Vijayalakshmi Chelliah

Vijayalakshmi Chelliah

BioModels Project Leader - Hermjakob team

ORCID iD: 0000-0002-2618-283X

Tel:+ 44 (0) 1223 494 418 / Fax:+ 44 (0) 1223 48 46 96

Publications

2015

BioModels: Content, Features, Functionality, and Use.
Juty N, Ali R, Glont M, Keating S, Rodriguez N, Swat MJ, Wimalaratne SM, Hermjakob H, Le Novère N, Laibe C, Chelliah V.
CPT: pharmacometrics & systems pharmacology Volume 4 (2015) p.e3

BioModels: ten-year anniversary.
Chelliah V, Juty N, Ajmera I, Ali R, Dumousseau M, Glont M, Hucka M, Jalowicki G, Keating S, Knight-Schrijver V, Lloret-Villas A, Natarajan KN, Pettit JB, Rodriguez N, Schubert M, Wimalaratne SM, Zhao Y, Hermjakob H, Le Novère N, Laibe C.
Nucleic acids research Volume 43 (2015) p.D542-8

2013

The impact of mathematical modeling on the understanding of diabetes and related complications.
Ajmera I, Swat M, Laibe C, Le Novère N, Chelliah V.
CPT: pharmacometrics & systems pharmacology Volume 2 (2013) p.e54

BioModels Database: a repository of mathematical models of biological processes.
Chelliah V, Laibe C, Le Novère N.
Methods in molecular biology (Clifton, N.J.) Volume 1021 (2013) p.189-199

2011

Minimum Information About a Simulation Experiment (MIASE).
Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, Laibe C, Miller AK, Moraru I, Nickerson D, Nielsen P, Nikolski M, Sahle S, Sauro HM, Schmidt H, Snoep JL, Tolle D, Wolkenhauer O, Le Novère N.
PLoS computational biology Volume 7 (2011) p.e1001122

2010

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C.
BMC systems biology Volume 4 (2010) p.92

2009

Designing and encoding models for synthetic biology.
Endler L, Rodriguez N, Juty N, Chelliah V, Laibe C, Li C, Le Novère N.
Journal of the Royal Society, Interface / the Royal Society Volume 6 Suppl 4 (2009) p.S405-17

Probing the "dark matter" of protein fold space.
Taylor WR, Chelliah V, Hollup SM, MacDonald JT, Jonassen I.
Structure (London, England : 1993) Volume 17 (2009) p.1244-1252

2008

Functional site prediction selects correct protein models.
Chelliah V, Taylor WR.
BMC bioinformatics Volume 9 Suppl 1 (2008) p.S13

Prediction of protein structure from ideal forms.
Taylor WR, Bartlett GJ, Chelliah V, Klose D, Lin K, Sheldon T, Jonassen I.
Proteins Volume 70 (2008) p.1610-1619

2006

Structural biology and bioinformatics in drug design: opportunities and challenges for target identification and lead discovery.
Blundell TL, Sibanda BL, Montalvão RW, Brewerton S, Chelliah V, Worth CL, Harmer NJ, Davies O, Burke D.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences Volume 361 (2006) p.413-423

Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment.
Chelliah V, Blundell TL, Fernández-Recio J.
Journal of molecular biology Volume 357 (2006) p.1669-1682

2005

Quantifying structural and functional restraints on amino acid substitutions in evolution of proteins.
Chelliah V, Blundell TL.
Biochemistry. Biokhimiia Volume 70 (2005) p.835-840

Functional restraints on the patterns of amino acid substitutions: application to sequence-structure homology recognition.
Chelliah V, Blundell T, Mizuguchi K.
Proteins Volume 61 (2005) p.722-731

2004

Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
Chelliah V, Chen L, Blundell TL, Lovell SC.
Journal of molecular biology Volume 342 (2004) p.1487-1504

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