Jenny Cham

Jenny Cham

Lead User Experience Analyst - Web development

ORCID iD: 0000-0002-7446-222X

Tel:+ 44 (0) 1223 494 465 / Fax:+ 44 (0) 1223 492 621

Publications

2015

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.
Squizzato S, Park YM, Buso N, Gur T, Cowley A, Li W, Uludag M, Pundir S, Cham JA, McWilliam H, Lopez R.
Nucleic acids research Volume 43 (2015) p.W585-8

2014

Ten simple rules for running interactive workshops.
Pavelin K, Pundir S, Cham JA.
PLoS computational biology Volume 10 (2014) p.e1003485

2013

The EBI enzyme portal.
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C.
Nucleic acids research Volume 41 (2013) p.D773-80

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.
de Matos P, Cham JA, Cao H, Alcántara R, Rowland F, Lopez R, Steinbeck C.
BMC bioinformatics Volume 14 (2013) p.103

2012

Bioinformatics meets user-centred design: a perspective.
Pavelin K, Cham JA, de Matos P, Brooksbank C, Cameron G, Steinbeck C.
PLoS computational biology Volume 8 (2012) p.e1002554

2010

Mining proteomic MS/MS data for MRM transitions.
Chem Mead JA, Bianco L, Bessant C.
Methods in molecular biology (Clifton, N.J.) Volume 604 (2010) p.187-199

MRMaid-DB: a repository of published SRM transitions.
Cham JA, Bianco L, Barton C, Bessant C.
Journal of proteome research Volume 9 (2010) p.620-625

Free computational resources for designing selected reaction monitoring transitions.
Cham Mead JA, Bianco L, Bessant C.
Proteomics Volume 10 (2010) p.1106-1126

2009

MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions.
Mead JA, Bianco L, Ottone V, Barton C, Kay RG, Lilley KS, Bond NJ, Bessant C.
Molecular & cellular proteomics : MCP Volume 8 (2009) p.696-705

Comparison of novel decoy database designs for optimizing protein identification searches using ABRF sPRG2006 standard MS/MS data sets.
Blanco L, Mead JA, Bessant C.
Journal of proteome research Volume 8 (2009) p.1782-1791

Recent developments in public proteomic MS repositories and pipelines.
Mead JA, Bianco L, Bessant C.
Proteomics Volume 9 (2009) p.861-881

2007

Public proteomic MS repositories and pipelines: available tools and biological applications.
Mead JA, Shadforth IP, Bessant C.
Proteomics Volume 7 (2007) p.2769-2786

2006

Evaluation of a genomics platform for cross-species transcriptome analysis of recombinant CHO cells.
Ernst W, Trummer E, Mead J, Bessant C, Strelec H, Katinger H, Hesse F.
Biotechnology journal Volume 1 (2006) p.639-650