Anton Enright

Anton Enright

Group Leader - Enright research group

PhD in Computational Biology, University of Cambridge, 2003. Postdoctoral research at Memorial Sloan-Kettering Cancer Center, New York. At EMBL-EBI since 2008.

ORCID iD: 0000-0002-6090-3100

Tel:+ 44 (0) 1223 492 668 / Fax:+ 44 (0) 1223 492 620

Research

Find out about research activity in the Enright research group

Publications

2013

miR-221 affects multiple cancer pathways by modulating the level of hundreds messenger RNAs.
Lupini L, Bassi C, Ferracin M, Bartonicek N, D'Abundo L, Zagatti B, Callegari E, Musa G, Moshiri F, Gramantieri L, Corrales FJ, Enright AJ, Sabbioni S, Negrini M.
Front Genet Volume 4 (2013) p.64
DOI: 10.3389/fgene.2013.00064

Multiple epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesis.
Di Giacomo M, Comazzetto S, Saini H, De Fazio S, Carrieri C, Morgan M, Vasiliauskaite L, Benes V, Enright AJ, O'Carroll D.
Mol Cell Volume 50 (2013) p.601-608
DOI: 10.1016/j.molcel.2013.04.026

Depletion of HPV16 early genes induces autophagy and senescence in a cervical carcinogenesis model, regardless of viral physical state.
Hanning JE, Saini HK, Murray MJ, Caffarel MM, van Dongen S, Ward D, Barker EM, Scarpini CG, Groves IJ, Stanley MA, Enright AJ, Pett MR, Coleman N.
J Pathol Volume 231 (2013) p.354-366
DOI: 10.1002/path.4244

Kraken: a set of tools for quality control and analysis of high-throughput sequence data.
Davis MP, van Dongen S, Abreu-Goodger C, Bartonicek N, Enright AJ.
Methods Volume 63 (2013) p.41-49
DOI: 10.1016/j.ymeth.2013.06.027

LIN28 Expression in malignant germ cell tumors downregulates let-7 and increases oncogene levels.
Murray MJ, Saini HK, Siegler CA, Hanning JE, Barker EM, van Dongen S, Ward DM, Raby KL, Groves IJ, Scarpini CG, Pett MR, Thornton CM, Enright AJ, Nicholson JC, Coleman N, CCLG.
Cancer Res Volume 73 (2013) p.4872-4884
DOI: 10.1158/0008-5472.can-12-2085

Enhanced susceptibility to Citrobacter rodentium infection in microRNA-155-deficient mice.
Clare S, John V, Walker AW, Hill JL, Abreu-Goodger C, Hale C, Goulding D, Lawley TD, Mastroeni P, Frankel G, Enright AJ, Vigorito E, Dougan G.
Infect Immun Volume 81 (2013) p.723-732
DOI: 10.1128/iai.00969-12

The zebrafish reference genome sequence and its relationship to the human genome.
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assunção JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Ürün Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberländer M, Rudolph-Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nüsslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL.
Nature Volume 496 (2013) p.498-503
DOI: 10.1038/nature12111

Detecting and comparing non-coding RNAs in the high-throughput era.
Bussotti G, Notredame C, Enright AJ.
Int J Mol Sci Volume 14 (2013) p.15423-15458
DOI: 10.3390/ijms140815423

2012

MicroRNA-9 inhibition of cell proliferation and identification of novel miR-9 targets by transcriptome profiling in breast cancer cells.
Selcuklu SD, Donoghue MT, Rehmet K, de Souza Gomes M, Fort A, Kovvuru P, Muniyappa MK, Kerin MJ, Enright AJ, Spillane C.
J Biol Chem Volume 287 (2012) p.29516-29528
DOI: 10.1074/jbc.m111.335943

Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines.
Davis MP, Abreu-Goodger C, van Dongen S, Lu D, Tate PH, Bartonicek N, Kutter C, Liu P, Skarnes WC, Enright AJ, Dunham I.
PLoS One Volume 7 (2012) p.e41762
DOI: 10.1371/journal.pone.0041762

MiR-25 regulates Wwp2 and Fbxw7 and promotes reprogramming of mouse fibroblast cells to iPSCs.
Lu D, Davis MP, Abreu-Goodger C, Wang W, Campos LS, Siede J, Vigorito E, Skarnes WC, Dunham I, Enright AJ, Liu P.
PLoS One Volume 7 (2012) p.e40938
DOI: 10.1371/journal.pone.0040938

