Weizhong Li

Weizhong Li

Software Engineer - Web production

ORCID iD: 0000-0002-9003-7733

Tel:+ 44 (0) 1223 492 517 / Fax:+ 44 (0) 1223 492 468

Publications

2015

UniProt: a hub for protein information.
UniProt Consortium.
Nucleic Acids Res Volume 43 (2015) p.d204-12
DOI: 10.1093/nar/gku989

The EMBL-EBI bioinformatics web and programmatic tools framework.
Li W, Cowley A, Uludag M, Gur T, McWilliam H, Squizzato S, Park YM, Buso N, Lopez R.
Nucleic Acids Res Volume 43 (2015) p.w580-4
DOI: 10.1093/nar/gkv279

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.
Squizzato S, Park YM, Buso N, Gur T, Cowley A, Li W, Uludag M, Pundir S, Cham JA, McWilliam H, Lopez R.
Nucleic Acids Res Volume 43 (2015) p.w585-8
DOI: 10.1093/nar/gkv316

Content discovery and retrieval services at the European Nucleotide Archive.
Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, Plaister S, Radhakrishnan R, Rossello M, Senf A, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic Acids Res Volume 43 (2015) p.d23-9
DOI: 10.1093/nar/gku1129

2014

Assembly information services in the European Nucleotide Archive.
Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic Acids Res Volume 42 (2014) p.d38-43
DOI: 10.1093/nar/gkt1082

InterProScan 5: genome-scale protein function classification.
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S.
Bioinformatics Volume 30 (2014) p.1236-1240
DOI: 10.1093/bioinformatics/btu031

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.
Lopez R, Cowley A, Li W, McWilliam H.
Curr Protoc Bioinformatics Volume 48 (2014) p.3.12.1-3.12.50
DOI: 10.1002/0471250953.bi0312s48

2013

The annotation-enriched non-redundant patent sequence databases.
Li W, Kondratowicz B, McWilliam H, Nauche S, Lopez R.
Database (Oxford) Volume 2013 (2013) p.bat005
DOI: 10.1093/database/bat005

Analysis Tool Web Services from the EMBL-EBI.
McWilliam H, Li W, Uludag M, Squizzato S, Park YM, Buso N, Cowley AP, Lopez R.
Nucleic Acids Res Volume 41 (2013) p.w597-600
DOI: 10.1093/nar/gkt376

2012

PSI-Search: iterative HOE-reduced profile SSEARCH searching.
Li W, McWilliam H, Goujon M, Cowley A, Lopez R, Pearson WR.
Bioinformatics Volume 28 (2012) p.1650-1651
DOI: 10.1093/bioinformatics/bts240

2011

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG.
Mol Syst Biol Volume 7 (2011) p.539
DOI: 10.1038/msb.2011.75

2010

A new bioinformatics analysis tools framework at EMBL-EBI.
Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R.
Nucleic Acids Res Volume 38 (2010) p.w695-9
DOI: 10.1093/nar/gkq313

Non-redundant patent sequence databases with value-added annotations at two levels.
Li W, McWilliam H, de la Torre AR, Grodowski A, Benediktovich I, Goujon M, Nauche S, Lopez R.
Nucleic Acids Res Volume 38 (2010) p.d52-6
DOI: 10.1093/nar/gkp960

2009

Web services at the European Bioinformatics Institute-2009.
McWilliam H, Valentin F, Goujon M, Li W, Narayanasamy M, Martin J, Miyar T, Lopez R.
Nucleic Acids Res Volume 37 (2009) p.w6-10
DOI: 10.1093/nar/gkp302

ExprAlign--the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles.
Li W, Gracey AY, Mello LV, Brass A, Cossins AR.
BMC Genomics Volume 10 (2009) p.560
DOI: 10.1186/1471-2164-10-560

Application of ESTs in microarray analysis.
Li W, Olohan L, Williams D, Hughes M, Gracey A, Cossins A.
Methods Mol Biol Volume 533 (2009) p.289-309
DOI: 10.1007/978-1-60327-136-3_14

2007

Cutaneous immune responses in the common carp detected using transcript analysis.
Gonzalez SF, Chatziandreou N, Nielsen ME, Li W, Rogers J, Taylor R, Santos Y, Cossins A.
Mol Immunol Volume 44 (2007) p.1664-1679
DOI: 10.1016/j.molimm.2006.08.016

2005

Seasonally hibernating phenotype assessed through transcript screening.
Williams DR, Epperson LE, Li W, Hughes MA, Taylor R, Rogers J, Martin SL, Cossins AR, Gracey AY.
Physiol Genomics Volume 24 (2005) p.13-22
DOI: 10.1152/physiolgenomics.00301.2004

2004

Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate.
Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR.
Proc Natl Acad Sci U S A Volume 101 (2004) p.16970-16975
DOI: 10.1073/pnas.0403627101