP virus plus virus specific dsRNA or non specific dsRNA transcription profiling by array Apis mellifera 25 2013-07-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3608/E-MEXP-3608.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3608/ E-GEOD-47132 ZFP-1(AF10)/DOT-1 Complex Opposes H2B Ubiquitination to Reduce Pol II Transcription other Caenorhabditis elegans 4 2013-07-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47132/ E-GEOD-45786 Cardiac transcriptome of Tcf21-depleted Xenopus embryos RNA-seq of coding RNA Xenopus laevis 2 2013-07-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45786/ E-GEOD-44302 Comparison of WAT EPCs vs WAT ASCs transcription profiling by array Homo sapiens 2 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44302/E-GEOD-44302.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44302/E-GEOD-44302.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44302/ E-GEOD-44109 Actinonin induced changes in gene expression profiles in MEFs transcription profiling by array Mus musculus 20 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44109/E-GEOD-44109.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44109/E-GEOD-44109.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44109/ E-GEOD-42349 Integrative genomics of gene regulation by estrogen receptors and and coregulators ChIP-seq, transcription profiling by array Homo sapiens 14 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42349/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42349/E-GEOD-42349.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42349/ E-GEOD-42348 Integrative genomics of gene regulation by estrogen receptors and and coregulators [ChIP-seq] ChIP-seq Homo sapiens 10 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42348/E-GEOD-42348.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42348/ E-GEOD-42347 Integrative genomics of gene and metabolic regulation by estrogen receptors ? and ? and coregulators [expression] transcription profiling by array Homo sapiens 4 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42347/E-GEOD-42347.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42347/E-GEOD-42347.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42347/ E-GEOD-39965 Distinct signal transduction pathways downstream of the (P)RR revealed by microarray and ChIP-chip analyses transcription profiling by array, ChIP-chip by tiling array Homo sapiens 30 2013-07-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39965/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39965/ E-GEOD-39962 Distinct signal transduction pathways downstream of the (P)RR revealed by microarray and ChIP-chip analyses [Expt: Geni_Bafi] transcription profiling by array Homo sapiens 8 2013-07-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39962/E-GEOD-39962.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39962/ E-GEOD-39961 Distinct signal transduction pathways downstream of the (P)RR revealed by microarray and ChIP-chip analyses [Expt: PLZF_HEK] transcription profiling by array Homo sapiens 6 2013-07-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39961/E-GEOD-39961.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39961/ E-GEOD-39960 Distinct signal transduction pathways downstream of the (P)RR revealed by microarray and ChIP-chip analyses [Expt: ChIP-chip] ChIP-chip by tiling array Homo sapiens 6 2013-07-05 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39960/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39960/ E-GEOD-39228 Interferon Regulatory Factor-8, an Integral Determinant of Myeloid-Derived Suppressor Cell Subset Development transcription profiling by array Mus musculus 6 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39228/E-GEOD-39228.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39228/ E-GEOD-39147 Genome-wide Ifh1p occupancy at the OX growth phase and RC quiescent phase of the yeast metabolic cycle ChIP-seq Saccharomyces cerevisiae 4 2013-07-05 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39147/E-GEOD-39147.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39147/ E-GEOD-39129 A TLR- and non-TLR-mediated innate response to lentiviruses restricts hepatocyte entry and can be ameliorated by pharmacological blockade RNA-seq of coding RNA Mus musculus 6 2013-07-05 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39129/ E-MEXP-3859 Transcription profiling by array of lesional and non-lesional bulge cells from Lichen planopilaris (LPP) patients transcription profiling by array Homo sapiens 16 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3859/E-MEXP-3859.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3859/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3859/ E-MEXP-670 Transcription profiling by array of Arabidopsis wild type and single, double and triple T-DNA insertion mutants of AHK2, AHK3 and AHK4 treated with 6-benzyladenine (CAGE) transcription profiling by array Arabidopsis thaliana 96 2013-07-04 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-670/E-MEXP-670.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-670/ E-GEOD-48540 CD146 expression in mesenchymal stem cells is associated with vascular smooth muscle commitment transcription profiling by array Homo sapiens 12 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48540/E-GEOD-48540.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48540/E-GEOD-48540.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48540/ E-GEOD-48535 Aspergillus nidulans : Control (Wt) vs. ?cnaA or alcApkcA?cnaA transcription profiling by array Emericella nidulans 12 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48535/E-GEOD-48535.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48535/E-GEOD-48535.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48535/ E-GEOD-48521 Maternal obesity affects fetal neurodevelopmental and metabolic gene expression transcription profiling by array Homo sapiens 16 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48521/E-GEOD-48521.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48521/E-GEOD-48521.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48521/ E-GEOD-48514 A mouse model of endemic Burkitt translocations reveals the long-range boundaries of Ig-mediated oncogene deregulation ChIP-seq, other, RNA-seq of coding RNA Mus musculus 34 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48514/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48514/ E-GEOD-48505 Molecular Insight into the Association between Cartilage Regeneration and Ear Wound Healing in Genetic Mouse Models: Targeting New Genes in Regeneration transcription profiling by RT-PCR Mus musculus 8 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48505/E-GEOD-48505.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48505/ E-GEOD-48497 Restoration of anterior regeneration in a planarian with limited regenerative ability RNA-seq of coding RNA Procotyla fluviatilis 12 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48497/E-GEOD-48497.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48497/ E-GEOD-48188 Mi2ß knockdown in ß-estradiol-treated (24 h) G1E-ER-GATA-1 cells transcription profiling by array Mus musculus 6 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48188/E-GEOD-48188.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48188/E-GEOD-48188.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48188/ E-GEOD-44414 A bovine lymphosarcoma cell line infected with Theileria annulata exhibits an irreversible reconfiguration of host cell gene expression transcription profiling by array Bos taurus 18 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44414/E-GEOD-44414.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44414/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44414/ E-GEOD-44355 Expression data from Adriamycin-treated Emu-myc; Suv39h1-/- B-cell lymphoma transcription profiling by array Mus musculus 10 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44355/E-GEOD-44355.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44355/E-GEOD-44355.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44355/ E-GEOD-41402 microRNAs in C. elegans, P. pacificus, and S. ratti: Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes RNA-seq of non coding RNA Caenorhabditis elegans, Pristionchus pacificus, Strongyloides ratti 10 2013-07-04 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41402/ E-GEOD-39453 Induced Cdx2 binding in progenitor motor neurons and its effect on H3K27me3 chromatin domains ChIP-seq, transcription profiling by array Mus musculus 14 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39453/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39453/E-GEOD-39453.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39453/ E-GEOD-39434 Chromatin landscape of progenitor motor neurons [ChIP-seq] ChIP-seq Mus musculus 5 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39434/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39434/ E-GEOD-39433 Induced Cdx2 binding in progenitor motor neurons and its effect on H3K27me3 chromatin domains [ChIP-Seq] ChIP-seq Mus musculus 6 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39433/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39433/ E-GEOD-39422 Induced Cdx2 binding in progenitor motor neurons and its effect on H3K27me3 chromatin domains [Affymetrix] transcription profiling by array Mus musculus 9 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39422/E-GEOD-39422.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39422/E-GEOD-39422.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39422/ E-GEOD-39157 Genome-wide analysis of mRNA expression alterations in human primary hepatocytes compared with cAMP treated and non-treated human embryonic stem cell (hESC) derived hepatic populations transcription profiling by array Homo sapiens 9 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39157/E-GEOD-39157.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39157/E-GEOD-39157.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39157/ E-GEOD-38332 Identification of Nrf2-regulated genes in A549 lung cancer cells by oligonucleotide microarray transcription profiling by array Homo sapiens 9 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38332/E-GEOD-38332.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38332/E-GEOD-38332.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38332/ E-GEOD-31456 Transcriptional mechanisms controlling direct motor neuron programming ChIP-seq, transcription profiling by array Mus musculus 26 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31456/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31456/E-GEOD-31456.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31456/ E-GEOD-30457 Dissecting primary (translation independent) from secondary (translation dependent) IFN-mediated differential gene expression transcription profiling by array Mus musculus 18 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30457/E-GEOD-30457.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30457/E-GEOD-30457.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30457/ E-GEOD-19447 Rapid clearance of PcG histone modifications from Hox genes anticipates motor neuron differentiation: ChIP-chip ChIP-chip by tiling array Mus musculus 27 2013-07-04 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19447/E-GEOD-19447.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-19447/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19447/ E-MTAB-1754 DNA Methylation Profiles Define Stem Cell Identity and Reveal a Tight Embryonic-Extraembryonic Lineage Boundary methylation profiling by high throughput sequencing Mus musculus 8 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1754/ E-MTAB-1557 RNA-seq of non coding RNA of mouse Mili_Ctl and Mili_C-DAH testes to investigate epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesis RNA-seq of non coding RNA Mus musculus 4 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1557/ E-MEXP-3202 Cited-1 deficiency suppresses intestinal tumorigenesis through the repression of the Wnt pathway- evidence for the just right model of Wnt mediated tumorigenesis transcription profiling by array Mus musculus 12 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3202/E-MEXP-3202.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3202/E-MEXP-3202.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3202/ E-GEOD-48513 RLPII_phospho2_ab5095.Clone_8.Solexa ChIP-seq Drosophila melanogaster 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48513/E-GEOD-48513.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48513/ E-GEOD-48512 RPLII_ab5408.Kc.Solexa ChIP-seq Drosophila melanogaster 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48512/E-GEOD-48512.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48512/ E-GEOD-48511 HP1b (Henikoff).L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48511/E-GEOD-48511.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48511/ E-GEOD-48510 H3K9ac.L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48510/E-GEOD-48510.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48510/ E-GEOD-48509 H1.L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48509/E-GEOD-48509.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48509/ E-GEOD-48508 dSFMBT Q2642.L3.Solexa ChIP-seq Drosophila melanogaster 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48508/E-GEOD-48508.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48508/ E-GEOD-48504 Efficient immortalization of normal human mammary epithelial cells using two pathologically relevant agents does not require gross genomic alterations ChIP-chip by tiling array, methylation profiling by array Homo sapiens 47 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48504/E-GEOD-48504.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48504/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48504/ E-GEOD-48492 Effect of treatment for three months with chemical carcinogen and non-carcinogens on liver miRNAome transcription profiling by array Rattus norvegicus 38 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48492/E-GEOD-48492.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48492/E-GEOD-48492.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48492/ E-GEOD-48489 Dose and temporal effects of Phenobarbital on the liver miRNAome of male Fischer rats transcription profiling by array Rattus norvegicus 48 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48489/E-GEOD-48489.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48489/E-GEOD-48489.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48489/ E-GEOD-48480 Oncogenic Hras-dependent epidermal growth is inhibited following RNAi-mediated depletion of Ctnnb1 and Mllt6 RNA-seq of coding RNA Mus musculus 8 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48480/E-GEOD-48480.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48480/ E-GEOD-48478 Growth phase dependent gene expression of Salmonella Typhimurium SL1344 parental strain and isogenic ?relA, ?spoT ppGpp null strain transcription profiling by array Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 24 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48478/E-GEOD-48478.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48478/E-GEOD-48478.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48478/ E-GEOD-48477 Microarray of wild type, Shp2 knock-out, Pten knock-out and double knock-out erythroblasts transcription profiling by array Mus musculus 8 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48477/E-GEOD-48477.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48477/ E-GEOD-48471 Gene expression comparison of P. atrosepticum and it's derivative vasH mutant transcription profiling by array Pectobacterium atrosepticum SCRI1043 3 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48471/E-GEOD-48471.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48471/E-GEOD-48471.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48471/ E-GEOD-48466 Expression data from well-differentiated human bronchial epithelial cells infected with H1N1 Influenza isolates transcription profiling by array Homo sapiens 12 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48466/E-GEOD-48466.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48466/E-GEOD-48466.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48466/ E-GEOD-48459 Sarcoptes scabiei Mites Modulate Gene Expression In Human Skin Equivalents transcription profiling by array Homo sapiens 14 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48459/E-GEOD-48459.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48459/E-GEOD-48459.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48459/ E-GEOD-48457 H3K4me3 in mortal and immortal breast cells ChIP-chip by tiling array Homo sapiens 14 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48457/E-GEOD-48457.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48457/E-GEOD-48457.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48457/ E-GEOD-48456 H3K27me3 in mortal and immortal breast cells ChIP-chip by tiling array Homo sapiens 14 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48456/E-GEOD-48456.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48456/E-GEOD-48456.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48456/ E-GEOD-48447 DNA methylation of mortal and immortal breast cells methylation profiling by array Homo sapiens 19 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48447/E-GEOD-48447.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48447/E-GEOD-48447.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48447/ E-GEOD-48286 High-throughput sequencing of PROMPT-enriched samples. RNA-seq of coding RNA Homo sapiens 6 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48286/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48286/ E-GEOD-48148 Allele-specific chromosome conformations induced by a transgene- and locus-dependent imprinting ChIP-chip by tiling array Mus musculus 5 2013-07-03 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48148/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48148/ E-GEOD-48109 RNA-seq analysis of gene expression in male and female mouse liver RNA-seq of coding RNA Mus musculus 4 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48109/ E-GEOD-47661 Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts RNA-seq of coding RNA Debaryomyces hansenii, Kluyveromyces lactis, Saccharomyces cerevisiae 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47661/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47661/ E-GEOD-45431 Transcriptome Sequencing and De Novo Analysis of a Cytoplasmic Male Sterile Line and Its Near-Isogenic Restorer Line in Chili Pepper (Capsicum annuum L.) RNA-seq of coding RNA Capsicum annuum 2 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45431/ E-GEOD-44958 Smchd1 regulates autosomal genes subject to monoallelic expression transcription profiling by array Mus musculus 16 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44958/E-GEOD-44958.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44958/ E-GEOD-44669 Genome wide RNA-seq analysis of Smchd1 wild type and mutant RNA-seq of coding RNA Mus musculus 16 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44669/ E-GEOD-44668 Genome wide RNA-seq analysis of E14.5 Smchd1 wild type and mutant placenta RNA-seq of coding RNA Mus musculus 10 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44668/ E-GEOD-44665 Genome wide RNA-seq analysis of E9.5 Smchd1 wild type and mutant embryos RNA-seq of coding RNA Mus musculus 6 2013-07-03 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44665/ E-GEOD-44651 Laser Capture Microdissection isolation of preovulatory granulosa cells from WT and bERKO ovaries transcription profiling by array Mus musculus 12 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44651/E-GEOD-44651.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44651/E-GEOD-44651.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44651/ E-GEOD-44571 Genome-wide maps of histone modifications in male and female mouse liver ChIP-seq Mus musculus 38 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44571/E-GEOD-44571.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44571/ E-GEOD-43792 Campylobacter jejuni Cj1000 regulon transcription profiling by array Campylobacter jejuni 21 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43792/E-GEOD-43792.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43792/E-GEOD-43792.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43792/ E-GEOD-43659 Enterohemorrhagic Escherichia coli (EHEC) 8624 double deletions of kdpe and cra grown in DMEM transcription profiling by array Escherichia coli 8624 3 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43659/E-GEOD-43659.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43659/E-GEOD-43659.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43659/ E-GEOD-42765 MLLT10 gene recombinations in pediatric T-Acute Lymphoblastic Leukemia transcription profiling by array Homo sapiens 11 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42765/E-GEOD-42765.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42765/E-GEOD-42765.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42765/ E-GEOD-42641 A Top-down Systems Analysis Identifies an Innate Feed-forward Inflammatory Circuit Leading to Lethal Influenza Infection transcription profiling by array Mus musculus 255 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42641/E-GEOD-42641.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42641/ E-GEOD-42639 Transcriptomic comparison of 5 cell types during lethal and non-lethal influenza infection transcription profiling by array Mus musculus 75 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42639/E-GEOD-42639.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42639/ E-GEOD-42638 Identification of biological processes that distinguish lethal from non-lethal influenza infection transcription profiling by array Mus musculus 138 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42638/E-GEOD-42638.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42638/ E-GEOD-42552 JA-INDUCIBLE MYC2-LIKE1 acts as a repressor and negatively regulates jasmonate signaling in Arabidopsis transcription profiling by array Arabidopsis thaliana 24 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42552/E-GEOD-42552.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42552/E-GEOD-42552.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42552/ E-GEOD-42521 Pilot study to identify technical variation in microarray data of mouse lungs in the context of inter-animal variation transcription profiling by array Mus musculus 42 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42521/E-GEOD-42521.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42521/ E-GEOD-41701 Epigenomic alterations in localized and advanced prostate cancer methylation profiling by high throughput sequencing Homo sapiens 20 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41701/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41701/ E-GEOD-40982 Gene expression in mouse retinas with cone cyclic nucleotide gated channel deficiencies transcription profiling by array Mus musculus 15 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40982/E-GEOD-40982.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40982/ E-GEOD-40140 Identification of WRKY22 targets under submergence in Arabidopsis transcription profiling by array, ChIP-chip by tiling array Arabidopsis thaliana 30 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40140/E-GEOD-40140.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40140/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40140/ E-GEOD-40139 Identification of WRKY22 targets under submergence in Arabidopsis (mRNA) transcription profiling by array Arabidopsis thaliana 24 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40139/E-GEOD-40139.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40139/E-GEOD-40139.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40139/ E-GEOD-40138 Identification of WRKY22 direct targets under submergence in Arabidopsis with ChIP ChIP-chip by tiling array Arabidopsis thaliana 6 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40138/E-GEOD-40138.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40138/E-GEOD-40138.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40138/ E-GEOD-39743 Stump project-- mRNA dermis; Volar versus non-volar acral skin gene expression transcription profiling by array Homo sapiens 12 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39743/E-GEOD-39743.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39743/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39743/ E-GEOD-39724 Gene expression analysis of iTregs and nTregs transcription profiling by array Mus musculus 42 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39724/E-GEOD-39724.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39724/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39724/ E-GEOD-39596 Naive CD4+ T cell activation transcriptome transcription profiling by array Homo sapiens, Mus musculus 37 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39596/E-GEOD-39596.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39596/E-GEOD-39596.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39596/ E-GEOD-39595 Role of Dec1 transcription factor in naive CD4+ T cell activation transcriptome transcription profiling by array Mus musculus 16 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39595/E-GEOD-39595.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39595/E-GEOD-39595.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39595/ E-GEOD-39594 Human naive CD4+ T cell activation transcriptome transcription profiling by array Homo sapiens 21 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39594/E-GEOD-39594.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39594/E-GEOD-39594.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39594/ E-GEOD-39500 Stump project-- mRNA basal layer keratinocytes; Volar versus non-volar acral skin gene expression transcription profiling by array Homo sapiens 4 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39500/E-GEOD-39500.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39500/E-GEOD-39500.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39500/ E-GEOD-39293 Gene expression profiling of cidofovir treatment and resistance inHeLa, HaCaT, and PHK cells transcription profiling by array Homo sapiens 24 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39293/E-GEOD-39293.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39293/E-GEOD-39293.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39293/ E-GEOD-39267 Stump project -- mRNA epidermis; Volar versus non-volar acral skin gene expression transcription profiling by array Homo sapiens 12 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39267/E-GEOD-39267.