Jon Ison

Jon Ison

Bioinformatics software and ontology developer

ORCID iD: 0000-0001-6666-1520

Tel:+44 (0)1223 494 636 / Fax:+44 (0)1223 494 468

Publications

2013

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.
Ison J, Kalas M, Jonassen I, Bolser D, Uludag M, McWilliam H, Malone J, Lopez R, Pettifer S, Rice P.
Bioinformatics Volume 29 (2013) p.1325-1332
DOI: 10.1093/bioinformatics/btt113

ArrayExpress update--trends in database growth and links to data analysis tools.
Rustici G, Kolesnikov N, Brandizi M, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Ison J, Keays M, Kurbatova N, Malone J, Mani R, Mupo A, Pedro Pereira R, Pilicheva E, Rung J, Sharma A, Tang YA, Ternent T, Tikhonov A, Welter D, Williams E, Brazma A, Parkinson H, Sarkans U.
Nucleic Acids Res Volume 41 (2013) p.d987-90
DOI: 10.1093/nar/gks1174

2010

BioXSD: the common data-exchange format for everyday bioinformatics web services.
Kalas M, Puntervoll P, Joseph A, Bartaseviciūte E, Töpfer A, Venkataraman P, Pettifer S, Bryne JC, Ison J, Blanchet C, Rapacki K, Jonassen I.
Bioinformatics Volume 26 (2010) p.i540-6
DOI: 10.1093/bioinformatics/btq391

The EMBRACE web service collection.
Pettifer S, Ison J, Kalas M, Thorne D, McDermott P, Jonassen I, Liaquat A, Fernández JM, Rodriguez JM, INB-Partners, Pisano DG, Blanchet C, Uludag M, Rice P, Bartaseviciute E, Rapacki K, Hekkelman M, Sand O, Stockinger H, Clegg AB, Bongcam-Rudloff E, Salzemann J, Breton V, Attwood TK, Cameron G, Vriend G.
Nucleic Acids Res Volume 38 (2010) p.w683-8
DOI: 10.1093/nar/gkq297

2005

Automatic generation and evaluation of sparse protein signatures for families of protein structural domains.
Blades MJ, Ison JC, Ranasinghe R, Findlay JB.
Protein Sci Volume 14 (2005) p.13-23
DOI: 10.1110/ps.04929005

ROCPLOT: a generic software tool for ROC analysis and the validation of predictive methods.
Ison JC, Blades MJ.
Appl Bioinformatics Volume 4 (2005) p.131-135
DOI: 10.2165/00822942-200504020-00006

Survey of the geometric association of domain-domain interfaces.
Kim WK, Ison JC.
Proteins Volume 61 (2005) p.1075-1088
DOI: 10.1002/prot.20693

2000

The bioinformatics resource
Ison JC, O'Leary SB, Bleasby AJ, Moss D.
Trends Biochem Sci Volume 25 (2000) p.299
DOI: 10.1016/s0968-0004(00)01586-3

Information resources for the bioinformatician.
Ison JC, O'Leary SB, Bleasby AJ, Moss D.
Brief Bioinform Volume 1 (2000) p.229-235
DOI: 10.1093/bib/1.3.229

Key residues approach to the definition of protein families and analysis of sparse family signatures.
Ison JC, Blades MJ, Bleasby AJ, Daniel SC, Parish JH, Findlay JB.
Proteins Volume 40 (2000) p.330-341
DOI: 10.1002/(sici)1097-0134(20000801)40:2<330::aid-prot120>3.3.co;2-v

Exploring protein domain structure.
Ison JC.
Brief Bioinform Volume 1 (2000) p.305-312
DOI: 10.1093/bib/1.3.305

1999

Alignment of a sparse protein signature with protein sequences: application to fold prediction for three small globulins.
Daniel SC, Parish JH, Ison JC, Blades MJ, Findlay JB.
FEBS Lett Volume 459 (1999) p.349-352
DOI: 10.1016/s0014-5793(99)01238-7

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