Ana Cerdeño-Tárraga

Ana Cerdeño-Tárraga

Scientific Database Curator - Cochrane team: European Nucleotide Archive

ORCID iD: 0000-0001-6635-3237

Tel:+ 44 (0) 1223 494 540 / Fax:+ 44 (0) 1223 494 468

Publications

2015

Content discovery and retrieval services at the European Nucleotide Archive.
Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, Plaister S, Radhakrishnan R, Rossello M, Senf A, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic acids research Volume 43 (2015) p.D23-9

2014

Assembly information services in the European Nucleotide Archive.
Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic acids research Volume 42 (2014) p.D38-43

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.
Toribio AL, Pickard D, Cerdeño-Tárraga AM, Petty NK, Thomson N, Salmond G, Dougan G.
Genome announcements Volume 2 (2014) p.

2013

A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.
Crossman LC, Chen H, Cerdeño-Tárraga AM, Brooks K, Quail MA, Pineiro SA, Hobley L, Sockett RE, Bentley SD, Parkhill J, Williams HN, Stine OC.
The ISME journal Volume 7 (2013) p.148-160

Facing growth in the European Nucleotide Archive.
Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V.
Nucleic acids research Volume 41 (2013) p.D30-5

2012

Major submissions tool developments at the European Nucleotide Archive.
Amid C, Birney E, Bower L, Cerdeño-Tárraga A, Cheng Y, Cleland I, Faruque N, Gibson R, Goodgame N, Hunter C, Jang M, Leinonen R, Liu X, Oisel A, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Rivière S, Rossello M, Senf A, Smirnov D, Ten Hoopen P, Vaughan D, Vaughan R, Zalunin V, Cochrane G.
Nucleic acids research Volume 40 (2012) p.D43-7

2011

The European Nucleotide Archive.
Leinonen R, Akhtar R, Birney E, Bower L, Cerdeno-Tárraga A, Cheng Y, Cleland I, Faruque N, Goodgame N, Gibson R, Hoad G, Jang M, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Sobhany S, Ten Hoopen P, Vaughan R, Zalunin V, Cochrane G.
Nucleic acids research Volume 39 (2011) p.D28-31

Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding blaCTX-M-14.
Cottell JL, Webber MA, Coldham NG, Taylor DL, Cerdeño-Tárraga AM, Hauser H, Thomson NR, Woodward MJ, Piddock LJ.
Emerging infectious diseases Volume 17 (2011) p.645-652

2010

The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli.
Petty NK, Bulgin R, Crepin VF, Cerdeño-Tárraga AM, Schroeder GN, Quail MA, Lennard N, Corton C, Barron A, Clark L, Toribio AL, Parkhill J, Dougan G, Frankel G, Thomson NR.
Journal of bacteriology Volume 192 (2010) p.525-538

Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis.
Patrick S, Blakely GW, Houston S, Moore J, Abratt VR, Bertalan M, Cerdeño-Tárraga AM, Quail MA, Corton N, Corton C, Bignell A, Barron A, Clark L, Bentley SD, Parkhill J.
Microbiology (Reading, England) Volume 156 (2010) p.3255-3269

The sudden dominance of blaCTX-M harbouring plasmids in Shigella spp. Circulating in Southern Vietnam.
Nguyen NT, Ha V, Tran NV, Stabler R, Pham DT, Le TM, van Doorn HR, Cerdeño-Tárraga A, Thomson N, Campbell J, Nguyen VM, Tran TT, Pham MV, Cao TT, Wren B, Farrar J, Baker S.
PLoS neglected tropical diseases Volume 4 (2010) p.e702

2009

Genome watch: What a scorcher!
Cerdeño-Tárraga AM.
Nature reviews. Microbiology Volume 7 (2009) p.408-409

In silico identification of genes in bacteriophage DNA.
Kropinski AM, Borodovsky M, Carver TJ, Cerdeño-Tárraga AM, Darling A, Lomsadze A, Mahadevan P, Stothard P, Seto D, Van Domselaar G, Wishart DS.
Methods in molecular biology (Clifton, N.J.) Volume 502 (2009) p.57-89