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39267/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39267/ E-GEOD-39266 Stump project -- mRNA fibroblasts; Volar versus non-volar acral skin gene expression transcription profiling by array Homo sapiens 11 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39266/E-GEOD-39266.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39266/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39266/ E-GEOD-39131 Stump project -- methylation whole tissue; volar versus non-volar acral skin gene expression methylation profiling by array Homo sapiens 12 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39131/E-GEOD-39131.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39131/ E-GEOD-39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model transcription profiling by array Mus musculus 94 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39062/E-GEOD-39062.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39062/ E-GEOD-38732 Stump project-- miRNA whole tissue; Volar versus non-volar acral skin gene expression transcription profiling by array Homo sapiens 16 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38732/E-GEOD-38732.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38732/E-GEOD-38732.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38732/ E-GEOD-31962 HCV Replication: permissive and non-permissive cells transcription profiling by array, methylation profiling by array Homo sapiens 8 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31962/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31962/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31962/ E-GEOD-31960 Huh7 cells exist as a mixed population of cells with distinct patterns of gene methylation methylation profiling by array Homo sapiens 6 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31960/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31960/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31960/ E-GEOD-31903 MX1 is Silenced in Permissive HRP4 Cells Supporting HCV Replication transcription profiling by array Homo sapiens 2 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31903/E-GEOD-31903.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31903/E-GEOD-31903.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31903/ E-GEOD-30658 Gene expression profile in the diaphragm following contractile inactivity during thoracic surgery transcription profiling by array Homo sapiens 9 2013-07-03 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30658/E-GEOD-30658.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30658/E-GEOD-30658.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30658/ E-MEXP-3866 Transcription profiling by array of Danio rerio samples originating from livers of male fish exposed to 17-beta estradiol transcription profiling by array Danio rerio 20 2013-07-02 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3866/E-MEXP-3866.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3866/ E-GEOD-48487 Characterization and Comparison of the Leukocyte Transcriptomes of Three Cattle Breeds RNA-seq of coding RNA Bos indicus, Bos taurus 3 2013-07-02 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48487/ E-GEOD-48444 Microarray-based gene expression data from BPLER tumor explants. transcription profiling by array Homo sapiens 6 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48444/E-GEOD-48444.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48444/E-GEOD-48444.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48444/ E-GEOD-48442 Plasma miRNA profiling of nasopahryngeal carcinoma patients transcription profiling by array Homo sapiens 30 2013-07-02 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48442/E-GEOD-48442.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48442/ E-GEOD-48441 DNA microarray analysis for HepG2 cells exposed to arsenic trioxide transcription profiling by array Homo sapiens 21 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48441/E-GEOD-48441.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48441/E-GEOD-48441.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48441/ E-GEOD-47958 Transcriptional effect of CRH on MCF7 estrogen receptor signalling transcription profiling by RT-PCR Homo sapiens 2 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47958/E-GEOD-47958.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47958/ E-GEOD-47212 Murine HCC development: comparison of wt, krt18+/- and krt18-/- liver tumors hybridized against non-affected wt liver tissue transcription profiling by array Mus musculus 36 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47212/E-GEOD-47212.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47212/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47212/ E-GEOD-46620 Permanganate ChIP-seq analysis of Pol II in nonheat shocked and heat shocked Drosophila S2R+ cells and nonheat shocked BG3 cells ChIP-seq Drosophila melanogaster 3 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46620/E-GEOD-46620.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46620/ E-GEOD-45438 Mitochondrial two-component signaling systems in Candida albicans transcription profiling by array Candida albicans 8 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45438/E-GEOD-45438.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45438/E-GEOD-45438.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45438/ E-GEOD-43664 Expression data from canine B-cell lymphomas transcription profiling by array Canis lupus familiaris 58 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43664/E-GEOD-43664.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43664/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43664/ E-GEOD-43412 Reconstructing de novo silencing of an active plant retrotransposon: dynamics, mechanisms, biological implications RNA-seq of non coding RNA Arabidopsis thaliana 4 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43412/E-GEOD-43412.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43412/ E-GEOD-43176 Wild-Type Nras Lacks Tumor Suppressor Activity and Nras Oncogene Dosage Strongly Modulates Hematopoietic Transformation transcription profiling by array Homo sapiens 108 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43176/E-GEOD-43176.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43176/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43176/ E-GEOD-42622 Lactobacillus acidophilus and Helicobacter pylori stimulation of bone marrow derived macrophage transcription profiling by array Mus musculus 12 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42622/E-GEOD-42622.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42622/E-GEOD-42622.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42622/ E-GEOD-42413 The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb ChIP-seq, RNA-seq of coding RNA Homo sapiens, Macaca mulatta, Mus musculus 56 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42413/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42413/ E-GEOD-41930 Genome-wide analysis of gene expression in response to bortezomib treatment transcription profiling by array Homo sapiens, Mus musculus 50 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41930/E-GEOD-41930.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41930/ E-GEOD-41929 Genome-wide analysis of gene expression in response to bortezomib treatment [human cell lines]. transcription profiling by array Homo sapiens 6 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41929/E-GEOD-41929.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41929/ E-GEOD-41928 Genome-wide analysis of gene expression in response to bortezomib treatment [mouse cell lines II] transcription profiling by array Mus musculus 20 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41928/E-GEOD-41928.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41928/ E-GEOD-41927 Genome-wide analysis of gene expression in response to bortezomib treatment [mouse cell lines I] transcription profiling by array Mus musculus 24 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41927/E-GEOD-41927.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41927/ E-GEOD-41053 A gene regulatory network involving the class II ERF transcriptional repressors in leaf senescence of Arabidopsis thaliana transcription profiling by array Arabidopsis thaliana 4 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41053/E-GEOD-41053.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41053/E-GEOD-41053.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41053/ E-GEOD-40806 Comparative analysis of transcriptional gene regulation indicates similar physiological response in mouse tissues at low absorbed doses from i.v. administered 211At transcription profiling by array Mus musculus 90 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40806/E-GEOD-40806.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40806/E-GEOD-40806.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40806/ E-GEOD-39557 Expression data from genetically engineered mouse models (GEMMs) transcription profiling by array Mus musculus 15 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39557/E-GEOD-39557.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39557/E-GEOD-39557.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39557/ E-GEOD-35509 Lack of hepatic response of microRNA in mice following DB[a,h]A exposure transcription profiling by array Mus musculus 38 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35509/E-GEOD-35509.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35509/E-GEOD-35509.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35509/ E-GEOD-35215 Lack of hepatic response of microRNA in mice following DB[a,h]A exposure (Agilent expression) transcription profiling by array Mus musculus 19 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35215/E-GEOD-35215.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35215/E-GEOD-35215.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35215/ E-GEOD-35195 Lack of hepatic response of microRNA in mice following DB[a,h]A exposure (Agilent miRNA) transcription profiling by array Mus musculus 19 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35195/E-GEOD-35195.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35195/E-GEOD-35195.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35195/ E-GEOD-29742 MIRnome Profiling of Hereditary Pheochromocytoma and Paraganglioma Reveals Specific Signatures According to Primary Mutation: Possible Implications in the Differentiation Status of Tumor Cells transcription profiling by array Homo sapiens 54 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29742/E-GEOD-29742.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29742/E-GEOD-29742.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29742/ E-GEOD-23729 The effect of aneuploidy on gene expression transcription profiling by array Mus musculus 12 2013-07-02 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23729/E-GEOD-23729.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23729/ E-MTAB-1700 RNA-seq of coding RNA from fungus Cryptococcus neoformans var grubii cultured in different media, temperature and cell density to express the largest number of genes and thus facilitate gene annotation RNA-seq of coding RNA Cryptococcus neoformans var. grubii H99 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1700/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1700/ E-MTAB-1575 Comparative genomic hybridization by array of follicular thyroid lesions comparative genomic hybridization by array Homo sapiens 66 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1575/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1575/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1575/ E-MTAB-1498 RNA-seq of coding RNA from four distinct human limbal compartments, including basal limbal crypts (BLCs), superficial limbal crypts (SLCs), cornea, and the supporting stroma, with the aid of laser capture microdissection and deep RNA sequencing RNA-seq of coding RNA Homo sapiens 4 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1498/ E-MTAB-1440 Transcription profiling by array of 20 gastric adenocarcinoma samples from a Norwegian selection compared to matched normal mucosa transcription profiling by array Homo sapiens 40 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1440/E-MTAB-1440.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1440/E-MTAB-1440.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1440/ E-MTAB-1422 Transcription profiling by array of human precusor B cell subsets from children and adults transcription profiling by array Homo sapiens 39 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1422/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1422/ E-MTAB-1395 microRNA profiling by array and transcription profiling by array of human carcinoma cell line E10 after transfection with miR-20b or miR-363-5p to investigate the anti-proliferative effects of members of the miR-106a-363 cluster transcription profiling by array, microRNA profiling by array Homo sapiens 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1395/E-MTAB-1395.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1395/E-MTAB-1395.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1395/ E-MTAB-1178 Transcription profiling by high throughput sequencing of primordial germ cells from e6.5, e7.5, e8.5 embryos and e7.5 somatic neighbours and Blimp1-KO mice RNA-seq of coding RNA Mus musculus 10 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1178/E-MTAB-1178.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1178/ E-MTAB-1118 Expression profiling of transgenic TH-MYCN mice with palpable tumors treated with MLN8054 or vehicle transcription profiling by array Mus musculus 24 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1118/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1118/ E-MTAB-504 Transcription profiling by array and ChIP of fission yeast to understand the contributions of transcription and mRNA turnover to gene expression dynamics in response to oxidative stress transcription profiling by array, ChIP-chip by array Schizosaccharomyces pombe 24 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-504/E-MTAB-504.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-504/ E-MEXP-3902 Transcription profiling by array of a peach (Prunus persica) population subjected to cold storage to investigate fruit cold response transcription profiling by array Prunus persica 30 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3902/E-MEXP-3902.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3902/E-MEXP-3902.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3902/ E-MEXP-3767 Transcription profiling by array of persistent polyclonal B cell lymphocytosis (PPBL) and control IgMpos B cell subsets transcription profiling by array Homo sapiens 19 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3767/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3767/E-MEXP-3767.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3767/ E-MEXP-3748 Transcription profiling by array of mouse embryonic stem cells to investigate the function of miR99a/let-7c miRNAs during cardiomyogenesis transcription profiling by array Mus musculus 18 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3748/E-MEXP-3748.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3748/E-MEXP-3748.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3748/ E-MEXP-3647 Transcription profiling by array of blood and bone marrow samples obtained from patients suffering from acute myeloid leukemia (AML, subtype M1 and M2) transcription profiling by array Homo sapiens 40 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3647/E-MEXP-3647.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3647/ E-GEOD-48435 The genetic landscape of mutations in Burkitt lymphoma transcription profiling by array Homo sapiens 21 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48435/E-GEOD-48435.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48435/E-GEOD-48435.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48435/ E-GEOD-48433 Microarray analysis of xenograft models in use at the Developmental Therapeutics Program of the National Cancer Institute (DTP-NCI) transcription profiling by array Homo sapiens 823 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48433/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48433/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48433/ E-GEOD-48431 Multiplexed Illumina sequencing libraries from picogram quantities of DNA ChIP-seq Drosophila melanogaster 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48431/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48431/ E-GEOD-48383 ChIp-Chip using RNAP II, CREB C/EBPb and cJun antibody in undifferentiated or differentiated keratinocytes transcription profiling by array, ChIP-chip by tiling array Mus musculus 26 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48383/E-GEOD-48383.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48383/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48383/ E-GEOD-48381 ChIp-Chip using RNAP II, CREB C/EBPb and cJun antibody in undifferentiated or differentiated keratinocytes (ChIP-Chip) ChIP-chip by tiling array Mus musculus 16 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48381/E-GEOD-48381.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48381/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48381/ E-GEOD-48210 Kinetic analysis of the response to anti-CD3 in conventional and regulatory CD4+ T cells, in mice and in vitro. transcription profiling by array Mus musculus 42 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48210/E-GEOD-48210.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48210/E-GEOD-48210.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48210/ E-GEOD-48207 Microarray analysis of elp2 and wild type (Col-0) infected with the necrotrophic fungal pathogen Botrytis cinerea transcription profiling by array Arabidopsis thaliana 40 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48207/E-GEOD-48207.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48207/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48207/ E-GEOD-48179 Benzene effects on leaves: Study of benzene metabolism in higher plants. transcription profiling by array Brassica oleracea 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48179/E-GEOD-48179.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48179/E-GEOD-48179.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48179/ E-GEOD-48163 HEK293T cells were transfected with the Rbp1-amr or slow (R729H-amr) ?-amanitin resistant subunit of RNA Pol II and selected with ?-amanitin 24 hours after transfection for additional 24 hours transcription profiling by array Homo sapiens 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48163/E-GEOD-48163.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48163/E-GEOD-48163.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48163/ E-GEOD-48146 Expression data from Ribonuclease Inhibitor (RI/Rnh1) deficient E9.5 yolksac transcription profiling by array Mus musculus 9 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48146/E-GEOD-48146.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48146/E-GEOD-48146.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48146/ E-GEOD-48128 Regulation of transcription by MLL2 complex and MLL complexes-associated protein AKAP95 transcription profiling by array Mus musculus 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48128/E-GEOD-48128.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48128/ E-GEOD-48043 Late life rapamycin treatment reverses age-related heart dysfunction RNA-seq of coding RNA Mus musculus 20 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48043/ E-GEOD-47980 Cisplatin treated melanoma and melanocyte cell lines transcription profiling by array Homo sapiens 36 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47980/E-GEOD-47980.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47980/ E-GEOD-47979 In vivo determination of candidate direct targets of the nonsense mediated decay pathway in intact Drosophila transcription profiling by array Drosophila melanogaster 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47979/E-GEOD-47979.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47979/E-GEOD-47979.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47979/ E-GEOD-47855 Gene expression analysis for CD56- T, NK, CD56+ T cells, and iNKT cells transcription profiling by array Homo sapiens 30 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47855/E-GEOD-47855.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47855/E-GEOD-47855.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47855/ E-GEOD-47694 Regulation of Mouse Lens Development and Gene Expression by Krüppel-Like Factor 4 transcription profiling by array Mus musculus 10 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47694/E-GEOD-47694.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47694/E-GEOD-47694.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47694/ E-GEOD-47589 Transcriptome analysis of Escherichia coli C strains (wt and PKH5000, a butanol-tolerant mutant) after 1-butanol treatment transcription profiling by array Escherichia coli 18 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47589/E-GEOD-47589.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47589/E-GEOD-47589.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47589/ E-GEOD-47509 High resolution view of bacteriophage lambda gene expression by ribosome profiling RNA-seq of coding RNA Escherichia coli str. K-12 substr. MG1655 20 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47509/E-GEOD-47509.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47509/ E-GEOD-47489 Maturation,not initiation, is major roadblock during reprogramming toward pluripotency from human fibrobalsts transcription profiling by array Homo sapiens 60 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47489/E-GEOD-47489.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47489/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47489/ E-GEOD-47443 Somatic copy number alterations associating with alcohol drinking and smoking in head and neck squamous cell carcinoma comparative genomic hybridization by array Homo sapiens 225 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47443/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47443/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47443/ E-GEOD-47391 Response to salt stress of Raptor mutants transcription profiling by array Arabidopsis thaliana 14 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47391/E-GEOD-47391.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47391/E-GEOD-47391.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47391/ E-GEOD-47100 Molecular basis for chromatin binding and regulation of MLL5 ChIP-chip by tiling array Mus musculus 1 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47100/E-GEOD-47100.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47100/ E-GEOD-46890 GENE EXPRESSION PROFILE REGULATED BY THE HPV16-E7 ONCOPROTEIN AND ESTRADIOL IN CERVICAL TISSUE transcription profiling by array Mus musculus 15 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46890/E-GEOD-46890.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46890/E-GEOD-46890.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46890/ E-GEOD-46867 Molecular interaction between PHO2 and GIGANTEA reveals a new crosstalk between flowering time and Pi homeostasis in rice transcription profiling by array Oryza sativa Japonica Group 18 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46867/E-GEOD-46867.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46867/E-GEOD-46867.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46867/ E-GEOD-46726 In Vivo Mapping of Notch Pathway Activity in Normal and Stress Hematopoiesis transcription profiling by array Mus musculus 22 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46726/E-GEOD-46726.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46726/E-GEOD-46726.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46726/ E-GEOD-46725 Expression data from E13.5 Fetal Liver LSK Hes1-GFP positive and E13.5 Fetal Liver LSK Hes1-GFP negative transcription profiling by array Mus musculus 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46725/E-GEOD-46725.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46725/E-GEOD-46725.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46725/ E-GEOD-46724 Expression data from adult Myeloerythroid Progenitors (MP) ICN2 positive and adult Myeloerythroid Progenitors (MP) ICN2 negative transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46724/E-GEOD-46724.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46724/E-GEOD-46724.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46724/ E-GEOD-46723 Expression data from adult Myeloerythroid Progenitors (MP) Hes1-GFP positive and adult Myeloerythroid Progenitors (MP) Hes1-GFP negative transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46723/E-GEOD-46723.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46723/E-GEOD-46723.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46723/ E-GEOD-46722 Expression data from adult LSK Hes1-GFP positive and adult LSK Hes1-GFP negative transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46722/E-GEOD-46722.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46722/E-GEOD-46722.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46722/ E-GEOD-46701 Expression data from Wild-type (WT) and Alb/AEG-1 mice which are transgenic mice with hepatocyte-specific overexpression of AEG-1 (Astrocyte elevated gene 1) transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46701/E-GEOD-46701.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46701/E-GEOD-46701.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46701/ E-GEOD-46691 Discovery and validation of a prostate cancer genomic classifier that predicts early metastasis following radical prostatectomy transcription profiling by array Homo sapiens 545 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46691/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46691/ E-GEOD-46642 Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells ChIP-seq, transcription profiling by array Homo sapiens 20 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46642/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46642/E-GEOD-46642.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46642/ E-GEOD-46631 Vascularised and functional human liver from an iPSC-derived organ bud transplant transcription profiling by array Homo sapiens, Mus musculus 13 2013-07-01 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46631/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46631/ E-GEOD-46523 Whole transcriptome RNA-seq of undiseased human prefrontal cortex RNA-seq of coding RNA, RNA-seq of non coding RNA Homo sapiens 5 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46523/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46523/ E-GEOD-46499 Unusual DNA packaging characteristics in endo-reduplicated C. elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity ChIP-seq Caenorhabditis elegans 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46499/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46499/ E-GEOD-46493 Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells (Affymetrix) transcription profiling by array Homo sapiens 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46493/E-GEOD-46493.