Jenny Cham

Jenny Cham

User Experience Analyst, User Experience Analyst - Web development

ORCID iD: 0000-0002-7446-222X

Tel:+ 44 (0) 1223 494 465 / Fax:+ 44 (0) 1223 492 621

Publications

2013

The EBI enzyme portal.
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C.
Nucleic Acids Res Volume 41 (2013) p.d773-80
DOI: 10.1093/nar/gks1112

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.
de Matos P, Cham JA, Cao H, Alcántara R, Rowland F, Lopez R, Steinbeck C.
BMC Bioinformatics Volume 14 (2013) p.103
DOI: 10.1186/1471-2105-14-103

2012

Bioinformatics meets user-centred design: a perspective.
Pavelin K, Cham JA, de Matos P, Brooksbank C, Cameron G, Steinbeck C.
PLoS Comput Biol Volume 8 (2012) p.e1002554
DOI: 10.1371/journal.pcbi.1002554

2010

MRMaid-DB: a repository of published SRM transitions.
Cham JA, Bianco L, Barton C, Bessant C.
J Proteome Res Volume 9 (2010) p.620-625
DOI: 10.1021/pr900713u

Mining proteomic MS/MS data for MRM transitions.
Chem Mead JA, Bianco L, Bessant C.
Methods Mol Biol Volume 604 (2010) p.187-199
DOI: 10.1007/978-1-60761-444-9_13

Free computational resources for designing selected reaction monitoring transitions.
Cham Mead JA, Bianco L, Bessant C.
Proteomics Volume 10 (2010) p.1106-1126
DOI: 10.1002/pmic.200900396

2009

Comparison of novel decoy database designs for optimizing protein identification searches using ABRF sPRG2006 standard MS/MS data sets.
Blanco L, Mead JA, Bessant C.
J Proteome Res Volume 8 (2009) p.1782-1791
DOI: 10.1021/pr800792z

Recent developments in public proteomic MS repositories and pipelines.
Mead JA, Bianco L, Bessant C.
Proteomics Volume 9 (2009) p.861-881
DOI: 10.1002/pmic.200800553

MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions.
Mead JA, Bianco L, Ottone V, Barton C, Kay RG, Lilley KS, Bond NJ, Bessant C.
Mol Cell Proteomics Volume 8 (2009) p.696-705
DOI: 10.1074/mcp.m800192-mcp200

2007

Public proteomic MS repositories and pipelines: available tools and biological applications.
Mead JA, Shadforth IP, Bessant C.
Proteomics Volume 7 (2007) p.2769-2786
DOI: 10.1002/pmic.200700152

2006

Evaluation of a genomics platform for cross-species transcriptome analysis of recombinant CHO cells.
Ernst W, Trummer E, Mead J, Bessant C, Strelec H, Katinger H, Hesse F.
Biotechnol J Volume 1 (2006) p.639-650
DOI: 10.1002/biot.200600010