Extent, causes, and consequences of small RNA expression variation in human adipose tissue.
Parts L, Hedman ÅK, Keildson S, Knights AJ, Abreu-Goodger C, van de Bunt M, Guerra-Assunção JA, Bartonicek N, van Dongen S, Mägi R, Nisbet J, Barrett A, Rantalainen M, Nica AC, Quail MA, Small KS, Glass D, Enright AJ, Winn J, MuTHER Consortium, Deloukas P, Dermitzakis ET, McCarthy MI, Spector TD, Durbin R, Lindgren CM.
PLoS Genet Volume 8 (2012) p.e1002704
DOI: 10.1371/journal.pgen.1002704

Large-scale analysis of microRNA evolution.
Guerra-Assunção JA, Enright AJ.
BMC Genomics Volume 13 (2012) p.218
DOI: 10.1186/1471-2164-13-218

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data.
Hu M, Ayub Q, Guerra-Assunção JA, Long Q, Ning Z, Huang N, Romero IG, Mamanova L, Akan P, Liu X, Coffey AJ, Turner DJ, Swerdlow H, Burton J, Quail MA, Conrad DF, Enright AJ, Tyler-Smith C, Xue Y.
Hum Genet Volume 131 (2012) p.665-674
DOI: 10.1007/s00439-011-1111-9

Targeted deletion of microRNA-22 promotes stress-induced cardiac dilation and contractile dysfunction.
Gurha P, Abreu-Goodger C, Wang T, Ramirez MO, Drumond AL, van Dongen S, Chen Y, Bartonicek N, Enright AJ, Lee B, Kelm RJ Jr, Reddy AK, Taffet GE, Bradley A, Wehrens XH, Entman ML, Rodriguez A.
Circulation Volume 125 (2012) p.2751-2761
DOI: 10.1161/circulationaha.111.044354

A Neuronal Transcriptome Response Involving Stress Pathways is Buffered by Neuronal microRNAs.
Manakov SA, Morton A, Enright AJ, Grant SG.
Front Neurosci Volume 6 (2012) p.156
DOI: 10.3389/fnins.2012.00156

2011

The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.
Nature Volume 480 (2011) p.259-263
DOI: 10.1038/nature10547

MiR-221 influences effector functions and actin cytoskeleton in mast cells.
Mayoral RJ, Deho L, Rusca N, Bartonicek N, Saini HK, Enright AJ, Monticelli S.
PLoS One Volume 6 (2011) p.e26133
DOI: 10.1371/journal.pone.0026133

Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion.
Puri V, Goyal A, Sankaranarayanan R, Enright AJ, Vaidya T.
BMC Evol Biol Volume 11 (2011) p.334
DOI: 10.1186/1471-2148-11-334

RNAcentral: A vision for an international database of RNA sequences.
Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.
RNA Volume 17 (2011) p.1941-1946
DOI: 10.1261/rna.2750811

Messenger RNA and microRNA profiling during early mouse EB formation.
Tripathi R, Saini HK, Rad R, Abreu-Goodger C, van Dongen S, Enright AJ.
Gene Expr Patterns Volume 11 (2011) p.334-344
DOI: 10.1016/j.gep.2011.03.004

2010

iMotifs: an integrated sequence motif visualization and analysis environment.
Piipari M, Down TA, Saini H, Enright A, Hubbard TJ.
Bioinformatics Volume 26 (2010) p.843-844
DOI: 10.1093/bioinformatics/btq026

Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs.
Santhakumar D, Forster T, Laqtom NN, Fragkoudis R, Dickinson P, Abreu-Goodger C, Manakov SA, Choudhury NR, Griffiths SJ, Vermeulen A, Enright AJ, Dutia B, Kohl A, Ghazal P, Buck AH.
Proc Natl Acad Sci U S A Volume 107 (2010) p.13830-13835
DOI: 10.1073/pnas.1008861107

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis.
Sudbery I, Enright AJ, Fraser AG, Dunham I.
BMC Genomics Volume 11 (2010) p.175
DOI: 10.1186/1471-2164-11-175

SylArray: a web server for automated detection of miRNA effects from expression data.
Bartonicek N, Enright AJ.
Bioinformatics Volume 26 (2010) p.2900-2901
DOI: 10.1093/bioinformatics/btq545