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46493/E-GEOD-46493.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46493/ E-GEOD-46405 Olig1 is a Smad cofactor involved in cell motility induced by transforming growth factor-b transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46405/E-GEOD-46405.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46405/E-GEOD-46405.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46405/ E-GEOD-46383 Expression from Staphylococcus aureus strain USA300-lac during low and 2M NaCl exposure transcription profiling by array Staphylococcus aureus subsp. aureus USA300 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46383/E-GEOD-46383.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46383/E-GEOD-46383.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46383/ E-GEOD-46124 ER, GR, and E2 ChIP-seq, transcription profiling by array Mus musculus 51 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46124/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46124/E-GEOD-46124.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46124/ E-GEOD-46123 ER and GR crosstalk at the Genomic Level in mouse mammary cells ChIP-seq Mus musculus 39 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46123/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46123/ E-GEOD-46121 Changes in DNaseI hypersensitivity upon co-treatment of cells with Dex and E2 ChIP-seq Mus musculus 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46121/E-GEOD-46121.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46121/ E-GEOD-46116 Changes in gene expression upon co-treatment of cells with Dex and E2 transcription profiling by array Mus musculus 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46116/E-GEOD-46116.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46116/E-GEOD-46116.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46116/ E-GEOD-46028 EGFRvIII vs. Control - xenograft glioblastomas transcription profiling by array Homo sapiens 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46028/E-GEOD-46028.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46028/E-GEOD-46028.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46028/ E-GEOD-45958 Radiation-induced epigenetic DNA methylation modification of radiation-response pathways methylation profiling by array Homo sapiens 24 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45958/E-GEOD-45958.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45958/ E-GEOD-45939 Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS ChIP-seq, transcription profiling by array Arabidopsis thaliana 20 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45939/E-GEOD-45939.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45939/E-GEOD-45939.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45939/ E-GEOD-45938 Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS (ChIP) ChIP-seq Arabidopsis thaliana 4 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45938/ E-GEOD-45860 An Easy Operating Pathogen Microarray (EOPM) Platform for Rapid Screening of Vertebrate Pathogens transcription profiling by array Homo sapiens 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45860/E-GEOD-45860.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45860/E-GEOD-45860.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45860/ E-GEOD-45707 Epigenome analysis of U937, U937 treated with 5mM azacytidine for 24 and 72 hours and its azacytidine-resistant derivative methylation profiling by array Homo sapiens 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45707/E-GEOD-45707.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45707/ E-GEOD-45358 Gene expression analysis of murine peritoneal macrophages deficient for SAMHD1 and IFNAR RNA-seq of coding RNA Mus musculus 16 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45358/ E-GEOD-45354 Identification of novel copy number alterations by high-resolution aCGH from FFPE cutaneous melanoma samples comparative genomic hybridization by array Homo sapiens 34 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45354/E-GEOD-45354.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45354/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45354/ E-GEOD-45232 A Genetic-to-Epigenetic Crosstalk Plays a Pivotal Role in the Promotion of KrasG12D-Induced Senescence and PanIN formation transcription profiling by array Mus musculus 5 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45232/E-GEOD-45232.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45232/E-GEOD-45232.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45232/ E-GEOD-45161 Expression data from in vivo experiment comparing untreated controls with animals treated with bevacizumab (Avastin) transcription profiling by array Homo sapiens 10 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45161/E-GEOD-45161.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45161/E-GEOD-45161.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45161/ E-GEOD-44919 Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS (expression) transcription profiling by array Arabidopsis thaliana 16 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44919/E-GEOD-44919.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44919/E-GEOD-44919.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44919/ E-GEOD-44365 Epididymosomes convey different repertoires of miRNAs throughout the epididymis transcription profiling by array Bos taurus 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44365/E-GEOD-44365.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44365/E-GEOD-44365.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44365/ E-GEOD-44254 Chip-chip for H4K16ac in HEK293 cells ChIP-chip by tiling array Homo sapiens 10 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44254/E-GEOD-44254.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44254/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44254/ E-GEOD-44249 Visual automated fluorescence electrophoresis provides simultaneous quality, quantity, and molecular weight spectra for genomic DNA from archived neonatal blood spots comparative genomic hybridization by array Homo sapiens 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44249/E-GEOD-44249.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44249/E-GEOD-44249.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44249/ E-GEOD-44111 Transcriptome Profile of G?12-depleted OSCC cells transcription profiling by array Homo sapiens 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44111/E-GEOD-44111.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44111/E-GEOD-44111.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44111/ E-GEOD-44102 affy_med_2011_14-Transcriptomic analysis of roots of WT (A17) Medicago truncatula plants and of a hypermycorrhizal mutant (B9) grown on limiting (P/10) or non-limiting phosphate (P2). transcription profiling by array Medicago truncatula 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44102/E-GEOD-44102.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44102/E-GEOD-44102.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44102/ E-GEOD-44087 Gene expression profiling of mouse uterine epithelial cells isolated on morning of day 4 of pregnancy transcription profiling by array Mus musculus 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44087/E-GEOD-44087.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44087/E-GEOD-44087.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44087/ E-GEOD-44062 Analysis of the nitrate-responsive transcriptome of the Arabidopsis root RNA-seq of coding RNA, RNA-seq of non coding RNA Arabidopsis thaliana 8 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44062/ E-GEOD-43780 affy_compartimentation_rice_albumen_embryon-Transcriptomic study of the rice seed compartimentation during germination transcription profiling by array Oryza sativa 36 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43780/E-GEOD-43780.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43780/E-GEOD-43780.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43780/ E-GEOD-43745 Genome-wide analyses of Fusarium fujikuroi reveal complex regulation of secondary metabolism and new metabolites transcription profiling by array Fusarium fujikuroi 15 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43745/E-GEOD-43745.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43745/E-GEOD-43745.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43745/ E-GEOD-43533 poplar estradiol study-TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDING Species: Populus tremula x Populus aba transcription profiling by array Populus tremula x Populus alba 9 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43533/E-GEOD-43533.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43533/E-GEOD-43533.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43533/ E-GEOD-43528 affy_cotton_2011_12-Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization transcription profiling by array Gossypium barbadense, Gossypium hirsutum 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43528/E-GEOD-43528.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43528/E-GEOD-43528.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43528/ E-GEOD-43518 Identification of genes regulated by L-lactate and by DL-lactate in Lactobacillus plantarum transcription profiling by array Lactobacillus plantarum 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43518/E-GEOD-43518.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43518/E-GEOD-43518.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43518/ E-GEOD-43406 Evaluating the restoration of DNA derived from archival formalin-fixed paraffin embedded tissues for genomic profiling by SNP-CGH analysis genotyping by array, comparative genomic hybridization by array Homo sapiens 43 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43406/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43406/ E-GEOD-43161 An RNA-binding protein Spo5 promotes meiosis II through the regulation of cyclin Cdc13 transcription profiling by array Schizosaccharomyces pombe 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43161/E-GEOD-43161.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43161/E-GEOD-43161.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43161/ E-GEOD-43018 Identification of GATA1 transcriptional regulation in the megakaryoblastic cell line Meg01 ChIP-chip by tiling array Homo sapiens 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43018/E-GEOD-43018.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43018/E-GEOD-43018.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43018/ E-GEOD-42986 Transcriptome profiling in human primary mitochondrial respiratory chain disease transcription profiling by array Homo sapiens 53 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42986/E-GEOD-42986.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42986/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42986/ E-GEOD-42879 Overexpression of GATA1 confers resistance to chemotherapy in acute megakaryocytic leukemia transcription profiling by array Homo sapiens 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42879/E-GEOD-42879.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42879/E-GEOD-42879.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42879/ E-GEOD-42874 Integrative transcriptomic and proteomic analysis of osteocytic cells exposed to fluid flow reveals novel mechano-sensitive signaling pathways transcription profiling by array Mus musculus 24 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42874/E-GEOD-42874.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42874/E-GEOD-42874.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42874/ E-GEOD-42840 High-fat diet-mediated dysbiosis cooperates with oncogenic K-Ras activation to promote intestinal carcinogenesis independently of obesity. transcription profiling by array Mus musculus 13 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42840/E-GEOD-42840.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42840/E-GEOD-42840.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42840/ E-GEOD-42829 microRNA levels are altered in male and female mouse hearts: a role for miR-222 transcription profiling by array Mus musculus 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42829/E-GEOD-42829.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42829/E-GEOD-42829.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42829/ E-GEOD-42607 Gene-expression profiles of primary cultures of cortical neurons and astrocytes. transcription profiling by array Mus musculus 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42607/E-GEOD-42607.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42607/E-GEOD-42607.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42607/ E-GEOD-42591 Expression data from fresh and cultured islets at different glucose concentrations transcription profiling by array Mus musculus 26 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42591/E-GEOD-42591.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42591/E-GEOD-42591.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42591/ E-GEOD-42388 SNAI1-mediated epithelial-mesenchymal transition confers chemoresistance and cellular plasticity on MCF10A cells by regulating signaling pathways involved in apoptosis and stem cell maintenance transcription profiling by array Homo sapiens 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42388/E-GEOD-42388.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42388/E-GEOD-42388.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42388/ E-GEOD-42303 TIMP2 and TIMP3 have divergent roles in early renal tubulointerstitial injury transcription profiling by array Mus musculus 18 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42303/E-GEOD-42303.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42303/E-GEOD-42303.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42303/ E-GEOD-42080 Promoter DNA methylation pattern identifies prognostic subgroups in childhood T-cell acute lymphoblastic leukemia transcription profiling by array, methylation profiling by array Homo sapiens 68 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42080/E-GEOD-42080.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42080/ E-GEOD-42079 Genome wide methylation array analysis in T-ALL methylation profiling by array Homo sapiens 48 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42079/E-GEOD-42079.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42079/ E-GEOD-42035 The acclimation of Chlamydomonas reinhardtii to anaerobiosis involves plant and animal strategies RNA-seq of coding RNA Chlamydomonas reinhardtii 12 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42035/ E-GEOD-42008 Expression data from NcGFP ki/+, NcGFP ki/ki and wt (W4) ES cells transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42008/E-GEOD-42008.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42008/E-GEOD-42008.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42008/ E-GEOD-42000 Expression data wheat Flag Leaf at anthesis transcription profiling by array Triticum aestivum 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42000/E-GEOD-42000.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42000/E-GEOD-42000.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42000/ E-GEOD-41811 Characterization of small RNAs and their targets in Amborella trichopoda RNA-seq of coding RNA, RNA-seq of non coding RNA Amborella trichopoda 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41811/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41811/ E-GEOD-41621 Genome wide gene expression array analysis in T-ALL transcription profiling by array Homo sapiens 20 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41621/E-GEOD-41621.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41621/ E-GEOD-41295 Expression data from monocyte-derived macrophages after stimulation with mock, LPS, PolyI:C and P3C. transcription profiling by array Homo sapiens 16 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41295/E-GEOD-41295.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41295/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41295/ E-GEOD-41271 Expression profiling of 275 lung cancer specimens transcription profiling by array Homo sapiens 275 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41271/E-GEOD-41271.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41271/ E-GEOD-41249 miRNA profile of radioresistant pancreatic cancer cell lines transcription profiling by array Homo sapiens 3 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41249/E-GEOD-41249.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41249/E-GEOD-41249.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41249/ E-GEOD-41106 Expression data after irradiating mMSCs transcription profiling by array Mus musculus 18 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41106/E-GEOD-41106.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41106/E-GEOD-41106.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41106/ E-GEOD-41085 Expression data after irradiating mMSCs for 2 hours with single frequency terahertz laser source transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41085/E-GEOD-41085.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41085/E-GEOD-41085.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41085/ E-GEOD-41084 Expression data after irradiating mMSCs for 12 hours with broadband terahertz source transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41084/E-GEOD-41084.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41084/E-GEOD-41084.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41084/ E-GEOD-41083 Expression data after irradiating mMSCs for 2 hours with broadband terahertz source transcription profiling by array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41083/E-GEOD-41083.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41083/E-GEOD-41083.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41083/ E-GEOD-40828 Human lung epithelial cells progressed to malignancy through specific oncogenic manipulations transcription profiling by array Homo sapiens 15 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40828/E-GEOD-40828.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40828/ E-GEOD-40777 High risk HPV-positive lung carcinomas: molecular evidence for a pattern of pulmonary metastasis comparative genomic hybridization by array Homo sapiens 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40777/E-GEOD-40777.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40777/ E-GEOD-40579 RACK1 function in the miRNA pathway RNA-seq of non coding RNA Arabidopsis thaliana 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40579/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40579/ E-GEOD-40204 Dysregulated microRNAs in sapje and sapje-like zebrafish transcription profiling by array Danio rerio 20 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40204/E-GEOD-40204.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40204/E-GEOD-40204.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40204/ E-GEOD-39895 PGC methylome analysis revealed large, germline-specific mouse hypomethylated DNA domains with unique genomic and epigenomic features transcription profiling by array, ChIP-chip by tiling array, methylation profiling by array Mus musculus 70 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39895/E-GEOD-39895.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39895/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39895/ E-GEOD-39893 PGC methylome analysis revealed large, germline-specific mouse hypomethylated DNA domains with unique genomic and epigenomic features [ChIP-chip_NimbleGen] ChIP-chip by tiling array Mus musculus 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39893/E-GEOD-39893.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39893/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39893/ E-GEOD-39892 PGC methylome analysis revealed large, germline-specific mouse hypomethylated DNA domains with unique genomic and epigenomic features [Agilent 44Kx4 Array Expression] transcription profiling by array Mus musculus 28 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39892/E-GEOD-39892.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39892/E-GEOD-39892.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39892/ E-GEOD-39891 PGC methylome analysis revealed large, germline-specific mouse hypomethylated DNA domains with unique genomic and epigenomic features [DNA methylation_Agilent] methylation profiling by array Mus musculus 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39891/E-GEOD-39891.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39891/E-GEOD-39891.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39891/ E-GEOD-39800 PGC methylome analysis revealed large, germline-specific mouse hypomethylated DNA domains with unique genomic and epigenomic features [Agilent 44Kx1 Array Expression] transcription profiling by array Mus musculus 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39800/E-GEOD-39800.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39800/E-GEOD-39800.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39800/ E-GEOD-39794 PGC methylome analysis revealed large, germline-specific mouse hypomethylated DNA domains with unique genomic and epigenomic features [DNA methylation_NimbleGen] methylation profiling by array Mus musculus 32 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39794/E-GEOD-39794.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39794/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39794/ E-GEOD-39672 Genome-wide variation of cytosine modifications between European and African populations and the implications for complex traits methylation profiling by array Homo sapiens 133 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39672/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39672/ E-GEOD-39437 Chip-chip from budding yeast cells with Sir3 ChIP-chip by tiling array Saccharomyces cerevisiae 3 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39437/E-GEOD-39437.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39437/E-GEOD-39437.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39437/ E-GEOD-37409 Re-activation of EWS-FLI1 suppressed FOXO1 expression as a novel therapeutic strategy for Ewing´s sarcoma transcription profiling by array Homo sapiens 11 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37409/E-GEOD-37409.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37409/E-GEOD-37409.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37409/ E-GEOD-37321 Effects of Brca1 knock-down on Ezh2 targeting ChIP-chip by tiling array Mus musculus 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37321/E-GEOD-37321.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37321/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37321/ E-GEOD-36442 Functional genomic analyses of Bifidobacterium bifidum PRL2010 highlight how this microorganism interact with the human host transcription profiling by array Bifidobacterium bifidum 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36442/E-GEOD-36442.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36442/E-GEOD-36442.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36442/ E-GEOD-36320 Transcriptomes of transgenic rice expressing a constitutively active phytochrome OsPHYB-Y283H (OsYHB) allele transcription profiling by array Oryza sativa Japonica Group 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36320/E-GEOD-36320.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36320/E-GEOD-36320.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36320/ E-GEOD-35774 Suppression of the antiviral response by an influenza "histone mimic" ChIP-seq, RNA-seq of coding RNA Homo sapiens 17 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35774/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35774/ E-GEOD-35656 Affymetrix SNP array data for myelodysplastic syndrome with 5q deletion treated with lenalidomide comparative genomic hybridization by array Homo sapiens 81 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35656/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35656/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35656/ E-GEOD-35283 Highly pathogenic influenza virus inhibit Inflammatory Responses in Monocytes via Activation of the Rar-Related Orphan Receptor Alpha (RORalpa) transcription profiling by array Homo sapiens 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35283/E-GEOD-35283.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35283/E-GEOD-35283.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35283/ E-GEOD-34756 Stump project-- mRNA whole tissue; Volar versus non-volar acral skin gene expression transcription profiling by array Homo sapiens 16 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34756/E-GEOD-34756.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34756/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34756/ E-GEOD-34183 PRC2 is required for acute myeloid leukemias initiated by MLL-AF9 transcription profiling by array Mus musculus 9 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34183/E-GEOD-34183.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34183/E-GEOD-34183.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34183/ E-GEOD-34052 Circulating U2 small nuclear RNA fragments as a novel diagnostic biomarker for pancreatic and colorectal adenocarcinoma transcription profiling by array Homo sapiens 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34052/E-GEOD-34052.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34052/E-GEOD-34052.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34052/ E-GEOD-32569 Expression data for Cediranib in Metastatic ASPS transcription profiling by array Homo sapiens 12 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32569/E-GEOD-32569.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32569/E-GEOD-32569.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32569/ E-GEOD-30643 Expression data from parietal cortex of G114V genetic Creutzfeldt-Jakob disease patient transcription profiling by array Homo sapiens 2 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30643/E-GEOD-30643.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30643/E-GEOD-30643.