Susanna Repo

Susanna Repo

ELIXIR Grants and Project Manager - ELIXIR directorate

ORCID iD: 0000-0003-3488-4767

Tel:+ 44 0) 1223 494 133 / Fax:+ 44 (0) 1223 494 468

Publications

2013

Association of gut microbiota with post-operative clinical course in Crohn's disease.
Dey N, Soergel DA, Repo S, Brenner SE.
BMC Gastroenterol Volume 13 (2013) p.131
DOI: 10.1186/1471-230x-13-131

A large-scale evaluation of computational protein function prediction.
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.
Nat Methods Volume 10 (2013) p.221-227
DOI: 10.1038/nmeth.2340

2009

Somatic mutations of ErbB4: selective loss-of-function phenotype affecting signal transduction pathways in cancer.
Tvorogov D, Sundvall M, Kurppa K, Hollmén M, Repo S, Johnson MS, Elenius K.
J Biol Chem Volume 284 (2009) p.5582-5591
DOI: 10.1074/jbc.m805438200

Phylogenetic molecular function annotation.
Engelhardt BE, Jordan MI, Repo ST, Brenner SE.
J Phys Conf Ser Volume 180 (2009) p.12024
DOI: 10.1088/1742-6596/180/1/012024

2008

Ligand specificity of constitutive androstane receptor as probed by induced-fit docking and mutagenesis.
Repo S, Jyrkkärinne J, Pulkkinen JT, Laatikainen R, Honkakoski P, Johnson MS.
J Med Chem Volume 51 (2008) p.7119-7131
DOI: 10.1021/jm800337r

2007

Functional classification of amino acid decarboxylases from the alanine racemase structural family by phylogenetic studies.
Kidron H, Repo S, Johnson MS, Salminen TA.
Mol Biol Evol Volume 24 (2007) p.79-89
DOI: 10.1093/molbev/msl133

2006

Binding properties of HABA-type azo derivatives to avidin and avidin-related protein 4.
Repo S, Paldanius TA, Hytönen VP, Nyholm TK, Halling KK, Huuskonen J, Pentikäinen OT, Rissanen K, Slotte JP, Airenne TT, Salminen TA, Kulomaa MS, Johnson MS.
Chem Biol Volume 13 (2006) p.1029-1039
DOI: 10.1016/j.chembiol.2006.08.006

2004

Construction of hevein (Hev b 6.02) with reduced allergenicity for immunotherapy of latex allergy by comutation of six amino acid residues on the conformational IgE epitopes.
Karisola P, Mikkola J, Kalkkinen N, Airenne KJ, Laitinen OH, Repo S, Pentikäinen OT, Reunala T, Turjanmaa K, Johnson MS, Palosuo T, Kulomaa MS, Alenius H.
J Immunol Volume 172 (2004) p.2621-2628
DOI: 10.4049/jimmunol.172.4.2621

BODIL: a molecular modeling environment for structure-function analysis and drug design.
Lehtonen JV, Still DJ, Rantanen VV, Ekholm J, Björklund D, Iftikhar Z, Huhtala M, Repo S, Jussila A, Jaakkola J, Pentikäinen O, Nyrönen T, Salminen T, Gyllenberg M, Johnson MS.
J Comput Aided Mol Des Volume 18 (2004) p.401-419
DOI: 10.1007/s10822-004-3752-4

2002

The major conformational IgE-binding epitopes of hevein (Hev b6.02) are identified by a novel chimera-based allergen epitope mapping strategy.
Karisola P, Alenius H, Mikkola J, Kalkkinen N, Helin J, Pentikäinen OT, Repo S, Reunala T, Turjanmaa K, Johnson MS, Palosuo T, Kulomaa MS.
J Biol Chem Volume 277 (2002) p.22656-22661
DOI: 10.1074/jbc.m201076200