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients.
Holden MTG, Seth-Smith HMB, Crossman LC, Sebaihia M, Bentley SD, Cerdeño-Tárraga AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P, Mil-Homens D, Rocha EPC, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR, Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J.
Journal of bacteriology Volume 191 (2009) p.2907-2907

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.
Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR.
Genome biology Volume 10 (2009) p.R51

The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients.
Holden MT, Seth-Smith HM, Crossman LC, Sebaihia M, Bentley SD, Cerdeño-Tárraga AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P, Mil-Homens D, Rocha EP, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR, Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J.
Journal of bacteriology Volume 191 (2009) p.261-277

2007

Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes.
Sebaihia M, Peck MW, Minton NP, Thomson NR, Holden MT, Mitchell WJ, Carter AT, Bentley SD, Mason DR, Crossman L, Paul CJ, Ivens A, Wells-Bennik MH, Davis IJ, Cerdeño-Tárraga AM, Churcher C, Quail MA, Chillingworth T, Feltwell T, Fraser A, Goodhead I, Hance Z, Jagels K, Larke N, Maddison M, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Sanders M, Simmonds M, White B, Whithead S, Parkhill J.
Genome research Volume 17 (2007) p.1082-1092

2006

Multireplicon genome architecture of Lactobacillus salivarius.
Claesson MJ, Li Y, Leahy S, Canchaya C, van Pijkeren JP, Cerdeño-Tárraga AM, Parkhill J, Flynn S, O'Sullivan GC, Collins JK, Higgins D, Shanahan F, Fitzgerald GF, van Sinderen D, O'Toole PW.
Proceedings of the National Academy of Sciences of the United States of America Volume 103 (2006) p.6718-6723

Faecal matters.
Walker A, Cerdeño-Tárraga A, Bentley S.
Nature reviews. Microbiology Volume 4 (2006) p.572-573

Animal, vegetable or mineral?
Cerdeño-Tárraga AM, Bentley S.
Nature reviews. Microbiology Volume 4 (2006) p.725-726

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.
Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R, Thomson NR, Roberts AP, Cerdeño-Tárraga AM, Wang H, Holden MT, Wright A, Churcher C, Quail MA, Baker S, Bason N, Brooks K, Chillingworth T, Cronin A, Davis P, Dowd L, Fraser A, Feltwell T, Hance Z, Holroyd S, Jagels K, Moule S, Mungall K, Price C, Rabbinowitsch E, Sharp S, Simmonds M, Stevens K, Unwin L, Whithead S, Dupuy B, Dougan G, Barrell B, Parkhill J.
Nature genetics Volume 38 (2006) p.779-786

2005

Massive attack.
Thomson N, Cerdeño-Tárraga A, Bentley S.
Nature reviews. Microbiology Volume 3 (2005) p.586-587

The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.
Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M, Cerdeño-Tárraga AM, Harris B, Doggett J, Ormond D, Mungall K, Clarke K, Feltwell T, Hance Z, Sanders M, Quail MA, Price C, Barrell BG, Parkhill J, Longbottom D.
Genome research Volume 15 (2005) p.629-640

Diversity at every level.
Crossman L, Cerdeño-Tárraga A, Parkhill J.
Nature reviews. Microbiology Volume 3 (2005) p.196-197

Extensive DNA inversions in the B. fragilis genome control variable gene expression.
Cerdeño-Tárraga AM, Patrick S, Crossman LC, Blakely G, Abratt V, Lennard N, Poxton I, Duerden B, Harris B, Quail MA, Barron A, Clark L, Corton C, Doggett J, Holden MT, Larke N, Line A, Lord A, Norbertczak H, Ormond D, Price C, Rabbinowitsch E, Woodward J, Barrell B, Parkhill J.
Science (New York, N.Y.) Volume 307 (2005) p.1463-1465

GI genomes.
Cerdeño-Tárraga A, Claesson MJ, Sebaihia M, Thomson NR.
Nature reviews. Microbiology Volume 3 (2005) p.368-369

2004

Pathogens in decay.
Cerdeño-Tárraga A, Thomson N, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.774-775

Sequencing the environment.
Crossman L, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.184-185

New environments, versatile genomes.
Cerdeño-Tárraga A, Crossman L, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.446-447

Pathogenomics of non-pathogens.
Holden M, Crossman L, Cerdeño-Tárraga A, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.91

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.
Holden MT, Titball RW, Peacock SJ, Cerdeño-Tárraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N, Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z, Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K, Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill J.
Proceedings of the National Academy of Sciences of the United States of America Volume 101 (2004) p.14240-14245

Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae.
Dover LG, Cerdeño-Tárraga AM, Pallen MJ, Parkhill J, Besra GS.
FEMS microbiology reviews Volume 28 (2004) p.225-250

Shrinking genomics.
Thomson NR, Sebaihia M, Cerdeño-Tárraga AM, Holden MT, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.11

Genomic pot pourri.
Bentley S, Crossman L, Cerdeño-Tárraga A, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.928-929

Chalk and cheese.
Crossman L, Cerdeño-Tárraga A, Thomson NR.
Nature reviews. Microbiology Volume 2 (2004) p.528-529

Some like it hot.
Sebaihia M, Crossman L, Cerdeño-Tárraga A, Holden M.
Nature reviews. Microbiology Volume 2 (2004) p.690-691

Strength in diversity.
Pain A, Crossman L, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Nature reviews. Microbiology Volume 2 (2004) p.358-359

Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands.
Mohd-Zain Z, Turner SL, Cerdeño-Tárraga AM, Lilley AK, Inzana TJ, Duncan AJ, Harding RM, Hood DW, Peto TE, Crook DW.
Journal of bacteriology Volume 186 (2004) p.8114-8122

2003

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeño-Tárraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ.
Nature genetics Volume 35 (2003) p.32-40

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.
Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J.
Nucleic acids research Volume 31 (2003) p.6516-6523

The magnificent seven.
Holden M, Bentley S, Sebaihia M, Thomson N, Cerdeño-Tárraga A, Parkhill J.
Trends in microbiology Volume 11 (2003) p.12-14

Pathogenomics.
Crossman L, Cerdeño-Tárraga A, Bentley S, Parkhill J.
Nature reviews. Microbiology Volume 1 (2003) p.176-177

A matter of fitness.
Cerdeño-Tárraga A, Crossman L, Parkhill J.
Trends in microbiology Volume 11 (2003) p.111-112

The value of comparison.
Thomson N, Sebaihia M, Cerdeño-Tárraga A, Bentley S, Crossman L, Parkhill J.
Nature reviews. Microbiology Volume 1 (2003) p.11-12

All walks of life.
Thomson NR, Cerdeño-Tárraga A, Crossman L, Sebaihia M, Parkhill J.
Trends in microbiology Volume 11 (2003) p.159-160

2002

Split personalities.
Holden M, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Trends in microbiology Volume 10 (2002) p.115

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).
Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA.
Nature Volume 417 (2002) p.141-147

Sibling rivalry.
Thomson N, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Trends in microbiology Volume 10 (2002) p.396-397

2001

The full monty.
Thomson N, Holden M, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Trends in microbiology Volume 9 (2001) p.411-412

Of staphs, streps and other things.
Sebaihia M, Cerdeño-Tárraga A, Thomson N, Parkhill J.
Trends in microbiology Volume 9 (2001) p.309

Genome sequence of Yersinia pestis, the causative agent of plague.
Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K, Cerdeño-Tárraga AM, Chillingworth T, Cronin A, Davies RM, Davis P, Dougan G, Feltwell T, Hamlin N, Holroyd S, Jagels K, Karlyshev AV, Leather S, Moule S, Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG.
Nature Volume 413 (2001) p.523-527

Lost and found.
Cerdeño-Tárraga A, Thomson N, Holden M, Sebaihia M, Parkhill J.
Trends in microbiology Volume 9 (2001) p.526-527

Size matters?
Thomson N, Sebaihia M, Holden M, Cerdeño-Tárraga A, Parkhill J.
Trends in microbiology Volume 9 (2001) p.359

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