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30643/ E-GEOD-30468 Microarray Expression Analysis of ASPP2 Knockdown in HCC-LM3 cell lines transcription profiling by array Homo sapiens 6 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30468/E-GEOD-30468.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30468/E-GEOD-30468.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30468/ E-GEOD-28599 Effects of 20 months Dietary Methionine Restriction on Gene Expression in inguinal white adipose tissue of Fischer 344 Rats transcription profiling by array Rattus norvegicus 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28599/E-GEOD-28599.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28599/ E-GEOD-27524 A functional liaison between E2F and the aberrant ETS oncogene EWS/FLI1 in Ewing's sarcoma transcription profiling by array Homo sapiens 16 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27524/E-GEOD-27524.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27524/E-GEOD-27524.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27524/ E-GEOD-27383 Marked Reduction of AKT1 Expression and Deregulation of AKT1-associated Pathways in Peripheral Blood Mononuclear Cells of Schizophrenia Patients transcription profiling by array Homo sapiens 72 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27383/E-GEOD-27383.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-27383/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27383/ E-GEOD-26227 Differential expression of keratin genes in regenerating digit of C57Bl/6 versus MRL/MpJ mice transcription profiling by array Mus musculus 24 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26227/E-GEOD-26227.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-26227/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26227/ E-GEOD-23649 GENE-EXPRESSION PROFILES OF HUMAN LIVER BIOPSIES CORRELATE WITH POST-TRANSPLANT ALLOGRAFT FUNCTION AND ARE DETERMINED BY DONOR TYPE. transcription profiling by array Homo sapiens 69 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23649/E-GEOD-23649.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23649/ E-GEOD-22673 Susceptibility of neoplastic transformation of human dental pulp stem cells DPSC in hypoxia comparative genomic hybridization by array Homo sapiens 4 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22673/E-GEOD-22673.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22673/E-GEOD-22673.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22673/ E-GEOD-21270 Genome-wide screening of temporal responsive genes induced by a low concentration of the carcinogen N-methyl-N'-nitro-N-nitrosoguanidine in a normal human cell line transcription profiling by array Homo sapiens 18 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-21270/E-GEOD-21270.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-21270/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-21270/ E-GEOD-20926 Effects of maternal Cd on the female reproductive functions, gametes development and genes expression of zebrafish transcription profiling by array Danio rerio 3 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20926/E-GEOD-20926.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-20926/E-GEOD-20926.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-20926/ E-GEOD-14697 Freeze resistance basis of winter wheat mutant lines transcription profiling by array Triticum aestivum 8 2013-07-01 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-14697/E-GEOD-14697.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-14697/E-GEOD-14697.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-14697/ E-ERAD-162 RNA sequencing of the intra erythrocytic lifecycle of Plasmodium chabaudi RNA-seq of coding RNA Plasmodium chabaudi 48 2013-07-01 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-162/ E-MTAB-1221 Transcription profling by array of Docetaxel resistant human prostate cancer cell lines established by exposure to different doses of Docetaxel transcription profiling by array Homo sapiens 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1221/E-MTAB-1221.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1221/E-MTAB-1221.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1221/ E-MTAB-1180 Transcription profiling by array of the effect of S78454, a pan histone deacetylase inhibitor, on megakaryopoiesis derived from human CD34+ cells transcription profiling by array Homo sapiens 4 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1180/E-MTAB-1180.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1180/E-MTAB-1180.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1180/ E-MEXP-3923 Transcription profiling by array of FHL124 human lens epithelial cell line treated with sulforaphane transcription profiling by array Homo sapiens 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3923/E-MEXP-3923.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3923/E-MEXP-3923.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3923/ E-MEXP-3766 Transcription profiling by array of M. musculus male liver mice cells to investigate risks in a drinking water plant transcription profiling by array Mus musculus 12 2013-06-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3766/E-MEXP-3766.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3766/ E-MEXP-3670 Transcription profiling by array of human HT29 cells infected by different wild-type rota virus strains to identify common human host genes involved in pathogenesis of different rota virus transcription profiling by array Homo sapiens 4 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3670/E-MEXP-3670.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3670/E-MEXP-3670.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3670/ E-MEXP-3669 Transcription profiling by array of mouse embryonal carcinoma cells treated with all trans retinoic acid transcription profiling by array Mus musculus 3 2013-06-30 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3669/E-MEXP-3669.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3669/ E-GEOD-48178 tiling hen2 and mtr4-HEN2 is a cofactor of the nuclear exosome in Arabidopsis transcription profiling by tiling array Arabidopsis thaliana 16 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48178/E-GEOD-48178.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48178/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48178/ E-GEOD-48134 Designed Oligooxopiperazines as Modulators of Hypoxia-Inducible Factor Signaling transcription profiling by array Homo sapiens 15 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48134/E-GEOD-48134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48134/E-GEOD-48134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48134/ E-GEOD-47777 Whole genome expression data comparison between WT and Cebpg-/- MEFs. transcription profiling by array Mus musculus 8 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47777/E-GEOD-47777.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47777/E-GEOD-47777.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47777/ E-GEOD-47402 Runx1 deficiency effect on MLL-ENL cells transcription profiling by array Mus musculus 6 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47402/E-GEOD-47402.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47402/E-GEOD-47402.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47402/ E-GEOD-47368 The expression profile of SLC transporter genes in resectable pancreatic cancer transcription profiling by RT-PCR Homo sapiens 59 2013-06-30 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47368/ E-GEOD-47350 Runx1/Cbfb deficiency effect on MLL-AF9 cells transcription profiling by array Mus musculus 8 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47350/E-GEOD-47350.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47350/E-GEOD-47350.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47350/ E-GEOD-46896 Developmentally regulated lncRNAs expression in male germline transcription profiling by array Mus musculus 18 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46896/E-GEOD-46896.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46896/ E-GEOD-46717 Enhanced upregulation of CRH mRNA expression in the rat nucleus accumbens after a delayed second injection of methamphetamine transcription profiling by array Rattus norvegicus 24 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46717/E-GEOD-46717.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46717/ E-GEOD-46403 Vitamin C induces Tet-dependent DNA demethylation in ES cells to promote a blastocyst-like methylome transcription profiling by array, methylation profiling by high throughput sequencing Mus musculus 14 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46403/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46403/E-GEOD-46403.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46403/ E-GEOD-46402 Vitamin C induces Tet-dependent DNA demethylation in ES cells to promote a blastocyst-like methylome [MeDIP-Seq] methylation profiling by high throughput sequencing Mus musculus 8 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46402/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46402/ E-GEOD-46319 Vitamin C induces Tet-dependent DNA demethylation in ES cells to promote a blastocyst-like methylome [Affymetrix] transcription profiling by array Mus musculus 14 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46319/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46319/E-GEOD-46319.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46319/ E-GEOD-46245 Comparing gene expression in CD5+CD1dhigh and CD5-CD1dhigh B cells transcription profiling by array Mus musculus 2 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46245/E-GEOD-46245.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46245/E-GEOD-46245.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46245/ E-GEOD-45709 The molecular basis of the renal and vascular consequences of Uremia transcription profiling by array Homo sapiens 40 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45709/E-GEOD-45709.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45709/E-GEOD-45709.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45709/ E-GEOD-44753 Anti-proliferative effects of continued mitogen activated protein kinase pathway inhibition following acquired resistance to BRAF and/or MEK inhibition in melanoma: Implications for treatment beyond disease progression transcription profiling by array Homo sapiens 18 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44753/E-GEOD-44753.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44753/ E-GEOD-43895 Expression analysis of MDA-MD-231 cells that express lysine racemase (lyr) when grown on D-Lysine versus L-Lysine transcription profiling by array Homo sapiens 9 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43895/E-GEOD-43895.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43895/ E-GEOD-43894 Expression analysis of 3T3 cells that express Arabidopsis-derived Diaminopimelate Decarboxylase (DDC) in response to growth on meso-2,6-diaminopimelic acid (DAP) versus L-Lysine transcription profiling by array Mus musculus 9 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43894/E-GEOD-43894.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43894/ E-GEOD-43819 Expression data from WT, sid2-1 transcription profiling by array Arabidopsis thaliana 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43819/E-GEOD-43819.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43819/E-GEOD-43819.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43819/ E-GEOD-43818 Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants transcription profiling by array Arabidopsis thaliana 21 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43818/E-GEOD-43818.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43818/E-GEOD-43818.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43818/ E-GEOD-43279 MicroRNA profiling of benign and malignant adrenocortical tumors reveals potential biomarkers of recurrence transcription profiling by array Homo sapiens, synthetic construct 18 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43279/E-GEOD-43279.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43279/E-GEOD-43279.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43279/ E-GEOD-43165 Profile of mRNAs associated with Ago (Argonaute) 1 in normoxic and hypoxic endothelial cells transcription profiling by array Homo sapiens 2 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43165/E-GEOD-43165.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43165/E-GEOD-43165.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43165/ E-GEOD-42770 Chronic alcohol consumption from adolescence-to-adulthood in mice ? Effect on gene expression in the hypothalamus transcription profiling by array Mus musculus 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42770/E-GEOD-42770.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42770/E-GEOD-42770.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42770/ E-GEOD-42760 The microRNA cluster miR-17~92 promotes TFH cell differentiation and represses subset-inappropriate gene expression transcription profiling by array Mus musculus 8 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42760/E-GEOD-42760.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42760/E-GEOD-42760.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42760/ E-GEOD-41681 Influence of plasma from normal and preeclamptic women on HUVEC cells transcription profiling by array Homo sapiens 4 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41681/E-GEOD-41681.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41681/E-GEOD-41681.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41681/ E-GEOD-41581 Truncating mutations of STAG2 define a molecular subgroup of aneuploid bladder cancers with poor prognosis. genotyping by array, comparative genomic hybridization by array Homo sapiens 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41581/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41581/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41581/ E-GEOD-41422 Alterations of DNA methylome during chemical carcinogenesis methylation profiling by array Mus musculus 11 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41422/E-GEOD-41422.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41422/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41422/ E-GEOD-41319 Study of UVB responses of SV40 transformed human lung fibroblast: Control vs. UVB irradiated transcription profiling by array Homo sapiens 10 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41319/E-GEOD-41319.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41319/E-GEOD-41319.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41319/ E-GEOD-41218 How nanomolar doses of combined metal salts (Cd, Cu, Hg) induce DNA damage and transcriptional changes in the gills of Mytilus galloprovincialis. transcription profiling by array Mytilus galloprovincialis 18 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41218/E-GEOD-41218.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41218/E-GEOD-41218.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41218/ E-GEOD-40801 Expression analysis of human aortic valve interstitial cells (hAVICs), mitral valve interstitial cells(hMVICs) and dermal firbroblasts (hDFs) transcription profiling by array Homo sapiens 3 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40801/E-GEOD-40801.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40801/E-GEOD-40801.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40801/ E-GEOD-40265 Oncogenic alterations in multiple core signaling pathways are required for glioblastoma pathogenesis in vitro and in vivo transcription profiling by array Mus musculus 23 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40265/E-GEOD-40265.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40265/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40265/ E-GEOD-39665 Giardia lamblia WB: 5'5npac control vs pPTopoII transcription profiling by array Giardia intestinalis 1 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39665/E-GEOD-39665.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39665/E-GEOD-39665.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39665/ E-GEOD-39276 Systemic analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction transcription profiling by array Trichoderma reesei 6 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39276/E-GEOD-39276.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39276/E-GEOD-39276.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39276/ E-GEOD-39120 Exon Expression Changes in the Spinal Cords of Lewis Rats with Myelin Basic Protein-Induced Experimental Autoimmune Encephalomyelitis (EAE) transcription profiling by array Rattus norvegicus 8 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39120/E-GEOD-39120.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39120/E-GEOD-39120.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39120/ E-GEOD-38873 Interaction between SNPs and DNA methylation affects gene expression in human brain methylation profiling by array Homo sapiens 168 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38873/E-GEOD-38873.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38873/ E-GEOD-38869 Cardiomyocyte MR dependent DOC/salt-mediated gene regulation transcription profiling by array Mus musculus 4 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38869/E-GEOD-38869.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38869/ E-GEOD-38056 Novel long non-coding RNAs are involved in cellular response to angiotensin II signaling ChIP-seq, RNA-seq of coding RNA Rattus norvegicus 8 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38056/E-GEOD-38056.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38056/ E-GEOD-37484 The effect of sucrose and sulfamethoxazole on the Arabidopsis transcriptome transcription profiling by array Arabidopsis thaliana 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37484/E-GEOD-37484.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37484/E-GEOD-37484.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37484/ E-GEOD-35085 Transcriptome changes following castration of Korean cattle bulls in longissimus dorsi muscle transcription profiling by array Bos taurus 9 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35085/E-GEOD-35085.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35085/E-GEOD-35085.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35085/ E-GEOD-33530 Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions comparative genomic hybridization by array environmental samples 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33530/E-GEOD-33530.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33530/E-GEOD-33530.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33530/ E-GEOD-33160 Regulatory network underlying the adaptive physiology of Pseudomonas aeruginosa under urinary tract-like conditions transcription profiling by array Pseudomonas aeruginosa PAO1 12 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33160/E-GEOD-33160.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33160/E-GEOD-33160.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33160/ E-GEOD-30820 Chromatin maps of the Drosophila melanogaster TrxG protein Ash1 and FSH ChIP-seq Drosophila melanogaster 4 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30820/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30820/ E-GEOD-28358 Gene expression changes in human peripheral blood mononuclear cells after 3 diet interventions, TMD enriched with olive oil, TMD enriched with nuts and Low fat diet. transcription profiling by array Homo sapiens 65 2013-06-30 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28358/E-GEOD-28358.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28358/E-GEOD-28358.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28358/ E-GEOD-48425 Dynamic Expression of Imprinted Genes Associates with Maternally Controlled Nutrient Allocation during Maize Endosperm Development RNA-seq of coding RNA Zea mays 12 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48425/E-GEOD-48425.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48425/ E-GEOD-48417 Identification of microRNAs dysregulated in cellular senescence driven by endogenous genotoxic stress transcription profiling by array Mus musculus 16 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48417/E-GEOD-48417.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48417/E-GEOD-48417.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48417/ E-GEOD-48416 The hierarchy of transition metal homeostasis: Iron controls manganese accumulation in a unicellular cyanobacterium. transcription profiling by array Synechocystis sp. PCC 6803 10 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48416/E-GEOD-48416.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48416/E-GEOD-48416.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48416/ E-GEOD-48415 The gene sml0013 of Synechocystis sp. strain PCC 6803 encodes for a novel subunit of the NDH1 complex that is ubiquitous distributed among cyanobacteria. transcription profiling by array Synechocystis sp. PCC 6803 8 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48415/E-GEOD-48415.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48415/E-GEOD-48415.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48415/ E-GEOD-48411 Reprogramming of mouse somatic cells into pluripotent stem cells using a combination of small molecules transcription profiling by array Mus musculus 8 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48411/E-GEOD-48411.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48411/E-GEOD-48411.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48411/ E-GEOD-48410 Determination of Sigma 54 reglons in Bacillus thuringiensis HD73 strain transcription profiling by array Bacillus thuringiensis 6 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48410/E-GEOD-48410.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48410/E-GEOD-48410.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48410/ E-GEOD-48407 Effect of wood block enrichment on gene expression data in rat liver and spleen following treatment with cyclophosphamide for 5 days transcription profiling by array Rattus norvegicus 24 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48407/E-GEOD-48407.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48407/E-GEOD-48407.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48407/ E-GEOD-48405 Human plasma: circulating microRNA after acute resistance exercise transcription profiling by array Homo sapiens 12 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48405/E-GEOD-48405.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48405/E-GEOD-48405.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48405/ E-GEOD-48377 Affymetrix SNP array data for breast cancer samples genotyping by array, comparative genomic hybridization by array Homo sapiens 8 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48377/E-GEOD-48377.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48377/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48377/ E-GEOD-48310 Gene Expression in Whole Blood of Atopic Eczema and Healthy Children at 4 years transcription profiling by RT-PCR Homo sapiens 124 2013-06-29 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48310/ E-GEOD-48279 Balloon injury-induced gene expression in common carotid arteries of wistar rat transcription profiling by array Rattus norvegicus 3 2013-06-29 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48279/E-GEOD-48279.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48279/E-GEOD-48279.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48279/ E-MEXP-3665 MicroRNA profiling by array of control and Aire-knockdown medullary thymic epithelial cells isolated from thymus of BALB-c mice. microRNA profiling by array Mus musculus 4 2013-06-28 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3665/E-MEXP-3665.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3665/ E-GEOD-48348 Gene Expression profiling in healthy population samples transcription profiling by array Homo sapiens 734 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48348/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48348/ E-GEOD-48332 Microarray gene expression analysis of mouse fetal liver erythroblasts after plek2 knockdown transcription profiling by array Mus musculus 6 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48332/E-GEOD-48332.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48332/ E-GEOD-48181 Impact of sucrose on the tolerance of phenanthrene-phytoremediation transcription profiling by array Arabidopsis thaliana 44 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48181/E-GEOD-48181.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48181/E-GEOD-48181.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48181/ E-GEOD-48027 Host directed activity of Pyrazinamide in Mycobacterium tuberculosis infection transcription profiling by array Mus musculus 16 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48027/E-GEOD-48027.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48027/E-GEOD-48027.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48027/ E-GEOD-46433 Promoter directionality is controlled by U1 snRNP and polyadenylation signals other, RNA-seq of coding RNA Mus musculus 6 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46433/E-GEOD-46433.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46433/ E-GEOD-46249 Physiological change under OsHV-1 contamination in Pacific oyster Crassostrea gigas through massive mortality events on fields transcription profiling by array Crassostrea gigas 16 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46249/E-GEOD-46249.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46249/E-GEOD-46249.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46249/ E-GEOD-45562 Time course experiment of 17?-estradiol (E2) treatment in the zebrafish transcription profiling by array Danio rerio 12 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45562/E-GEOD-45562.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45562/E-GEOD-45562.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45562/ E-GEOD-45132 The developmental life cycle of the enteric parasite Entamoeba invadens: transcriptome analysis reveals a crucial role for phospholipase D in stage conversion RNA-seq of coding RNA Entamoeba invadens 14 2013-06-28 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45132/ E-GEOD-44959 CLIP-seq of S. cerevisiae Drn1-TAP and Dbr1-TAP RNA-seq of coding RNA Saccharomyces cerevisiae 4 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44959/E-GEOD-44959.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44959/ E-GEOD-41742 Expression changes between loricrin knockout and wildtype P0 transcription profiling by array Mus musculus 4 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41742/E-GEOD-41742.