Efficient inhibition of miR-155 function in vivo by peptide nucleic acids.
Fabani MM, Abreu-Goodger C, Williams D, Lyons PA, Torres AG, Smith KG, Enright AJ, Gait MJ, Vigorito E.
Nucleic Acids Res Volume 38 (2010) p.4466-4475
DOI: 10.1093/nar/gkq160

The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression.
Murray MJ, Saini HK, van Dongen S, Palmer RD, Muralidhar B, Pett MR, Piipari M, Thornton CM, Nicholson JC, Enright AJ, Coleman N.
Mol Cancer Volume 9 (2010) p.290
DOI: 10.1186/1476-4598-9-290

Malignant germ cell tumors display common microRNA profiles resulting in global changes in expression of messenger RNA targets.
Palmer RD, Murray MJ, Saini HK, van Dongen S, Abreu-Goodger C, Muralidhar B, Pett MR, Thornton CM, Nicholson JC, Enright AJ, Coleman N, Children's Cancer and Leukaemia Group.
Cancer Res Volume 70 (2010) p.2911-2923
DOI: 10.1158/0008-5472.can-09-3301

MapMi: automated mapping of microRNA loci.
Guerra-Assunção JA, Enright AJ.
BMC Bioinformatics Volume 11 (2010) p.133
DOI: 10.1186/1471-2105-11-133

The miR-144/451 locus is required for erythroid homeostasis.
Rasmussen KD, Simmini S, Abreu-Goodger C, Bartonicek N, Di Giacomo M, Bilbao-Cortes D, Horos R, Von Lindern M, Enright AJ, O'Carroll D.
J Exp Med Volume 207 (2010) p.1351-1358
DOI: 10.1084/jem.20100458

2009

An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice.
Lewis MA, Quint E, Glazier AM, Fuchs H, De Angelis MH, Langford C, van Dongen S, Abreu-Goodger C, Piipari M, Redshaw N, Dalmay T, Moreno-Pelayo MA, Enright AJ, Steel KP.
Nat Genet Volume 41 (2009) p.614-618
DOI: 10.1038/ng.369

Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation.
Manakov SA, Grant SG, Enright AJ.
BMC Genomics Volume 10 (2009) p.419
DOI: 10.1186/1471-2164-10-419

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.
Mishima Y, Abreu-Goodger C, Staton AA, Stahlhut C, Shou C, Cheng C, Gerstein M, Enright AJ, Giraldez AJ.
Genes Dev Volume 23 (2009) p.619-632
DOI: 10.1101/gad.1760209

Network visualization and analysis of gene expression data using BioLayout Express(3D).
Theocharidis A, van Dongen S, Enright AJ, Freeman TC.
Nat Protoc Volume 4 (2009) p.1535-1550
DOI: 10.1038/nprot.2009.177

2008

Detecting microRNA binding and siRNA off-target effects from expression data.
van Dongen S, Abreu-Goodger C, Enright AJ.
Nat Methods Volume 5 (2008) p.1023-1025
DOI: 10.1038/nmeth.1267

A logic-based diagram of signalling pathways central to macrophage activation.
Raza S, Robertson KA, Lacaze PA, Page D, Enright AJ, Ghazal P, Freeman TC.
BMC Syst Biol Volume 2 (2008) p.36
DOI: 10.1186/1752-0509-2-36

Computational prediction of protein-protein interactions.
Skrabanek L, Saini HK, Bader GD, Enright AJ.
Mol Biotechnol Volume 38 (2008) p.1-17
DOI: 10.1007/s12033-007-0069-2

miRBase: tools for microRNA genomics.
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.
Nucleic Acids Res Volume 36 (2008) p.d154-8
DOI: 10.1093/nar/gkm952

Fusion and fission of genes define a metric between fungal genomes.
Durrens P, Nikolski M, Sherman D.
PLoS Comput Biol Volume 4 (2008) p.e1000200
DOI: 10.1371/journal.pcbi.1000200

Annotation of mammalian primary microRNAs.
Saini HK, Enright AJ, Griffiths-Jones S.
BMC Genomics Volume 9 (2008) p.564
DOI: 10.1186/1471-2164-9-564

