Anton Petrov

Anton Petrov

Bioinformatician/Web developer - Kersey team: Non-vertebrate genomics

ORCID iD: 0000-0001-7279-2682

Tel:+ 44 (0) 1223 492 550 / Fax:+ 44 (0) 1223 494 468

Publications

2014

The Nucleic Acid Database: new features and capabilities.
Coimbatore Narayanan B, Westbrook J, Ghosh S, Petrov AI, Sweeney B, Zirbel CL, Leontis NB, Berman HM.
Nucleic Acids Res Volume 42 (2014) p.d114-22
DOI: 10.1093/nar/gkt980

2013

Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
Petrov AI, Zirbel CL, Leontis NB.
RNA Volume 19 (2013) p.1327-1340
DOI: 10.1261/rna.039438.113

R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
Rahrig RR, Petrov AI, Leontis NB, Zirbel CL.
Nucleic Acids Res Volume 41 (2013) p.w15-21
DOI: 10.1093/nar/gkt417

2012

Comprehensive survey and geometric classification of base triples in RNA structures.
Abu Almakarem AS, Petrov AI, Stombaugh J, Zirbel CL, Leontis NB.
Nucleic Acids Res Volume 40 (2012) p.1407-1423
DOI: 10.1093/nar/gkr810

2011

WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Petrov AI, Zirbel CL, Leontis NB.
Nucleic Acids Res Volume 39 (2011) p.w50-5
DOI: 10.1093/nar/gkr249

A three-dimensional RNA motif in Potato spindle tuber viroid mediates trafficking from palisade mesophyll to spongy mesophyll in Nicotiana benthamiana.
Takeda R, Petrov AI, Leontis NB, Ding B.
Plant Cell Volume 23 (2011) p.258-272
DOI: 10.1105/tpc.110.081414

2010

Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?
Šponer J, Šponer JE, Petrov AI, Leontis NB.
J Phys Chem B Volume 114 (2010) p.15723-15741
DOI: 10.1021/jp104361m