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41742/E-GEOD-41742.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41742/ E-GEOD-40115 Classifications within Molecular Subtypes Enables Identification of BRCA1/BRCA2 Mutation Carriers by RNA Tumor Profiling transcription profiling by array Homo sapiens 275 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40115/E-GEOD-40115.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40115/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40115/ E-GEOD-34137 Multicolor miRNA fluorescence in situ hybridization for tumor differential diagnosis RNA-seq of non coding RNA Homo sapiens 40 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34137/E-GEOD-34137.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34137/ E-GEOD-30754 Genomic Characterization of Bladder Cancer Cell Lines using CGH Arrays comparative genomic hybridization by array Homo sapiens 4 2013-06-28 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30754/E-GEOD-30754.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30754/E-GEOD-30754.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30754/ E-MTAB-1188 iPSCs Comparation transcription profiling by array Mus musculus 5 2013-06-27 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1188/E-MTAB-1188.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1188/ E-MEXP-3871 Transcription profiling by array of mouse bone marrow derived macrophages treated with GW3965 or vehicle for 18 hours and then stimulated with IFN-gamma or PBS for 6 hours transcription profiling by array Mus musculus 8 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3871/E-MEXP-3871.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3871/E-MEXP-3871.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3871/ E-MEXP-3745 Transcription profiling by array of murine thymus medulla in the absence and presence of acute graft-versus-host disease to investigate gene expression profile of medullary thymic epithelial cells with high surface densitiy of MHC class II transcription profiling by array Mus musculus 24 2013-06-27 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3745/E-MEXP-3745.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3745/ E-GEOD-48365 S-adenosylmethionine modifies cocaine-induced DNA methylation and increases locomotor sensitization in mice transcription profiling by array Mus musculus 16 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48365/E-GEOD-48365.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48365/ E-GEOD-48345 Pruning of the adipocyte cistrome by hematopoietic master regulator PU.1 ChIP-seq, transcription profiling by array Mus musculus 13 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48345/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48345/E-GEOD-48345.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48345/ E-GEOD-48344 Pruning of the adipocyte cistrome by hematopoietic master regulator PU.1 (expression) transcription profiling by array Mus musculus 8 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48344/E-GEOD-48344.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48344/E-GEOD-48344.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48344/ E-GEOD-48343 Pruning of the adipocyte cistrome by hematopoietic master regulator PU.1 (ChIP-seq) ChIP-seq Mus musculus 5 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48343/E-GEOD-48343.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48343/ E-GEOD-48329 Interleukin-17 mediated paracrine network promote tumor resistance to anti-angiogenic therapy transcription profiling by array Mus musculus 20 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48329/E-GEOD-48329.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48329/E-GEOD-48329.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48329/ E-GEOD-48316 Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing [NimbleGen Array data] other Bacillus anthracis str. Ames 24 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48316/E-GEOD-48316.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48316/E-GEOD-48316.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48316/ E-GEOD-48315 Expression data comparing dp53R-shSCR and dp53R-shARF mouse embryonic fibroblasts transcription profiling by array Mus musculus 6 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48315/E-GEOD-48315.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48315/E-GEOD-48315.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48315/ E-GEOD-48312 Comparison of gene expression in wild type Drosophila testes with various meiotic arrest mutants transcription profiling by array Drosophila melanogaster 9 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48312/E-GEOD-48312.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48312/E-GEOD-48312.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48312/ E-GEOD-48311 Time-dependent changes in gene expression after endotoxinic challenge followed by LR12-scrambled or LR12 treatment. transcription profiling by array Macaca fascicularis 56 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48311/E-GEOD-48311.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48311/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48311/ E-GEOD-48308 Overexpression of androgen receptor enhances the binding of the receptor to the chromatin in prostate cancer ChIP-seq Homo sapiens 13 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48308/E-GEOD-48308.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48308/ E-GEOD-48307 Orchestrated intron retention regulates normal granulocyte differentiation transcription profiling by array, RNA-seq of coding RNA Homo sapiens, Mus musculus 11 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48307/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48307/E-GEOD-48307.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48307/ E-GEOD-48306 Orchestrated intron retention regulates normal granulocyte differentiation [Affymetrix arrays] transcription profiling by array Mus musculus 6 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48306/E-GEOD-48306.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48306/E-GEOD-48306.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48306/ E-GEOD-48305 Orchestrated intron retention regulates normal granulocyte differentiation [RNA-Seq] RNA-seq of coding RNA Homo sapiens, Mus musculus 5 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48305/E-GEOD-48305.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48305/ E-GEOD-48289 Homo sapiens Ewing sarcoma cell line RD-ES: Negative control vs. HDGF knockdown transcription profiling by array Homo sapiens 1 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48289/E-GEOD-48289.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48289/E-GEOD-48289.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48289/ E-GEOD-47870 Characterization of the molecular interplay between Moraxella catarrhalis and human respiratory tract epithelial cells: Expression Moraxella catarrhalis strain BBH18 during adherence to human phanryngeal epithelial Detroit 562 cells transcription profiling by array Moraxella catarrhalis 11 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47870/E-GEOD-47870.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47870/E-GEOD-47870.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47870/ E-GEOD-47711 Characterization of the molecular interplay between Moraxella catarrhalis and human respiratory tract epithelial cells: Expression response of human phanryngeal epithelial Detroit 562 cells to adherent Moraxella catarrhalis strain BBH18 transcription profiling by array Homo sapiens 12 2013-06-27 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47711/E-GEOD-47711.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47711/ E-GEOD-46902 FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis ChIP-seq Homo sapiens 2 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46902/E-GEOD-46902.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46902/ E-GEOD-46706 Expression data generated from post-mortem human brain tissue originating from neurologically and neuropathologically control individuals transcription profiling by array Homo sapiens 932 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46706/E-GEOD-46706.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46706/ E-GEOD-46362 Expression data from ETV6-RUNX1-positive Reh leukemic cells after overexpression of miR-125b, miR-100 and miR-99a levels in different combinations transcription profiling by array Homo sapiens 11 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46362/E-GEOD-46362.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46362/E-GEOD-46362.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46362/ E-GEOD-45975 Bach2 represses effector programmes to stabilize Treg-mediated immune homeostasis ChIP-seq, RNA-seq of coding RNA Mus musculus 12 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45975/E-GEOD-45975.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45975/ E-GEOD-45655 Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 trigger alternative transcriptional host responses transcription profiling by array Lactococcus lactis subsp. cremoris UC509.9 30 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45655/E-GEOD-45655.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45655/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45655/ E-GEOD-45167 Ultra-deep profiling of alternatively spliced Drosophila Dscam isoforms by circularization-assisted multi-segment sequencing other Drosophila melanogaster 7 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45167/E-GEOD-45167.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45167/ E-GEOD-44862 Integrated Genetic and Epigenetic Analysis of Childhood ALL Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype methylation profiling by array Homo sapiens 380 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44862/E-GEOD-44862.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44862/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44862/ E-GEOD-44860 Integrated Genetic and Epigenetic Analysis of Childhood ALL Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype [194 samples] methylation profiling by array Homo sapiens 194 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44860/E-GEOD-44860.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44860/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44860/ E-GEOD-44420 BACH2 mediates negative selection and p53-dependent tumor suppression at the pre-B cell receptor checkpoint. ChIP-seq Homo sapiens 3 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44420/E-GEOD-44420.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44420/ E-GEOD-43909 AGO-PAR-CLIP of DG75 and BCBL-1 RNA-seq of non coding RNA Homo sapiens 4 2013-06-27 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43909/ E-GEOD-43748 Transcriptional profiles of psychostimulant reinforcement in rats transcription profiling by array Rattus norvegicus 63 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43748/E-GEOD-43748.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43748/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43748/ E-GEOD-43246 Gene expression profilling of six species of Brassica and early four generation of resynthesized B. napus (F1-F4) RNA-seq of coding RNA Brassica carinata, Brassica juncea, Brassica napus, Brassica nigra, Brassica oleracea, Brassica rapa 10 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43246/E-GEOD-43246.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43246/ E-GEOD-42923 FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency methylation profiling by high throughput sequencing, RNA-seq of coding RNA Mus musculus 12 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42923/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42923/ E-GEOD-42197 Leishmania donovani amastigotes: Nelfinavir (NFV)-sensitive (control) vs Nelfinavir-resistant transcription profiling by array, comparative genomic hybridization by array Leishmania donovani 6 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42197/E-GEOD-42197.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42197/E-GEOD-42197.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42197/ E-GEOD-42196 Leishmania donovani amastigotes: Nelfinavir (NFV)-sensitive (control) vs Nelfinavir-resistant [RNA expression profiling] transcription profiling by array Leishmania donovani 3 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42196/E-GEOD-42196.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42196/E-GEOD-42196.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42196/ E-GEOD-42195 Leishmania donovani amastigotes: Nelfinavir (NFV)-sensitive (control) vs Nelfinavir-resistant [Comparative Genomic Hybridization (DNA) profiling] comparative genomic hybridization by array Leishmania donovani 3 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42195/E-GEOD-42195.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42195/E-GEOD-42195.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42195/ E-GEOD-42055 Genome-wide analysis of mRNA expression differences from various stem cell enriched sub-populations of mouse mammary epithelial cells transcription profiling by array Mus musculus 34 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42055/E-GEOD-42055.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42055/ E-GEOD-41758 The Lin28b-let-7-Hmga2 axis determines the higher self-renewal potential of fetal haematopoietic stem cells transcription profiling by array Mus musculus 8 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41758/E-GEOD-41758.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41758/E-GEOD-41758.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41758/ E-GEOD-38961 Gene expression of LDS-OECs transcription profiling by array Homo sapiens 6 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38961/E-GEOD-38961.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38961/E-GEOD-38961.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38961/ E-GEOD-38295 Integrated Genetic and Epigenetic Analysis of Childhood ALL Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype [186 samples] methylation profiling by array Homo sapiens 186 2013-06-27 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38295/E-GEOD-38295.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38295/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38295/ E-GEOD-48281 Changes in gene expression in HOS and U2-OS cell lines after exposure to 600 ?g/mL OGE transcription profiling by array Homo sapiens 4 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48281/E-GEOD-48281.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48281/E-GEOD-48281.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48281/ E-GEOD-48273 Gene Expression in Perivenous Hepatocytes: A Laser Capture Microdissection and Transcriptomic Analysis. transcription profiling by array Mus musculus 9 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48273/E-GEOD-48273.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48273/ E-GEOD-48266 Expression data from the rat knee articular cartilage at different developmental stages transcription profiling by array Rattus norvegicus 21 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48266/E-GEOD-48266.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48266/E-GEOD-48266.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48266/ E-GEOD-48192 Analyses of endogenous rna substrates of xrn and exosome and ptgs pathways; Integrating RNA Quality Control and RNA Silencing Pathways transcription profiling by array Arabidopsis thaliana 60 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48192/E-GEOD-48192.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48192/E-GEOD-48192.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48192/ E-GEOD-46828 Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia comparative genomic hybridization by array Homo sapiens 40 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46828/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46828/ E-GEOD-45505 Muscleblind-like proteins regulate embryonic stem cell-specific alternative splicing and reprogramming RNA-seq of coding RNA Homo sapiens, Mus musculus 6 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45505/E-GEOD-45505.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45505/ E-GEOD-45504 Muscleblind-like proteins regulate embryonic stem cell-specific alternative splicing and reprogramming II RNA-seq of coding RNA Homo sapiens, Mus musculus 5 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45504/E-GEOD-45504.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45504/ E-GEOD-45503 Muscleblind-like proteins regulate embryonic stem cell-specific alternative splicing and reprogramming I RNA-seq of coding RNA Mus musculus 1 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45503/E-GEOD-45503.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45503/ E-GEOD-43980 Derivation of monkey parthenogenetic haploid embryonic stem cells transcription profiling by array, comparative genomic hybridization by array Macaca fascicularis 14 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43980/E-GEOD-43980.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43980/E-GEOD-43980.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43980/ E-GEOD-43979 CGH analysis of monkey PG-haESCs (parthenogenic haploid embryonic stem cells) comparative genomic hybridization by array Macaca fascicularis 4 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43979/E-GEOD-43979.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43979/E-GEOD-43979.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43979/ E-GEOD-43978 mRNA expression data from monkey PG-haESCs, ICSI-derived ESCs and somatic fibroblasts transcription profiling by array Macaca fascicularis 10 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43978/E-GEOD-43978.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43978/E-GEOD-43978.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43978/ E-GEOD-43538 Spirodiclofen resistance in the spider mite Tetranychus urticae transcription profiling by array Tetranychus urticae 5 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43538/E-GEOD-43538.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43538/E-GEOD-43538.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43538/ E-GEOD-41793 Differential expression in Wn5a and vector transduced 4T1 cells. transcription profiling by array, RNA-seq of coding RNA Mus musculus 6 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41793/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41793/E-GEOD-41793.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41793/ E-GEOD-41792 Differential expression in Wn5a and vector transduced 4T1 cells. [RNA-Seq] RNA-seq of coding RNA Mus musculus 2 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41792/E-GEOD-41792.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41792/ E-GEOD-41791 Differential expression in Wn5a and vector transduced 4T1 cells. [Affymetrix microarray data] transcription profiling by array Mus musculus 4 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41791/E-GEOD-41791.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41791/E-GEOD-41791.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41791/ E-GEOD-41540 Genes induced after BDV infection in Sprague Dawley and Lewis rats transcription profiling by array Rattus norvegicus 12 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41540/E-GEOD-41540.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41540/E-GEOD-41540.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41540/ E-GEOD-38942 VSL#3 protects against development of visceral pain in the neonatal maternal separation model: A whole genome microarray study transcription profiling by array Rattus norvegicus 12 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38942/E-GEOD-38942.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38942/E-GEOD-38942.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38942/ E-GEOD-33801 Environmental and simulation facility conditions can modulate a behavioral-driven altered gravity response of Drosophila imagoes transcriptome transcription profiling by array Drosophila melanogaster 50 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33801/E-GEOD-33801.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33801/E-GEOD-33801.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-33801/ E-GEOD-31192 Molecular Signature of Pregnancy Associated Breast Cancer (PABC) transcription profiling by array Homo sapiens 33 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31192/E-GEOD-31192.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-31192/E-GEOD-31192.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31192/ E-GEOD-29304 Gene expression profile analysis of inducible melanotic and amelanotic melanoma in mice transcription profiling by array Mus musculus 24 2013-06-26 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29304/E-GEOD-29304.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-29304/E-GEOD-29304.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-29304/ E-ERAD-5 Tr-seq to test MICROME single carbon source RNA-seq of coding RNA, RNA-seq of non coding RNA Salmonella enterica subsp. enterica serovar Enteritidis, Salmonella enterica subsp. enterica serovar Typhimurium 21 2013-06-26 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-5/ E-MTAB-1262 Transcription profiling by array of human MDA-MB-231-luc2 cells treated with PPARd-specific agnost GW501516 vs untreated controls transcription profiling by array Homo_sapiens 8 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1262/E-MTAB-1262.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1262/E-MTAB-1262.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1262/ E-GEOD-48258 Changes in gene expression induced by CDK9 inhibition alone and in combination with fludarabine transcription profiling by array Homo sapiens 12 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48258/E-GEOD-48258.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48258/E-GEOD-48258.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48258/ E-GEOD-48228 Differential expression in adipose derived stem cells transcription profiling by array Homo sapiens 16 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48228/E-GEOD-48228.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48228/E-GEOD-48228.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48228/ E-GEOD-48227 Differential expression of microRNAs in adipose stem cells transcription profiling by array Homo sapiens 8 2013-06-25 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48227/E-GEOD-48227.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48227/ E-GEOD-48220 Differential expression of genes in adipose derived stem cells transcription profiling by array Homo sapiens 8 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48220/E-GEOD-48220.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48220/E-GEOD-48220.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48220/ E-GEOD-48208 Genome-wide transcriptome analysis of maize (Zea mays c.v. Nathan) plants infected by Colletotrichum graminicola strains. RNA-seq of coding RNA Zea mays 3 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48208/E-GEOD-48208.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48208/ E-GEOD-48139 Differential gene expression in the Lacrimal gland during development and onset of xerostomia in Sjögren?s syndrome-like disease of the C57BL/6.NOD-Aec1Aec2 mouse. transcription profiling by array Mus musculus 26 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48139/E-GEOD-48139.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48139/E-GEOD-48139.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48139/ E-GEOD-47387 Acetylated histone H3K56 interacts with Oct4 to promote mouse embryonic stem cell pluripotency ChIP-seq Mus musculus 2 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47387/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47387/ E-GEOD-46908 Identification of LIN28-bound mRNAs reveals features of target recognition and regulation RNA-seq of coding RNA Homo sapiens 1 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46908/E-GEOD-46908.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46908/ E-GEOD-46449 Expression data from Patients with Bipolar (BP) Disorder and Matched Control Subjects transcription profiling by array Homo sapiens 88 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46449/E-GEOD-46449.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46449/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46449/ E-GEOD-45673 FoxO1 Controls Effector to Memory Transition and Maintenance of Functional CD8 T-Cell Memory transcription profiling by array Mus musculus 8 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45673/E-GEOD-45673.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45673/E-GEOD-45673.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45673/ E-GEOD-43140 Functional centromere lost centromeric specific sequences but gain new sequences from nearby chromosomal arm. ChIP-seq, methylation profiling by high throughput sequencing Zea mays 4 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43140/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43140/ E-GEOD-43138 Fine structure analysis and epigenetic properties of a de novo centromere on a chromosome fragment in maize ChIP-seq, methylation profiling by high throughput sequencing Zea mays 3 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43138/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43138/ E-GEOD-42426 Targeting the treponemal microbiome of digital dermatitis infections by deep coverage pyrosequencing DNA-seq Bos taurus 36 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42426/E-GEOD-42426.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42426/ E-GEOD-42296 Distinct, non-overlapping gene panels of peripheral blood gene expression predict response to infliximab therapy in rheumatoid arthritis and Crohn's disease transcription profiling by array Homo sapiens 78 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42296/E-GEOD-42296.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42296/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42296/ E-GEOD-40805 Intestinal Salmonella Typhimurium infection leads to miR-29a induced Caveolin 2 regulation transcription profiling by array Sus scrofa 19 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40805/E-GEOD-40805.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40805/E-GEOD-40805.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40805/ E-GEOD-40804 Intestinal Salmonella Typhimurium infection leads to miR-29a induced Caveolin 2 regulation [mRNA] transcription profiling by array Sus scrofa 9 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40804/E-GEOD-40804.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40804/E-GEOD-40804.