2007

microRNA-155 regulates the generation of immunoglobulin class-switched plasma cells.
Vigorito E, Perks KL, Abreu-Goodger C, Bunting S, Xiang Z, Kohlhaas S, Das PP, Miska EA, Rodriguez A, Bradley A, Smith KG, Rada C, Enright AJ, Toellner KM, Maclennan IC, Turner M.
Immunity Volume 27 (2007) p.847-859
DOI: 10.1016/j.immuni.2007.10.009

Construction, visualisation, and clustering of transcription networks from microarray expression data.
Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.
PLoS Comput Biol Volume 3 (2007) p.2032-2042
DOI: 10.1371/journal.pcbi.0030206

Denoising inferred functional association networks obtained by gene fusion analysis.
Kamburov A, Goldovsky L, Freilich S, Kapazoglou A, Kunin V, Enright AJ, Tsaftaris A, Ouzounis CA.
BMC Genomics Volume 8 (2007) p.460
DOI: 10.1186/1471-2164-8-460

Genomic analysis of human microRNA transcripts.
Saini HK, Griffiths-Jones S, Enright AJ.
Proc Natl Acad Sci U S A Volume 104 (2007) p.17719-17724
DOI: 10.1073/pnas.0703890104

A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway.
O'Carroll D, Mecklenbrauker I, Das PP, Santana A, Koenig U, Enright AJ, Miska EA, Tarakhovsky A.
Genes Dev Volume 21 (2007) p.1999-2004
DOI: 10.1101/gad.1565607

Prediction of microRNA targets.
Mazière P, Enright AJ.
Drug Discov Today Volume 12 (2007) p.452-458
DOI: 10.1016/j.drudis.2007.04.002

Requirement of bic/microRNA-155 for normal immune function.
Rodriguez A, Vigorito E, Clare S, Warren MV, Couttet P, Soond DR, van Dongen S, Grocock RJ, Das PP, Miska EA, Vetrie D, Okkenhaug K, Enright AJ, Dougan G, Turner M, Bradley A.
Science Volume 316 (2007) p.608-611
DOI: 10.1126/science.1139253

2006

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.
Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, Van Dongen S, Inoue K, Enright AJ, Schier AF.
Science Volume 312 (2006) p.75-79
DOI: 10.1126/science.1122689

RNA editing of human microRNAs.
Blow MJ, Grocock RJ, van Dongen S, Enright AJ, Dicks E, Futreal PA, Wooster R, Stratton MR.
Genome Biol Volume 7 (2006) p.r27
DOI: 10.1186/gb-2006-7-4-r27

miRBase: microRNA sequences, targets and gene nomenclature.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.
Nucleic Acids Res Volume 34 (2006) p.d140-4
DOI: 10.1093/nar/gkj112

2005

MagicMatch--cross-referencing sequence identifiers across databases.
Smith M, Kunin V, Goldovsky L, Enright AJ, Ouzounis CA.
Bioinformatics Volume 21 (2005) p.3429-3430
DOI: 10.1093/bioinformatics/bti548

BioLayout(Java): versatile network visualisation of structural and functional relationships.
Goldovsky L, Cases I, Enright AJ, Ouzounis CA.
Appl Bioinformatics Volume 4 (2005) p.71-74
DOI: 10.2165/00822942-200504010-00009

Correction: Human MicroRNA Targets.
John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS.
PLoS Biol Volume 3 (2005) p.

CoGenT++: an extensive and extensible data environment for computational genomics.
Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.
Bioinformatics Volume 21 (2005) p.3806-3810
DOI: 10.1093/bioinformatics/bti579

MicroRNAs regulate brain morphogenesis in zebrafish.
Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF.
Science Volume 308 (2005) p.833-838
DOI: 10.1126/science.1109020

2004

Identification of virus-encoded microRNAs.
Pfeffer S, Zavolan M, Grässer FA, Chien M, Russo JJ, Ju J, John B, Enright AJ, Marks D, Sander C, Tuschl T.
Science Volume 304 (2004) p.734-736
DOI: 10.1126/science.1096781

Detection of functional modules from protein interaction networks.
Pereira-Leal JB, Enright AJ, Ouzounis CA.
Proteins Volume 54 (2004) p.49-57
DOI: 10.1002/prot.10505

Human MicroRNA targets.
John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS.
PLoS Biol Volume 2 (2004) p.e363
DOI: 10.1371/journal.pbio.0020363

Intermolecular interactions and biological pathways
Bader GD, Enright AJ.
Volume (2004) p.254

2003

MicroRNA Targets in Drosophila.
Enright A, John B, Gaul U, Tuschl T, Sander C, Marks D.
Genome Biol Volume 4 (2003) p.p8-p8

Myriads of protein families, and still counting.
Kunin V, Cases I, Enright AJ, de Lorenzo V, Ouzounis CA.
Genome Biol Volume 4 (2003) p.401
DOI: 10.1186/gb-2003-4-2-401

Classification schemes for protein structure and function.
Ouzounis CA, Coulson RM, Enright AJ, Kunin V, Pereira-Leal JB.
Nat Rev Genet Volume 4 (2003) p.508-519
DOI: 10.1038/nrg1113

Evaluation of annotation strategies using an entire genome sequence.
Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, Blaschke C, Valencia A, Brett D, Martin D, Leroy C, Rigoutsos I, Sander C, Ouzounis CA.
Bioinformatics Volume 19 (2003) p.717-726
DOI: 10.1093/bioinformatics/btg077

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.
Janssen P, Enright AJ, Audit B, Cases I, Goldovsky L, Harte N, Kunin V, Ouzounis CA.
Bioinformatics Volume 19 (2003) p.1451-1452
DOI: 10.1093/bioinformatics/btg161

Mapping functional associations in the entire genome of Drosophila melanogaster using fusion analysis.
Iliopoulos I, Enright AJ, Poullet P, Ouzounis CA.
Comp Funct Genomics Volume 4 (2003) p.337-341
DOI: 10.1002/cfg.287

MicroRNA targets in Drosophila.
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS.
Genome Biol Volume 5 (2003) p.r1
DOI: 10.1186/gb-2003-5-1-r1

Protein families and TRIBES in genome sequence space.
Enright AJ, Kunin V, Ouzounis CA.
Nucleic Acids Res Volume 31 (2003) p.4632-4638
DOI: 10.1093/nar/gkg495

2002

Computational analysis of protein function within complete genomes
Enright AJ.
Volume (2002) p.

An efficient algorithm for large-scale detection of protein families.
Enright AJ, Van Dongen S, Ouzounis CA.
Nucleic Acids Res Volume 30 (2002) p.1575-1584
DOI: 10.1093/nar/30.7.1575

2001

A genome-wide survey of RS domain proteins.
Boucher L, Ouzounis CA, Enright AJ, Blencowe BJ.
RNA Volume 7 (2001) p.1693-1701

BioLayout--an automatic graph layout algorithm for similarity visualization.
Enright AJ, Ouzounis CA.
Bioinformatics Volume 17 (2001) p.853-854
DOI: 10.1093/bioinformatics/17.9.853

Transcription-associated protein families are primarily taxon-specific.
Coulson RM, Enright AJ, Ouzounis CA.
Bioinformatics Volume 17 (2001) p.95-97
DOI: 10.1093/bioinformatics/17.1.95

Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions.
Enright AJ, Ouzounis CA.
Genome Biol Volume 2 (2001) p.research0034
DOI: 10.1186/gb-2001-2-9-research0034

Textquest: document clustering of Medline abstracts for concept discovery in molecular biology.
Iliopoulos I, Enright AJ, Ouzounis CA.
Pac Symp Biocomput Volume (2001) p.384-395

2000

Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human.
McLysaght A, Enright AJ, Skrabanek L, Wolfe KH.
Yeast Volume 17 (2000) p.22-36
DOI: 10.1002/(sici)1097-0061(200004)17:1<22::aid-yea5>3.3.co;2-j

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.
Promponas VJ, Enright AJ, Tsoka S, Kreil DP, Leroy C, Hamodrakas S, Sander C, Ouzounis CA.
Bioinformatics Volume 16 (2000) p.915-922
DOI: 10.1093/bioinformatics/16.10.915

GeneRAGE: a robust algorithm for sequence clustering and domain detection.
Enright AJ, Ouzounis CA.
Bioinformatics Volume 16 (2000) p.451-457
DOI: 10.1093/bioinformatics/16.5.451

1999

Protein interaction maps for complete genomes based on gene fusion events.
Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA.
Nature Volume 402 (1999) p.86-90
DOI: 10.1038/47056