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40804/ E-GEOD-40803 Intestinal Salmonella Typhimurium infection leads to miR-29a induced Caveolin 2 regulation [miRNA] transcription profiling by array Sus scrofa 10 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40803/E-GEOD-40803.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40803/E-GEOD-40803.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40803/ E-GEOD-40605 Histone Demethylase Lsd1 Represses Hematopoietic Stem and Progenitor Cell Signatures During Blood Cell Maturation. transcription profiling by array Mus musculus 16 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40605/E-GEOD-40605.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40605/E-GEOD-40605.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40605/ E-GEOD-40440 Histone Demethylase Lsd1 is Required to Repress Hematopoietic Stem and Progenitor Cell Signatures During Blood Cell Maturation ChIP-seq Mus musculus 14 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40440/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40440/ E-GEOD-40284 Gene expression data of Lsd1fl/fl and Lsd1fl/fl Mx1Cre CD150+ CD48- lin- c-Kit+ Sca-1+ LT-HSCs transcription profiling by array Mus musculus 6 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40284/E-GEOD-40284.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40284/E-GEOD-40284.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40284/ E-GEOD-40283 Gene expression data of Lsd1fl/fl and Lsd1fl/fl EpoRCre CD71_high / c-Kit_high pro-erythroblasts. transcription profiling by array Mus musculus 4 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40283/E-GEOD-40283.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40283/E-GEOD-40283.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40283/ E-GEOD-40282 Gene expression data of Lsd1fl/fl and Lsd1fl/fl Mx1Cre Gr1dim Mac1 granulocytic progenitor cells. transcription profiling by array Mus musculus 6 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40282/E-GEOD-40282.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40282/E-GEOD-40282.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40282/ E-GEOD-39683 Small nucleolar RNAs and small Cajal body-specific RNAs show distinct transcriptional profiles in the context of the molecular heterogeneity of multiple myeloma. transcription profiling by array Homo sapiens 67 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39683/E-GEOD-39683.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39683/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39683/ E-GEOD-38907 KSRP-mediated Transcriptome reshaping RNA-seq of coding RNA Mus musculus 3 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38907/E-GEOD-38907.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38907/ E-GEOD-36000 Mantle Cell Lymphoma transcription profiling by array Homo sapiens 38 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36000/E-GEOD-36000.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36000/E-GEOD-36000.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36000/ E-GEOD-34412 A Renewable Tissue Resource of Phenotypically Stable, Biologically and Ethnically Diverse, Patient-derived Human Breast Cancer Xenografts transcription profiling by array Homo sapiens 60 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-34412/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34412/ E-GEOD-22587 Genome-wide microRNA analysis of NPC and non-NPC specimens gene expression transcription profiling by array Homo sapiens 12 2013-06-25 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22587/E-GEOD-22587.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22587/ E-MTAB-1680 Transcription profiling by array of mineralising murine vascular smooth muscle cell cultures over a nine day culture period to identify new regulators of vascular mineralization transcription profiling by array Mus musculus 8 2013-06-24 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1680/E-MTAB-1680.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1680/ E-MTAB-1452 Transcription profiling by array of pure populations of human megakaryocytes (MK) derived from embryonic stem cells (MKES), fetal liver (MKFL), cord blood (MKCB) and adult blood (MKAD) transcription profiling by array Homo sapiens 30 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1452/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1452/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1452/ E-GEOD-48237 Innate and antigen-specific cytotoxic cells and Paradoxical HIV-associated Tuberculosis Immune reconstitution inflammatory syndrome (TB-IRIS) transcription profiling by array Homo sapiens 14 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48237/E-GEOD-48237.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48237/E-GEOD-48237.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48237/ E-GEOD-48221 A small RNA activates CFA synthase by a reprogrammable mechanism of mRNA stabilization transcription profiling by array Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 4 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48221/E-GEOD-48221.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48221/E-GEOD-48221.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48221/ E-GEOD-46693 mTORC1 couples immune signals and metabolic programming to establish Treg cell function transcription profiling by array Mus musculus 8 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46693/E-GEOD-46693.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46693/E-GEOD-46693.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46693/ E-GEOD-46203 Transcriptional effects of CTGF inhibition and gemcitabine in the KPC mouse model of pancreatic ductal adenocarcinoma transcription profiling by array Mus musculus 24 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46203/E-GEOD-46203.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46203/E-GEOD-46203.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46203/ E-GEOD-43663 The global gene expression profile of superficial zone articular cartilage in P1 wildtype and Prg4 transgenic mice transcription profiling by array Mus musculus 6 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43663/E-GEOD-43663.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43663/ E-GEOD-43151 Characterization of gene expression profiles at low and very low doses of ionizing radiation transcription profiling by array Homo sapiens 121 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43151/E-GEOD-43151.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43151/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43151/ E-GEOD-41618 Disruption of immune responses hindered cardiac repair in zebrafish transcription profiling by array Danio rerio 3 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41618/E-GEOD-41618.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41618/E-GEOD-41618.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41618/ E-GEOD-36814 Role for DNA methylation in response to Gata4 activation in embryonic stem cell-derived mesoderm transcription profiling by array Mus musculus 20 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36814/E-GEOD-36814.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36814/E-GEOD-36814.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36814/ E-GEOD-36313 DNA Methylation Restricts Lineage-Specific Functions of Transcription Factor Gata4 during Embryonic Stem Cell Differentiation transcription profiling by array Mus musculus 108 2013-06-24 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36313/E-GEOD-36313.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36313/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36313/ E-GEOD-47109 BreastPRS is a Gene Expression Assay that Stratifies Intermediate-Risk Oncotype DX Patients into High or Low-Risk for Disease Recurrence transcription profiling by array Homo sapiens 246 2013-06-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47109/E-GEOD-47109.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47109/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47109/ E-GEOD-45704 Expression data from FDC-induced myeloid cells (FDMCs) transcription profiling by array, unknown experiment type Mus musculus 1 2013-06-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45704/E-GEOD-45704.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45704/E-GEOD-45704.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45704/ E-GEOD-45453 Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity; implications for possible immune adjuvant therapy RNA-seq of coding RNA Homo sapiens 2 2013-06-23 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45453/E-GEOD-45453.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45453/ E-GEOD-48217 Identification of Adaptive mutations in the influenza A virus non-structural 1 gene that increase cytoplasmic localization and differentially regulate host gene expression transcription profiling by array Mus musculus 42 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48217/E-GEOD-48217.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48217/E-GEOD-48217.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48217/ E-GEOD-48200 Influenza A/Hong Kong/156/1997(H5N1) virus NS1 gene mutations F103L and M106I both increase IFN antagonism, virulence and cytoplasmic localization but differ in binding to RIG-I and CPSF30 transcription profiling by array Homo sapiens, Mus musculus 36 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48200/E-GEOD-48200.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48200/E-GEOD-48200.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48200/ E-GEOD-48191 The gene expression profiles of WT and NML-KO livers transcription profiling by array Mus musculus 10 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48191/E-GEOD-48191.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48191/E-GEOD-48191.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48191/ E-GEOD-48190 Affymetrix_SNP6_Allelotyping genotyping by array Homo sapiens 4 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48190/E-GEOD-48190.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48190/E-GEOD-48190.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48190/ E-GEOD-47498 Increased X-ray sensitivity and sustained chromosomal stability in Ataxia Telangiectasia-derived induced pluripotent stem (AT-iPS) cells genotyping by array Homo sapiens 5 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47498/E-GEOD-47498.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47498/ E-GEOD-47435 Analysis of Drug Resistant Cell Lines transcription profiling by array Homo sapiens 2 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47435/E-GEOD-47435.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47435/E-GEOD-47435.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47435/ E-GEOD-38877 Worms spun in centrifuge at elevated g values transcription profiling by array Caenorhabditis elegans 9 2013-06-22 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38877/E-GEOD-38877.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38877/ E-MTAB-1026 Transcription profiling by array of human non-tumoral Formalin-Fixed Paraffin Embedded colon samples, either positive or negative to diverticulosis transcription profiling by array Homo sapiens 64 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1026/E-MTAB-1026.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1026/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1026/ E-MTAB-990 Transcription profiling by array of formalin-fixed and paraffin-embedded (FFPE) tumor samples. transcription profiling by array Homo sapiens 688 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-990/E-MTAB-990.processed.2.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-990/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-990/ E-MEXP-3806 Comparative genomic hybridization by array of DNA samples from human pulmonary carcinoids with a favourable or poor disease outcome comparative genomic hybridization by array Homo sapiens 10 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3806/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3806/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3806/ E-MEXP-3269 Transcription profiling by array of Arabidopsis plants with GRF7 knock down transcription profiling by array Arabidopsis thaliana 4 2013-06-21 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3269/E-MEXP-3269.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3269/ E-GEOD-48203 Expression data from tumoral thymocytes and DP thymocytes expressing an activated form of b-catenin in mouse T cells transcription profiling by array Mus musculus 9 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48203/E-GEOD-48203.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48203/E-GEOD-48203.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48203/ E-GEOD-48198 Transcriptome analysis of Arthrobacter in the phyllosphere transcription profiling by array Arthrobacter chlorophenolicus A6 16 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48198/E-GEOD-48198.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48198/E-GEOD-48198.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48198/ E-GEOD-48186 MiR-210 is induced by Oct-2, regulates B-cells and inhibits autoantibody production transcription profiling by array Mus musculus 45 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48186/E-GEOD-48186.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48186/ E-GEOD-48170 Transcriptomic effects of early life and peripubertal dietary vitamin D deficiency on mouse ovaries and pituitary glands transcription profiling by array Mus musculus 24 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48170/E-GEOD-48170.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48170/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48170/ E-GEOD-48169 Transcriptomic effects of early life and peripubertal dietary vitamin D deficiency on mouse pituitary gland transcription profiling by array Mus musculus 12 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48169/E-GEOD-48169.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48169/E-GEOD-48169.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48169/ E-GEOD-48167 Transcriptomic effects of early life and peripubertal dietary vitamin D deficiency on mouse ovaries transcription profiling by array Mus musculus 12 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48167/E-GEOD-48167.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48167/E-GEOD-48167.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48167/ E-GEOD-48161 Mapping ER? genomic binding sites reveals unique genomic features and identifies EBF1 as an ER? interactor ChIP-seq, RNA-seq of coding RNA Homo sapiens 8 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48161/E-GEOD-48161.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48161/ E-GEOD-48159 Mapping ER? genomic binding sites reveals unique genomic features and identifies EBF1 as an ER? interactor [Gro-Seq] RNA-seq of coding RNA Homo sapiens 4 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48159/E-GEOD-48159.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48159/ E-GEOD-48157 Effect of chlorination on toxicity of wastewater effluents from different treatment systems to HepG2 human hepatoma cells transcription profiling by array Homo sapiens 16 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48157/E-GEOD-48157.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48157/E-GEOD-48157.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48157/ E-GEOD-48152 Allelic heterogeneity and more detailed analyses of known loci explain additional phenotypic variation and reveal complex patterns of association. transcription profiling by array Homo sapiens 705 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48152/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48152/ E-GEOD-48151 Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coliK12 through accurate full-length transcripts assembling RNA-seq of coding RNA Escherichia coli 15 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48151/E-GEOD-48151.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48151/ E-GEOD-48149 Lung tissues in systemic sclerosis have gene expression patterns unique to pulmonary fibrosis and pulmonary hypertension transcription profiling by array Homo sapiens 53 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48149/E-GEOD-48149.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48149/ E-GEOD-48147 Effect of maternal methionine supplementation on the transcriptome of bovine preimplantation embryos RNA-seq of coding RNA Bos taurus 16 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48147/E-GEOD-48147.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48147/ E-GEOD-48140 mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition other, RNA-seq of coding RNA Caenorhabditis brenneri, Caenorhabditis briggsae, Caenorhabditis elegans, Caenorhabditis remanei 48 2013-06-21 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48140/ E-GEOD-48136 Functional analysis of transcriptome dynamics during growth in Angus cattle longissimus muscle transcription profiling by array Bos taurus 55 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48136/E-GEOD-48136.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48136/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48136/ E-GEOD-48135 Lachancea kluyveri (formerly Saccharomyces kluyveri); Growth on different nitrogen sources. transcription profiling by array Lachancea kluyveri 16 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48135/E-GEOD-48135.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48135/E-GEOD-48135.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48135/ E-GEOD-48096 Mapping ER? genomic binding sites reveals unique genomic features and identifies EBF1 as an ER? interactor [ChIP-Seq] ChIP-seq Homo sapiens 4 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48096/E-GEOD-48096.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48096/ E-GEOD-47708 Genome wide expression analysis of Ctbp2 knock down mouse F9 cells RNA-seq of coding RNA Mus musculus 6 2013-06-21 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47708/ E-GEOD-47560 Leukemia associated mutant Wilms' tumour gene 1 protein promotes expansion of human hematopoietic progenitor cells transcription profiling by array Homo sapiens 11 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47560/E-GEOD-47560.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47560/ E-GEOD-47173 Microarray analysis of P. aeruginosa PAO1 expression PA5060 (phaF) on pJN105 transcription profiling by array Pseudomonas aeruginosa 4 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47173/E-GEOD-47173.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47173/E-GEOD-47173.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47173/ E-GEOD-46803 Profiling of RNA Pol II occupancy in Drosophila neural stem cell populations using TaDa (Targeted DamID) ChIP-chip by tiling array Drosophila melanogaster 9 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46803/E-GEOD-46803.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46803/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46803/ E-GEOD-46326 Preimplantation Factor Effect on Endometrial and Decidual Cells transcription profiling by array Homo sapiens 4 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46326/E-GEOD-46326.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46326/E-GEOD-46326.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46326/ E-GEOD-45001 Gene expression profiling of tumor stroma in human intrahepatic cholangiocarcinoma transcription profiling by array Homo sapiens 20 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45001/E-GEOD-45001.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45001/E-GEOD-45001.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45001/ E-GEOD-44712 Early-Onset Preeclampsia Placentas and Controls transcription profiling by array, methylation profiling by array Homo sapiens 56 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44712/E-GEOD-44712.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44712/ E-GEOD-44711 Gene expression in Early-Onset Preeclampsia Placentas and Controls transcription profiling by array Homo sapiens 16 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44711/E-GEOD-44711.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44711/ E-GEOD-44667 DNA methylation in Early Onset Preeclamptic placentas methylation profiling by array Homo sapiens 40 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44667/E-GEOD-44667.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44667/ E-GEOD-43226 Utility of HM450 BeadArray on Mouse Samples methylation profiling by array Homo sapiens, Mus musculus 15 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43226/E-GEOD-43226.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43226/ E-GEOD-43174 RAP1 protects from obesity, diabetes and metabolic syndrome through its extra telomeric role regulating gene expression transcription profiling by array Mus musculus 20 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43174/E-GEOD-43174.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43174/E-GEOD-43174.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43174/ E-GEOD-43173 RAP1 protects from obesity, diabetes and metabolic syndrome through its extra telomeric role regulating gene expression (old mouse liver) transcription profiling by array Mus musculus 4 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43173/E-GEOD-43173.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43173/E-GEOD-43173.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43173/ E-GEOD-43172 RAP1 protects from obesity, diabetes and metabolic syndrome through its extra telomeric role regulating gene expression (young mouse white fat) transcription profiling by array Mus musculus 8 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43172/E-GEOD-43172.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43172/E-GEOD-43172.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43172/ E-GEOD-43171 RAP1 protects from obesity, diabetes and metabolic syndrome through its extra telomeric role regulating gene expression (young mouse liver) transcription profiling by array Mus musculus 8 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43171/E-GEOD-43171.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43171/E-GEOD-43171.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43171/ E-GEOD-42406 Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines. transcription profiling by array Homo sapiens 10 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42406/E-GEOD-42406.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42406/E-GEOD-42406.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42406/ E-GEOD-40456 Interaction of Wnt signaling with Smad signaling during myogenic differentiation in mouse myoblast cells transcription profiling by array Mus musculus 3 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40456/E-GEOD-40456.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40456/E-GEOD-40456.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40456/ E-GEOD-39802 Nucleosome mapping in Saccharomyces cerevisiae in different conditions ChIP-chip by tiling array Saccharomyces cerevisiae 12 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39802/E-GEOD-39802.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39802/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39802/ E-GEOD-39566 Genome wide profiling of RNA polymerase III in Saccharomyces cerevisiae ChIP-seq Saccharomyces cerevisiae 6 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39566/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39566/ E-GEOD-38345 Gene expression analysis of bovine oocytes with high developmental competence obtained from FSH-stimulated animals transcription profiling by array Bos taurus 36 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38345/E-GEOD-38345.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38345/E-GEOD-38345.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38345/ E-GEOD-37739 CD8+ T cells: IL-10+ VS IL-10- transcription profiling by array Mus musculus 2 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37739/E-GEOD-37739.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37739/E-GEOD-37739.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37739/ E-GEOD-32539 Molecular phenotyping of the idiopathic interstitial pneumonias identifies two Subtypes of idiopathic pulmonary fibrosis. transcription profiling by array Homo sapiens 409 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32539/E-GEOD-32539.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32539/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32539/ E-GEOD-32538 Molecular phenotyping of the idiopathic interstitial pneumonias [miRNA] transcription profiling by array Homo sapiens 192 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32538/E-GEOD-32538.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32538/E-GEOD-32538.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32538/ E-GEOD-32537 Molecular phenotyping of the idiopathic interstitial pneumonias [mRNA] transcription profiling by array Homo sapiens 217 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32537/E-GEOD-32537.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-32537/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-32537/ E-GEOD-30853 Genome-wide analysis of desiccation tolerance-related genes in Arabidopsis seeds transcription profiling by array, transcription profiling by tiling array Arabidopsis thaliana 6 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30853/E-GEOD-30853.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30853/E-GEOD-30853.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30853/ E-GEOD-30147 Expression data from rosiglitazone treated, rosiglitazone withdrawal and untreated control Zucker Diabetic Fatty rats. transcription profiling by array Rattus norvegicus 9 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30147/E-GEOD-30147.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30147/E-GEOD-30147.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30147/ E-GEOD-30141 Spheroid active compound transcription profiling by array Homo sapiens 2 2013-06-21 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30141/E-GEOD-30141.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30141/E-GEOD-30141.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30141/ E-MEXP-3925 Transcription profiling by array of tracheae from Drosophila infected with Erwinia carotovora carotovora Ecc15 transcription profiling by array Drosophila melanogaster 18 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3925/E-MEXP-3925.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3925/E-MEXP-3925.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3925/ E-GEOD-48156 Global transcriptome analysis of orange wheat blossom midge, Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae) to identify candidate transcripts regulating diapause RNA-seq of coding RNA Sitodiplosis mosellana 2 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48156/E-GEOD-48156.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48156/ E-GEOD-48122 REST?Mediated Recruitment of Polycomb Repressor Complexes in Mammalian Cells ChIP-seq Mus musculus 18 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48122/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48122/ E-GEOD-48121 Expression data from human pancreatic cells PANC-1 infected with oncolytic vaccinia virus GLV-1h153 transcription profiling by array Homo sapiens 9 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48121/E-GEOD-48121.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48121/E-GEOD-48121.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48121/ E-GEOD-48092 Profile of Bmpr1a-/- embryonic stem cells in ESC media and N2B27 transcription profiling by array Mus musculus 11 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48092/E-GEOD-48092.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48092/E-GEOD-48092.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48092/ E-GEOD-48089 Protein microarray analysis of antibody responses to Plasmodium falciparum in Western Kenyan highlands proteomic profiling by array Homo sapiens 118 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48089/E-GEOD-48089.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48089/ E-GEOD-48087 The Cellular and Genomic Response of  Dopaminergic Neurons (N27) to Commericial ?Capped? Nanosilver transcription profiling by array Rattus norvegicus 24 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48087/E-GEOD-48087.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48087/ E-GEOD-48077 Gene expression in brain and antennae of starved and fed Drosophilla adult transcription profiling by array Drosophila melanogaster 16 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48077/E-GEOD-48077.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48077/E-GEOD-48077.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48077/ E-GEOD-48076 Eukaryote-Specific Insertion Elements Control Human ARGONAUTE Slicer Activity RNA-seq of non coding RNA Trichoplusia ni 4 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48076/E-GEOD-48076.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48076/ E-GEOD-48048 Gene expression profiling normal murine myeloid cells and myeloid leukemia cells induced by CNTRL-FGFR1 RNA-seq of coding RNA Mus musculus 5 2013-06-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48048/ E-GEOD-47985 Induced Pluripotent Stem Cells From Pancreatic Ductal Adenocarcinoma Can Recapitulate Early Developmental Stages of Cancer comparative genomic hybridization by array Homo sapiens 4 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47985/E-GEOD-47985.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47985/E-GEOD-47985.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47985/ E-GEOD-47976 Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3? UTRs other Homo sapiens 5 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47976/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47976/ E-GEOD-47866 Analysis of miR-203 regulated genes during IFNalpha treatment transcription profiling by array Homo sapiens 12 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47866/E-GEOD-47866.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47866/ E-GEOD-47865 Identification of miR-203 Regulated Genes During Sendai Virus Infection transcription profiling by array Homo sapiens 12 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47865/E-GEOD-47865.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47865/ E-GEOD-47614 Characterization of genome-methylome interactions in 22 nuclear pedigrees methylation profiling by high throughput sequencing Homo sapiens 96 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47614/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47614/ E-GEOD-46851 Community composition of ammonia-oxidizing archaea from surface and anoxic depths of oceanic oxygen minimum zones other marine metagenome, synthetic construct 23 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46851/E-GEOD-46851.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46851/E-GEOD-46851.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46851/ E-GEOD-46144 Expression analysis of Escherichia coli MG1655 K-12 ?hns/?stpA from aerobic and anaerobic growth conditions transcription profiling by tiling array Escherichia coli str. K-12 substr. MG1655 4 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46144/E-GEOD-46144.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46144/E-GEOD-46144.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46144/ E-GEOD-45579 Sox4 is a master regulator of epithelial-mesenchymal transition (EMT) by controlling Ezh2 expression and epigenetic reprogramming ChIP-seq Mus musculus 13 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45579/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45579/ E-GEOD-45207 Growth factor stimulation of cardiomyocytes induces changes in the transcriptional contents of secreted exosomes transcription profiling by array Mus musculus 11 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45207/E-GEOD-45207.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45207/ E-GEOD-44855 Genomic landscape of transcriptional and epigenetic dysregulation in a mouse model of early onset Huntington's disease ChIP-seq, transcription profiling by array Mus musculus 24 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44855/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44855/E-GEOD-44855.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44855/ E-GEOD-44854 Histone deacetylation-dependent and -independent transcriptional dysregulation in early-onset polyglutamine disease ChIP-seq Mus musculus 6 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44854/E-GEOD-44854.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44854/ E-GEOD-44306 Gene expression profile of N171-HD82Q hippocampus and cerebellum. transcription profiling by array Mus musculus 18 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44306/E-GEOD-44306.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44306/E-GEOD-44306.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44306/ E-GEOD-44050 Expression data from Sox4 knockdown cells in the presence and absence of TGF? in NMuMG cells transcription profiling by array Mus musculus 8 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44050/E-GEOD-44050.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44050/E-GEOD-44050.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44050/ E-GEOD-43834 A Stable Transcription Factor Complex Nucleated by Dimeric AML1-ETO Controls Leukaemogenesis ChIP-seq, RNA-seq of coding RNA Homo sapiens 17 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43834/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43834/ E-GEOD-43721 Cellular source and mechanisms of high transcriptome complexity in the mammalian testis (RNA-Seq organs) RNA-seq of coding RNA Mus musculus 3 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43721/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43721/ E-GEOD-43719 Cellular source and mechanisms of high transcriptome complexity in the mammalian testis (RRBS and ChIP-Seq) ChIP-seq, methylation profiling by high throughput sequencing Mus musculus 10 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43719/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43719/ E-GEOD-43717 Cellular source and mechanisms of high transcriptome complexity in the mammalian testis (RNA-Seq cells) RNA-seq of coding RNA Mus musculus 5 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43717/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43717/ E-GEOD-43575 A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure. ChIP-seq, RNA-seq of coding RNA Mus musculus 15 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43575/E-GEOD-43575.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43575/ E-GEOD-43037 Conditional loss of ErbB3 delays mammary gland hyperplasias induced by mutant PIK3CA but does not affect mammary tumor latency, gene expression or signaling transcription profiling by array Mus musculus 12 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43037/E-GEOD-43037.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43037/ E-GEOD-42675 Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli transcription profiling by array Escherichia coli str. K-12 substr. MG1655 6 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42675/E-GEOD-42675.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42675/E-GEOD-42675.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42675/ E-GEOD-42243 High throughput sequencing enables detailed analysis of S. cerevisiae DNA replication other Saccharomyces cerevisiae 4 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42243/E-GEOD-42243.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42243/ E-GEOD-41575 Role of platelet micrornas in sickle cell disease transcription profiling by array Homo sapiens 53 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41575/E-GEOD-41575.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41575/E-GEOD-41575.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41575/ E-GEOD-41574 MicroRNA expression profile of platelets in sickle cell disease transcription profiling by array Homo sapiens 43 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41574/E-GEOD-41574.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41574/E-GEOD-41574.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41574/ E-GEOD-41573 Gene expression data in Meg-01 cells following transfection with platelet-enriched microRNA-1225-3p transcription profiling by array Homo sapiens 10 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41573/E-GEOD-41573.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41573/E-GEOD-41573.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41573/ E-GEOD-41443 Expression data in H1299 after retinoblastoma binding protein-2 (RBP2) knockdown transcription profiling by array Homo sapiens 6 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41443/E-GEOD-41443.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41443/E-GEOD-41443.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41443/ E-GEOD-41195 Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding ChIP-seq, transcription profiling by tiling array, ChIP-chip by tiling array, transcription profiling by array, RNA-seq of coding RNA Escherichia coli str. K-12 substr. MG1655 48 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41195/processed/ http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41195/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41195/ E-GEOD-41190 High-throughput Solexa sequencing of total RNA from Escherichia coli wild type and ?fnr strain (PK4854) RNA-seq of coding RNA Escherichia coli str. K-12 substr. MG1655 4 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41190/E-GEOD-41190.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41190/ E-GEOD-41189 Expression analysis of Escherichia coli MG1655 K-12 WT and ?fnr mutant transcription profiling by array Escherichia coli str. K-12 substr. MG1655 6 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41189/E-GEOD-41189.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41189/E-GEOD-41189.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41189/ E-GEOD-41187 Genome-wide analysis of FNR and ?70 in E. coli under aerobic and anaerobic growth conditions. ChIP-seq Escherichia coli str. K-12 substr. MG1655 9 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41187/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41187/ E-GEOD-41186 Chip-chip from Escherichia coli MG1655 K-12, WT and ?fnr strains ChIP-chip by tiling array Escherichia coli str. K-12 substr. MG1655 25 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41186/E-GEOD-41186.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41186/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41186/ E-GEOD-41065 The APSES Transcription factor Efg1 regulates a novel phenotype switch in Candida parapsilosis. ChIP-seq, RNA-seq of coding RNA Candida parapsilosis 14 2013-06-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41065/ E-GEOD-41064 The APSES Transcription factor Efg1 regulates a novel phenotype switch in Candida parapsilosis [RNA-seq]. RNA-seq of coding RNA Candida parapsilosis 8 2013-06-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41064/ E-GEOD-41063 The APSES Transcription factor Efg1 regulates a novel phenotype switch in Candida parapsilosis [ChIP-seq]. ChIP-seq Candida parapsilosis 6 2013-06-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41063/ E-GEOD-40503 Study of transcriptional content in exosomes derived from untreated and growth factor-treated cultured cardiomyocytes (HL-1) transcription profiling by array Mus musculus 12 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40503/E-GEOD-40503.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40503/ E-GEOD-39668 Human prostate carcinoma cell line 22Rv1 overexpressing ESE1 transcription profiling by array Homo sapiens 2 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39668/E-GEOD-39668.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39668/E-GEOD-39668.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39668/ E-GEOD-39197 Gene expression profiling of NK cells isolated from the pancreas of BDC TCR expressing NOD mice before or after Treg ablation by DTR. Also, NK cells cultured in vitro with activating cytokines IL12 and IL-18 with or without regulatory TGFb. transcription profiling by array Mus musculus 41 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39197/E-GEOD-39197.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39197/E-GEOD-39197.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39197/ E-GEOD-37172 EpCAM overexpression prolongs proliferative capacity of primary human breast epithelial cells and supports hyperplastic growth transcription profiling by array Homo sapiens 6 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37172/E-GEOD-37172.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-37172/E-GEOD-37172.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37172/ E-GEOD-36806 Chronic TNBS Colitis in the FN14 KO Mouse transcription profiling by array Mus musculus 23 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36806/E-GEOD-36806.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36806/E-GEOD-36806.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36806/ E-GEOD-36253 Evolutionary principles of modular gene regulation in Yeasts transcription profiling by array Candida albicans, Candida glabrata, Debaryomyces hansenii, Kluyveromyces lactis, Kluyveromyces polysporus, Lachancea kluyveri, Lachancea waltii, Naumovozyma castellii, S. bayanus uvarum, Saccharomyces bayanus, Saccharomyces cerevisiae, Saccharomyces kluyveri, Saccharomyces mikatae, Saccharomyces paradoxus, Schizosaccharomyces japonicus, Schizosaccharomyces pombe, Vanderwaltozyma polyspora, Yarrowia lipolytica 422 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36253/E-GEOD-36253.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36253/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36253/ E-GEOD-35140 Genome-wide identification of CTCF and Cohesin binding sites in neonatal mouse brain ChIP-seq Mus musculus 8 2013-06-20 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-35140/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35140/ E-ERAD-183 RNA-seq of mice Treg cells differentiation by Foxp3 RNA-seq of coding RNA Mus musculus 16 2013-06-20 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-ERAD-183/ E-MEXP-3610 Transcription profiling by array of Saccharomyces cerevisiae (yeast) to analyse and classify Whi3-regulated and ploidy-regulated genes in haploid and diploid strains of the Sigma1278b genetic background under vegetative growth conditions transcription profiling by array Saccharomyces cerevisiae 6 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3610/E-MEXP-3610.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3610/E-MEXP-3610.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3610/ E-GEOD-48095 Expression change in materal and fetal part of Cxcl14-/- placenta transcription profiling by array Mus musculus 12 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48095/E-GEOD-48095.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48095/E-GEOD-48095.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48095/ E-GEOD-48079 Crosstalk between the STAT3, NF-kB and Notch signaling pathways in glioblastoma stem cells transcription profiling by array Homo sapiens 6 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48079/E-GEOD-48079.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48079/ E-GEOD-48078 Gene expression changes caused by YAP overexpression and Nf2 deletion in the developing mouse brain transcription profiling by array Mus musculus 12 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48078/E-GEOD-48078.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48078/E-GEOD-48078.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48078/ E-GEOD-48072 RNA analysis in Finnish Schizophrenia Families transcription profiling by array Homo sapiens 66 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48072/E-GEOD-48072.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48072/ E-GEOD-48062 Heat and nickel induced mRNA changes in mussels transcription profiling by array Mytilus galloprovincialis 16 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48062/E-GEOD-48062.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48062/E-GEOD-48062.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48062/ E-GEOD-48061 Genome and transcriptome adaptations of S. Typhimurium transcription profiling by array Salmonella enterica subsp. enterica serovar Typhimurium 12 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48061/E-GEOD-48061.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48061/E-GEOD-48061.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48061/ E-GEOD-48057 Effects of Citalopram Exposure on Osteogenesis in Mouse Calvarial Pre-Osteoblasts transcription profiling by array Mus musculus 4 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48057/E-GEOD-48057.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48057/E-GEOD-48057.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48057/ E-GEOD-48054 Developmental exposure to valproic acid alters the expression of microRNAs involved in neurodevelopment in zebrafish transcription profiling by array Danio rerio 16 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48054/E-GEOD-48054.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48054/E-GEOD-48054.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48054/ E-GEOD-48052 DNA methylome and transcriptome analysis of normal and HBx transgenic mouse liver methylation profiling by high throughput sequencing, RNA-seq of coding RNA Mus musculus 4 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48052/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48052/ E-GEOD-48051 Expression signature as a biomarker for prenatal diagnosis of trisomy 21 transcription profiling by array Homo sapiens 19 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48051/E-GEOD-48051.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48051/E-GEOD-48051.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48051/ E-GEOD-47975 Grazing-induced expression of seaweed genes transcription profiling by array Fucus vesiculosus 12 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47975/E-GEOD-47975.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47975/E-GEOD-47975.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47975/ E-GEOD-47897 Crosstalk between the effects of extracellular vesicles (Evs) and TNF on U937 human monocyte cell line transcription profiling by array Homo sapiens 12 2013-06-19 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47897/E-GEOD-47897.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47897/E-GEOD-47897.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47897/ E-GEOD-38838 Cross-presenting CD103+ dendritic cells are protected from influenza virus infection RNA-seq of coding RNA Mus musculus 4 2013-06-19 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38838/ E-MTAB-595 RNA-Seq of mouse bone marrow derived dendritic cells cocultured with Candida albicans at different sample collection time points RNA-seq of coding RNA Candida albicans, Mus musculus 15 2013-06-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-595/ E-GEOD-48046 Gene expression analysis of Early immature and Late mature T-ALL cell lines transcription profiling by array Homo sapiens 20 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48046/E-GEOD-48046.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48046/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48046/ E-GEOD-48042 Transcriptome analysis of the early response to nickel (Ni) in Acidiphilium sp. PM transcription profiling by array Acidiphilium sp. PM 12 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48042/E-GEOD-48042.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48042/E-GEOD-48042.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48042/ E-GEOD-48041 Molecular Basis of Renal Adaptation in a Murine Model of Congenital Obstructive Nephropathy transcription profiling by array Mus musculus 24 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48041/E-GEOD-48041.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48041/E-GEOD-48041.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48041/ E-GEOD-48030 Expression of FUS-CHOP fusion protein in immortalized/transformed human Mesenchymal Stem Cells drives mixoid liposarcoma formation transcription profiling by array Homo sapiens 16 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48030/E-GEOD-48030.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48030/E-GEOD-48030.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48030/ E-GEOD-48029 Expression data of Jurkat cells stably expressing HBZ with or without stimulation transcription profiling by array Homo sapiens 4 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48029/E-GEOD-48029.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48029/E-GEOD-48029.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48029/ E-GEOD-48024 Time series of global gene expression after trivalent influenza vaccination in humans transcription profiling by array Homo sapiens 848 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48024/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48024/ E-GEOD-48023 Time series of global gene expression after trivalent influenza vaccination in humans (female cohort) transcription profiling by array Homo sapiens 417 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48023/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48023/ E-GEOD-48019 Human STAV cells from AB and FCS sublines grown in cell culture or as xenografts comparative genomic hybridization by array Homo sapiens 4 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48019/E-GEOD-48019.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48019/E-GEOD-48019.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48019/ E-GEOD-48018 Time series of global gene expression after trivalent influenza vaccination in humans (male cohort) transcription profiling by array Homo sapiens 431 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48018/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48018/ E-GEOD-48015 Expression data from Avian Pathogenic Escherichia coli transcription profiling by array Escherichia coli O08, Escherichia coli SCI-07 2 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48015/E-GEOD-48015.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48015/E-GEOD-48015.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48015/ E-GEOD-48014 Gene expression in the liver, effect of maternal high-fat diet during or prior to pregnancy transcription profiling by array Mus musculus 10 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48014/E-GEOD-48014.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48014/E-GEOD-48014.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48014/ E-GEOD-48009 Gene expression in IRfl/fl Cre- and IRfl/fl Cre+ mice transcription profiling by array Mus musculus 6 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48009/E-GEOD-48009.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48009/E-GEOD-48009.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48009/ E-GEOD-48008 Novel deregulated miRNAs in renal cell carcinoma transcription profiling by array Homo sapiens 50 2013-06-18 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48008/E-GEOD-48008.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48008/ E-GEOD-48003 RNA-seq of RNase R treated poly(A)-/ribo- RNAs from H9 cells RNA-seq of coding RNA Homo sapiens 1 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48003/E-GEOD-48003.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48003/ E-GEOD-48002 Protein Domain Mimetics as In Vivo Modulators of Hypoxia-Inducible Factor Signaling transcription profiling by array Homo sapiens 12 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48002/E-GEOD-48002.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48002/E-GEOD-48002.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48002/ E-GEOD-47996 human epidermoid carcinoma cell: Control (A431-P cells) vs. highly invasive subline (A431-III cells) transcription profiling by array Homo sapiens 1 2013-06-18 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47996/E-GEOD-47996.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47996/ E-GEOD-47868 Going Wireless: Fe(III) Oxide Reduction without Pili in Geobacter sulfurreducens Strain JS-1 transcription profiling by array Geobacter sulfurreducens KN400 8 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47868/E-GEOD-47868.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47868/E-GEOD-47868.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47868/ E-GEOD-47539 Experimental characterization of the human non-sequence-specific nucleic acid interactome ChIP-seq Homo sapiens 2 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47539/E-GEOD-47539.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47539/ E-GEOD-46970 Gene expression of 4, 5, and 6 days differentiated Flk1+ WT ES cells, and of 6 days differentiated Flk1+ Runx1-/- and Tal-1-/- ES cells transcription profiling by array Mus musculus 15 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46970/E-GEOD-46970.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46970/E-GEOD-46970.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46970/ E-GEOD-44405 Three MYB Transcription Factors Control Pollen Tube Differentiation Required for Sperm Release transcription profiling by array Arabidopsis thaliana 9 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44405/E-GEOD-44405.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-44405/E-GEOD-44405.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44405/ E-GEOD-43087 Condensin Controls Recruitment of RNA Polymerase II to Achieve X-Chromosome Dosage Compensation ChIP-seq, RNA-seq of coding RNA Caenorhabditis elegans 15 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43087/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43087/ E-GEOD-43086 Binding of the C. elegans dosage compensation complex protein DPY-27 ChIP-seq Caenorhabditis elegans 2 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43086/E-GEOD-43086.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43086/ E-GEOD-43085 Development of GRO-cap (GRO-seq followed by 5'-cap enrichment) to map transcription start sites in C. elegans RNA-seq of coding RNA Caenorhabditis elegans 8 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43085/E-GEOD-43085.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43085/ E-GEOD-43084 Using GRO-seq experiments to determine the mechanism of C. elegans dosage compensation's control of transcription RNA-seq of coding RNA Caenorhabditis elegans 5 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43084/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43084/ E-GEOD-42929 Next-generation sequencing of Okazaki fragments extracted from Saccharomyces cerevisiae other Saccharomyces cerevisiae 1 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42929/E-GEOD-42929.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42929/ E-GEOD-42335 Expression data for MALT1-responsive genes transcription profiling by array Homo sapiens 6 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42335/E-GEOD-42335.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42335/E-GEOD-42335.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42335/ E-GEOD-41752 Transcriptional Profiling in Non-Human Primates Infected With Lassa Virus to Understand the Immune Response to Lassa Infection transcription profiling by array Homo sapiens, Macaca fascicularis 30 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41752/E-GEOD-41752.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41752/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41752/ E-GEOD-39722 Next Generation Sequencing Analysis of Saccharopolyspora erytharea transcriptomes RNA-seq of coding RNA Saccharopolyspora erythraea 7 2013-06-18 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39722/ E-GEOD-39151 Global gene expression analysis of the zoonotic parasite Trichinella spiralis revealed novel genes in host parasite interaction RNA-seq of coding RNA Trichinella spiralis 3 2013-06-18 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39151/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39151/ E-MTAB-1067 microRNA profiling of ovary cell tumors and HOSE cells transcription profiling by array Homo sapiens 191 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1067/E-MTAB-1067.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1067/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1067/ E-MEXP-3696 Transcription profiling by array of mouse lungs infected with influenza A virus (A/Scotland/20/74 (H3N2)) and those from uninfected mice transcription profiling by array Mus musculus 2 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3696/E-MEXP-3696.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3696/E-MEXP-3696.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3696/ E-GEOD-48020 Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation ChIP-seq, RNA-seq of coding RNA Mus musculus 7 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-48020/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-48020/ E-GEOD-47998 Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR) transcription profiling by array, RNA-seq of coding RNA Homo sapiens 8 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47998/E-GEOD-47998.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47998/E-GEOD-47998.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47998/ E-GEOD-47997 Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR) [RNA-seq] RNA-seq of coding RNA Homo sapiens 4 2013-06-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47997/ E-GEOD-47873 Gene expression profiles MCF-10A cells overexpressing MBD2 transcription profiling by array Homo sapiens 6 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47873/E-GEOD-47873.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47873/E-GEOD-47873.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47873/ E-GEOD-46579 A blood based 12-miRNA signature of Alzheimer patients RNA-seq of non coding RNA Homo sapiens 70 2013-06-17 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46579/ E-GEOD-46574 bHLH transcription factors facilitating K+ uptake during stomatal opening are repressed by abscisic acid through phosphorylation transcription profiling by array Arabidopsis thaliana 6 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46574/E-GEOD-46574.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46574/E-GEOD-46574.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46574/ E-GEOD-43443 Expression analysis of the gacS mutant of Pseudomonas fluorescens SBW25 transcription profiling by array Pseudomonas fluorescens SBW25 8 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43443/E-GEOD-43443.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43443/E-GEOD-43443.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43443/ E-GEOD-42297 Transcriptome sequencing of Myotis brandtii RNA-seq of coding RNA Myotis brandtii 15 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42297/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42297/ E-GEOD-41850 Longitudinal expression profiling in whole blood of multiple sclerosis patients and controls transcription profiling by array Homo sapiens 815 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41850/E-GEOD-41850.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41850/ E-GEOD-41849 longitudinal expression profiling in whole blood of multiple sclerosis patients and controls [MS vs Ctrl Replication dataset] transcription profiling by array Homo sapiens 102 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41849/E-GEOD-41849.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41849/ E-GEOD-41848 longitudinal expression profiling in whole blood of multiple sclerosis patients and controls [MS vs Ctrl Discovery dataset] transcription profiling by array Homo sapiens 212 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41848/E-GEOD-41848.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41848/ E-GEOD-41847 longitudinal expression profiling in whole blood of multiple sclerosis patients and controls [IFN_replication dataset] transcription profiling by array Homo sapiens 183 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41847/E-GEOD-41847.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41847/ E-GEOD-41846 longitudinal expression profiling in whole blood of multiple sclerosis patients and controls [IFN_discovery dataset] transcription profiling by array Homo sapiens 318 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-41846/E-GEOD-41846.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41846/ E-GEOD-38125 Transcriptomic profiles of zebrafish embryos exposed to silver (nanoparticles, bulk and ions) using HT-SuperSAGE in a Illumina GA2 platform other Danio rerio 8 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38125/E-GEOD-38125.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38125/ E-GEOD-36769 CD4+ TIL in human breast cancer transcription profiling by array Homo sapiens 60 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36769/E-GEOD-36769.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36769/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36769/ E-GEOD-36768 Effect of human breast tumor supernatant on normal CD4+ T cells (Preliminary Experiment) transcription profiling by array Homo sapiens 6 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36768/E-GEOD-36768.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36768/E-GEOD-36768.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36768/ E-GEOD-36767 Gene changes of CD4+ T cells infiltrating human breast cancer in the absence of tumor environment (Confirmation Set 24h) transcription profiling by array Homo sapiens 6 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36767/E-GEOD-36767.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36767/E-GEOD-36767.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36767/ E-GEOD-36766 Effect of human breast tumor supernatant on normal CD4+ T cells (Confirmation Set SN) transcription profiling by array Homo sapiens 14 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36766/E-GEOD-36766.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36766/E-GEOD-36766.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36766/ E-GEOD-36765 Gene expression profiling of CD4+ T cells infiltrating human breast cancer (Discovery Set) transcription profiling by array Homo sapiens 34 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36765/E-GEOD-36765.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36765/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36765/ E-GEOD-28195 Screening Hub Genes Related to the Recovery Phase of Irradiation Injury by Microarray Analysis Combined with Integrated Gene Network transcription profiling by array Mus musculus 5 2013-06-17 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-28195/E-GEOD-28195.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-28195/ E-GEOD-47816 Comparison of stem/progenitor cell number and transcriptomic profile in mammary tissue of dairy and beef breed heifers transcription profiling by array Bos taurus 4 2013-06-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47816/E-GEOD-47816.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47816/E-GEOD-47816.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47816/ E-GEOD-47763 STAT3 expression, activity and functional consequences of STAT3 inhibition in esophageal squamous cell carcinomas and Barrett?s adenocarcinomas transcription profiling by array Homo sapiens 12 2013-06-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47763/E-GEOD-47763.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47763/ E-GEOD-46901 Microarray-based gene expression profiling of peripheral blood mononuclear cells in dairy cows with experimental hypocalcaemia and milk fever transcription profiling by array Bos taurus 37 2013-06-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46901/E-GEOD-46901.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46901/E-GEOD-46901.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46901/ E-GEOD-23429 Mycobacteria-Dependent Expression of microRNA-142-3p Reduces WASP Family Proteins and Controls Phagocytosis transcription profiling by array Mus musculus 6 2013-06-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23429/E-GEOD-23429.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-23429/E-GEOD-23429.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23429/ E-GEOD-22599 ChIP-chip from HEK293 cells with YY2-antibody ChIP-chip by tiling array Homo sapiens 1 2013-06-16 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22599/E-GEOD-22599.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22599/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22599/ E-MTAB-1670 Transcription profiling by array of granulosa and cumulus cells following ovulation induction with either hCG or a GnRH agonist trigger to explore differences in follicle transcriptomes in patients transcription profiling by array Homo sapiens 35 2013-06-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1670/E-MTAB-1670.raw.1.zip Yes http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1670/ E-MTAB-1488 Transcription profiling by array of mouse HET and WT irradiated hearts to investigate how Endoglin haplo-insufficient modifies the inflammatory response transcription profiling by array Mus musculus 12 2013-06-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-1488/E-MTAB-1488.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1488/ E-MTAB-974 Transcriptional profiling by high throughput sequencing of Panax ginseng root during the leaf-expansion period for de novo gene expression analysis RNA-seq of coding RNA Panax ginseng 1 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-974/ E-MEXP-3779 Transcription profiling by array of Candida albicans homozygous sfl1 and sfl2 mutants with inducible expression of SFL1-HA3 and SFL2-HA3 respectively in comparison to uninduced controls under hyphae-inducing conditions transcription profiling by array Candida albicans 6 2013-06-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3779/E-MEXP-3779.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3779/ E-GEOD-47982 Early transcriptional changes in Zea mays seedlings exposed to Z-3-hexenol transcription profiling by array Zea mays 6 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47982/E-GEOD-47982.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47982/E-GEOD-47982.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47982/ E-GEOD-47978 EWI-2 regulates melanoma growth and lung metastasis in a TGF-?1-dependent manner transcription profiling by array Homo sapiens 4 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47978/E-GEOD-47978.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47978/E-GEOD-47978.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47978/ E-GEOD-47968 Effect of myotonic dystrophy on pre-mRNA alternative splicing in skeletal muscle transcription profiling by array Homo sapiens 31 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47968/E-GEOD-47968.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47968/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47968/ E-GEOD-47964 Activation of the aryl hydrocarbon receptor by dioxin during embryonic stem cell differentiation disrupts the expression of homeobox transcription factors that control cardiomyogenesis RNA-seq of coding RNA Mus musculus 24 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47964/ E-GEOD-47953 Expression data from embryonic mouse cervical spinal cords transcription profiling by array Mus musculus 6 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47953/E-GEOD-47953.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47953/E-GEOD-47953.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47953/ E-GEOD-47952 Transient knockdown of LIS1 results in seizures, differential gene expression and a neuronal migration disorder in developing zebrafish transcription profiling by array Danio rerio 8 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47952/E-GEOD-47952.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47952/E-GEOD-47952.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47952/ E-GEOD-47950 Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage ChIP-seq, RNA-seq of coding RNA Mus musculus 62 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47950/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47950/ E-GEOD-47949 ChIP-seq analysis of histone modifications and RNA polymerase II at 4 stages of directed cardiac differentiation of mouse embryonic stem cells ChIP-seq Mus musculus 54 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47949/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47949/ E-GEOD-47948 RNA-seq analysis of global RNA levels at 4 stages of directed cardiac differentiation of mouse embryonic stem cells RNA-seq of coding RNA Mus musculus 8 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47948/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47948/ E-GEOD-47947 Whole genome McrBC-chip on DNA methylation of diatom Phaeodactylum tricornutum methylation profiling by array Phaeodactylum tricornutum 3 2013-06-15 Data is not available http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47947/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47947/ E-GEOD-47945 Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR) [expression] transcription profiling by array Homo sapiens 4 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47945/E-GEOD-47945.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47945/E-GEOD-47945.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47945/ E-GEOD-47399 mRNA sequencing identifies differential gene expresssion profiles between ASCC3 knock-down cells and control cells RNA-seq of coding RNA Homo sapiens 6 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47399/E-GEOD-47399.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47399/ E-GEOD-47217 The Obesity-associated Fto gene regulates activity of the dopaminergic midbrain circuitry other, methylation profiling by high throughput sequencing Mus musculus 12 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47217/ E-GEOD-47216 The Obesity-associated Fto gene regulates activity of the dopaminergic midbrain circuitry [FTO KO] other, methylation profiling by high throughput sequencing Mus musculus 6 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47216/ E-GEOD-47215 The Obesity-associated Fto gene regulates activity of the dopaminergic midbrain circuitry [WT] other, methylation profiling by high throughput sequencing Mus musculus 6 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47215/ E-GEOD-46957 TAL1 regulated miRNAs transcription profiling by array Homo sapiens 8 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46957/E-GEOD-46957.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46957/E-GEOD-46957.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46957/ E-GEOD-45337 Genome-wide methylation and expression analysis of two breast cancer cell lines methylation profiling by high throughput sequencing, RNA-seq of coding RNA Homo sapiens 4 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45337/E-GEOD-45337.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45337/ E-GEOD-45336 Genome-wide methylation and expression analysis of two breast cancer cell lines [Methyl-MAPS] methylation profiling by high throughput sequencing Homo sapiens 2 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-45336/E-GEOD-45336.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45336/ E-GEOD-45335 Genome-wide methylation and expression analysis of two breast cancer cell lines [RNA-Seq] RNA-seq of coding RNA Homo sapiens 2 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45335/ E-GEOD-44333 Analysis of the host transcriptome from demyelinating spinal cord of murine coronavirus infected mice RNA-seq of coding RNA Mus musculus 2 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44333/ E-GEOD-43919 Predicting and manipulating drug inactivation by the human gut microbiome RNA-seq of coding RNA Eggerthella lenta DSM 2243 22 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-43919/E-GEOD-43919.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43919/ E-GEOD-42886 ChIP-Seq analysis of Candida albicans Sfl1p and Sfl2p ChIP-seq Candida albicans 8 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42886/E-GEOD-42886.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42886/ E-GEOD-42629 Density and methylation state of CpG dinucleotides define histone variant specific retention of nucleosomes in mouse spermatozoa ChIP-seq, methylation profiling by high throughput sequencing, RNA-seq of coding RNA Mus musculus 21 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42629/processed/ Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42629/ E-GEOD-42599 Virulence effects and signaling partners modulated by Brucella melitensis light-sensing histidine kinase transcription profiling by array Brucella melitensis bv. 1 str. 16M 6 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42599/E-GEOD-42599.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-42599/E-GEOD-42599.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42599/ E-GEOD-40886 The genomic landscape of the somatic linker histone subtypes H1.1 to H1.5 in human cells ChIP-chip by tiling array Homo sapiens 5 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40886/E-GEOD-40886.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40886/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40886/ E-GEOD-40413 IL-17 and TNF synergistically induce growth-associated cytokines in melanocytes while suppressing melanogenesis transcription profiling by array Homo sapiens 12 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40413/E-GEOD-40413.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40413/E-GEOD-40413.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40413/ E-GEOD-40202 Transcriptomic profiling of Aspergillus flavus in response to 5-azacytidine & gallic acid RNA-seq of coding RNA Aspergillus flavus 3 2013-06-15 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40202/ E-GEOD-40055 Non-CpG island promoter hypomethylation and miR-149 regulate the expression of SRPX2 in colorectal cancer methylation profiling by array Homo sapiens 42 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-40055/E-GEOD-40055.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40055/ E-GEOD-39919 Transcriptional profiling of gastric epithelial cells infected with wild type or arginase-deficient Helicobacter pylori transcription profiling by array Homo sapiens 20 2013-06-15 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-39919/E-GEOD-39919.processed.1.zip Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39919/ E-MEXP-3893 Transcriptional profiling by array of multiciliated cells isolated from embryonic zebrafish kidney with and without knockdown of MiR-34b to study multiciliogenesis during organ formation transcription profiling by array Danio rerio 4 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3893/E-MEXP-3893.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-MEXP-3893/E-MEXP-3893.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3893/ E-GEOD-47941 Adipose tissue nutrigenomic study in Iberian pigs with dietary intervention of oleic acid supplementation transcription profiling by array Sus scrofa 15 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47941/E-GEOD-47941.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47941/E-GEOD-47941.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47941/ E-GEOD-47939 MicroRNAs Expression Profiles and the target genes in Chinese Non-syndromic isolated Cleft Palate Patients transcription profiling by array Homo sapiens 16 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47939/E-GEOD-47939.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47939/E-GEOD-47939.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47939/ E-GEOD-47926 In vivo development, differentiation and function of brown fat proceeds in the absence of miRNAs 193b and 365-1 RNA-seq of coding RNA, RNA-seq of non coding RNA Mus musculus 8 2013-06-14 Data is not available Data is not available http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47926/ E-GEOD-47913 Integrated array CGH and expression profiling revealed candidate biomarkers in gastrointestinal stromal turmor transcription profiling by array, comparative genomic hybridization by array Homo sapiens 48 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47913/E-GEOD-47913.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47913/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47913/ E-GEOD-47912 Array CGH analysis in gastric gastrointestinal stromal tumors (GISTs) comparative genomic hybridization by array Homo sapiens 32 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47912/E-GEOD-47912.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47912/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47912/ E-GEOD-47911 Gene expression signatures in gastric gastrointestinal stromal tumors (GISTs) transcription profiling by array Homo sapiens 16 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47911/E-GEOD-47911.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47911/E-GEOD-47911.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47911/ E-GEOD-47909 mRNA expression of Qa2+ and Qa2- CD4+ thymocytes isolated from WT and miR-142-/- mice transcription profiling by array Mus musculus 4 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47909/E-GEOD-47909.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47909/E-GEOD-47909.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47909/ E-GEOD-47903 Expression data of E16 GFAP-tTA: TetO-VEGF-A164 bitransgenic embryos compared to wild type transcription profiling by array Mus musculus 8 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47903/E-GEOD-47903.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47903/E-GEOD-47903.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47903/ E-GEOD-47832 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen transcription profiling by array, ChIP-chip by tiling array Ajellomyces capsulatus 108 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47832/E-GEOD-47832.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47832/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47832/ E-GEOD-47341 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- ChIP-chip ChIP-chip by tiling array Ajellomyces capsulatus 20 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47341/E-GEOD-47341.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-47341/raw/ http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-47341/ E-GEOD-46939 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- RNAi mutants (2) transcription profiling by array Ajellomyces capsulatus 18 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46939/E-GEOD-46939.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46939/E-GEOD-46939.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46939/ E-GEOD-46938 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- RNAi mutants (1) transcription profiling by array Ajellomyces capsulatus 36 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46938/E-GEOD-46938.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46938/E-GEOD-46938.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46938/ E-GEOD-46937 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- T-DNA mutants (2) transcription profiling by array Ajellomyces capsulatus 18 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46937/E-GEOD-46937.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46937/E-GEOD-46937.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-46937/ E-GEOD-46936 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- T-DNA mutants (1) transcription profiling by array Ajellomyces capsulatus 16 2013-06-14 http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46936/E-GEOD-46936.processed.1.zip http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-46936/E-GEOD-46936.raw.1.zip http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD