Ana Cerdeño-Tárraga

Ana Cerdeño-Tárraga

Scientific Database Curator - Cochrane team: European Nucleotide Archive

ORCID iD: 0000-0001-6635-3237

Tel:+ 44 (0) 1223 494 540 / Fax:+ 44 (0) 1223 494 468

Publications

2014

Content discovery and retrieval services at the European Nucleotide Archive.
Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, Plaister S, Radhakrishnan R, Rossello M, Senf A, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic Acids Res Volume (2014) p.
DOI: 10.1093/nar/gku1129

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.
Toribio AL, Pickard D, Cerdeño-Tárraga AM, Petty NK, Thomson N, Salmond G, Dougan G.
Genome Announc Volume 2 (2014) p.
DOI: 10.1128/genomea.00146-14

Assembly information services in the European Nucleotide Archive.
Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.
Nucleic Acids Res Volume 42 (2014) p.d38-43
DOI: 10.1093/nar/gkt1082

2013

Facing growth in the European Nucleotide Archive.
Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V.
Nucleic Acids Res Volume 41 (2013) p.d30-5
DOI: 10.1093/nar/gks1175

A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.
Crossman LC, Chen H, Cerdeño-Tárraga AM, Brooks K, Quail MA, Pineiro SA, Hobley L, Sockett RE, Bentley SD, Parkhill J, Williams HN, Stine OC.
ISME J Volume 7 (2013) p.148-160
DOI: 10.1038/ismej.2012.90

2012

Major submissions tool developments at the European Nucleotide Archive.
Amid C, Birney E, Bower L, Cerdeño-Tárraga A, Cheng Y, Cleland I, Faruque N, Gibson R, Goodgame N, Hunter C, Jang M, Leinonen R, Liu X, Oisel A, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Rivière S, Rossello M, Senf A, Smirnov D, Ten Hoopen P, Vaughan D, Vaughan R, Zalunin V, Cochrane G.
Nucleic Acids Res Volume 40 (2012) p.d43-7
DOI: 10.1093/nar/gkr946

2011

The European Nucleotide Archive.
Leinonen R, Akhtar R, Birney E, Bower L, Cerdeno-Tárraga A, Cheng Y, Cleland I, Faruque N, Goodgame N, Gibson R, Hoad G, Jang M, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Sobhany S, Ten Hoopen P, Vaughan R, Zalunin V, Cochrane G.
Nucleic Acids Res Volume 39 (2011) p.d28-31
DOI: 10.1093/nar/gkq967

Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding blaCTX-M-14.
Cottell JL, Webber MA, Coldham NG, Taylor DL, Cerdeño-Tárraga AM, Hauser H, Thomson NR, Woodward MJ, Piddock LJ.
Emerg Infect Dis Volume 17 (2011) p.645-652
DOI: 10.3201/eid1704.101009

2010

The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli.
Petty NK, Bulgin R, Crepin VF, Cerdeño-Tárraga AM, Schroeder GN, Quail MA, Lennard N, Corton C, Barron A, Clark L, Toribio AL, Parkhill J, Dougan G, Frankel G, Thomson NR.
J Bacteriol Volume 192 (2010) p.525-538
DOI: 10.1128/jb.01144-09

The sudden dominance of blaCTX-M harbouring plasmids in Shigella spp. Circulating in Southern Vietnam.
Nguyen NT, Ha V, Tran NV, Stabler R, Pham DT, Le TM, van Doorn HR, Cerdeño-Tárraga A, Thomson N, Campbell J, Nguyen VM, Tran TT, Pham MV, Cao TT, Wren B, Farrar J, Baker S.
PLoS Negl Trop Dis Volume 4 (2010) p.e702
DOI: 10.1371/journal.pntd.0000702

Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis.
Patrick S, Blakely GW, Houston S, Moore J, Abratt VR, Bertalan M, Cerdeño-Tárraga AM, Quail MA, Corton N, Corton C, Bignell A, Barron A, Clark L, Bentley SD, Parkhill J.
Microbiology Volume 156 (2010) p.3255-3269
DOI: 10.1099/mic.0.042978-0

2009

The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients.
Holden MT, Seth-Smith HM, Crossman LC, Sebaihia M, Bentley SD, Cerdeño-Tárraga AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P, Mil-Homens D, Rocha EP, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR, Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J.
J Bacteriol Volume 191 (2009) p.261-277
DOI: 10.1128/jb.01230-08

In silico identification of genes in bacteriophage DNA.
Kropinski AM, Borodovsky M, Carver TJ, Cerdeño-Tárraga AM, Darling A, Lomsadze A, Mahadevan P, Stothard P, Seto D, Van Domselaar G, Wishart DS.
Methods Mol Biol Volume 502 (2009) p.57-89
DOI: 10.1007/978-1-60327-565-1_6

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.
Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR.
Genome Biol Volume 10 (2009) p.r51
DOI: 10.1186/gb-2009-10-5-r51

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients.
Holden MTG, Seth-Smith HMB, Crossman LC, Sebaihia M, Bentley SD, Cerdeño-Tárraga AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P, Mil-Homens D, Rocha EPC, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR, Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J.
J Bacteriol Volume 191 (2009) p.2907-2907

Genome watch: What a scorcher!
Cerdeño-Tárraga AM.
Nat Rev Microbiol Volume 7 (2009) p.408-409
DOI: 10.1038/nrmicro2154

2007

Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes.
Sebaihia M, Peck MW, Minton NP, Thomson NR, Holden MT, Mitchell WJ, Carter AT, Bentley SD, Mason DR, Crossman L, Paul CJ, Ivens A, Wells-Bennik MH, Davis IJ, Cerdeño-Tárraga AM, Churcher C, Quail MA, Chillingworth T, Feltwell T, Fraser A, Goodhead I, Hance Z, Jagels K, Larke N, Maddison M, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Sanders M, Simmonds M, White B, Whithead S, Parkhill J.
Genome Res Volume 17 (2007) p.1082-1092
DOI: 10.1101/gr.6282807

2006

Faecal matters.
Walker A, Cerdeño-Tárraga A, Bentley S.
Nat Rev Microbiol Volume 4 (2006) p.572-573
DOI: 10.1038/nrmicro1483

Multireplicon genome architecture of Lactobacillus salivarius.
Claesson MJ, Li Y, Leahy S, Canchaya C, van Pijkeren JP, Cerdeño-Tárraga AM, Parkhill J, Flynn S, O'Sullivan GC, Collins JK, Higgins D, Shanahan F, Fitzgerald GF, van Sinderen D, O'Toole PW.
Proc Natl Acad Sci U S A Volume 103 (2006) p.6718-6723
DOI: 10.1073/pnas.0511060103

Animal, vegetable or mineral?
Cerdeño-Tárraga AM, Bentley S.
Nat Rev Microbiol Volume 4 (2006) p.725-726
DOI: 10.1038/nrmicro1508

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.
Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R, Thomson NR, Roberts AP, Cerdeño-Tárraga AM, Wang H, Holden MT, Wright A, Churcher C, Quail MA, Baker S, Bason N, Brooks K, Chillingworth T, Cronin A, Davis P, Dowd L, Fraser A, Feltwell T, Hance Z, Holroyd S, Jagels K, Moule S, Mungall K, Price C, Rabbinowitsch E, Sharp S, Simmonds M, Stevens K, Unwin L, Whithead S, Dupuy B, Dougan G, Barrell B, Parkhill J.
Nat Genet Volume 38 (2006) p.779-786
DOI: 10.1038/ng1830

2005

Diversity at every level.
Crossman L, Cerdeño-Tárraga A, Parkhill J.
Nat Rev Microbiol Volume 3 (2005) p.196-197
DOI: 10.1038/nrmicro1071

Massive attack.
Thomson N, Cerdeño-Tárraga A, Bentley S.
Nat Rev Microbiol Volume 3 (2005) p.586-587
DOI: 10.1038/nrmicro1212

GI genomes.
Cerdeño-Tárraga A, Claesson MJ, Sebaihia M, Thomson NR.
Nat Rev Microbiol Volume 3 (2005) p.368-369
DOI: 10.1038/nrmicro1153

Extensive DNA inversions in the B. fragilis genome control variable gene expression.
Cerdeño-Tárraga AM, Patrick S, Crossman LC, Blakely G, Abratt V, Lennard N, Poxton I, Duerden B, Harris B, Quail MA, Barron A, Clark L, Corton C, Doggett J, Holden MT, Larke N, Line A, Lord A, Norbertczak H, Ormond D, Price C, Rabbinowitsch E, Woodward J, Barrell B, Parkhill J.
Science Volume 307 (2005) p.1463-1465
DOI: 10.1126/science.1107008

The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.
Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M, Cerdeño-Tárraga AM, Harris B, Doggett J, Ormond D, Mungall K, Clarke K, Feltwell T, Hance Z, Sanders M, Quail MA, Price C, Barrell BG, Parkhill J, Longbottom D.
Genome Res Volume 15 (2005) p.629-640
DOI: 10.1101/gr.3684805

2004

Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands.
Mohd-Zain Z, Turner SL, Cerdeño-Tárraga AM, Lilley AK, Inzana TJ, Duncan AJ, Harding RM, Hood DW, Peto TE, Crook DW.
J Bacteriol Volume 186 (2004) p.8114-8122
DOI: 10.1128/jb.186.23.8114-8122.2004

Chalk and cheese.
Crossman L, Cerdeño-Tárraga A, Thomson NR.
Nat Rev Microbiol Volume 2 (2004) p.528-529
DOI: 10.1038/nrmicro932

Some like it hot.
Sebaihia M, Crossman L, Cerdeño-Tárraga A, Holden M.
Nat Rev Microbiol Volume 2 (2004) p.690-691
DOI: 10.1038/nrmicro980

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.
Holden MT, Titball RW, Peacock SJ, Cerdeño-Tárraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N, Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z, Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K, Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill J.
Proc Natl Acad Sci U S A Volume 101 (2004) p.14240-14245
DOI: 10.1073/pnas.0403302101

Shrinking genomics.
Thomson NR, Sebaihia M, Cerdeño-Tárraga AM, Holden MT, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.11
DOI: 10.1038/nrmicro800

Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae.
Dover LG, Cerdeño-Tárraga AM, Pallen MJ, Parkhill J, Besra GS.
FEMS Microbiol Rev Volume 28 (2004) p.225-250
DOI: 10.1016/j.femsre.2003.10.001

Genomic pot pourri.
Bentley S, Crossman L, Cerdeño-Tárraga A, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.928-929
DOI: 10.1038/nrmicro1051

New environments, versatile genomes.
Cerdeño-Tárraga A, Crossman L, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.446-447
DOI: 10.1038/nrmicro910

Sequencing the environment.
Crossman L, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.184-185
DOI: 10.1038/nrmicro847

Pathogens in decay.
Cerdeño-Tárraga A, Thomson N, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.774-775
DOI: 10.1038/nrmicro1009

Strength in diversity.
Pain A, Crossman L, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.358-359
DOI: 10.1038/nrmicro889

Pathogenomics of non-pathogens.
Holden M, Crossman L, Cerdeño-Tárraga A, Parkhill J.
Nat Rev Microbiol Volume 2 (2004) p.91
DOI: 10.1038/nrmicro825

2003

A matter of fitness.
Cerdeño-Tárraga A, Crossman L, Parkhill J.
Trends Microbiol Volume 11 (2003) p.111-112
DOI: 10.1016/s0966-842x(03)00037-4

All walks of life.
Thomson NR, Cerdeño-Tárraga A, Crossman L, Sebaihia M, Parkhill J.
Trends Microbiol Volume 11 (2003) p.159-160
DOI: 10.1016/s0966-842x(03)00065-9

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.
Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J.
Nucleic Acids Res Volume 31 (2003) p.6516-6523
DOI: 10.1093/nar/gkg874

The value of comparison.
Thomson N, Sebaihia M, Cerdeño-Tárraga A, Bentley S, Crossman L, Parkhill J.
Nat Rev Microbiol Volume 1 (2003) p.11-12
DOI: 10.1038/nrmicro734

Pathogenomics.
Crossman L, Cerdeño-Tárraga A, Bentley S, Parkhill J.
Nat Rev Microbiol Volume 1 (2003) p.176-177
DOI: 10.1038/nrmicro778

The magnificent seven.
Holden M, Bentley S, Sebaihia M, Thomson N, Cerdeño-Tárraga A, Parkhill J.
Trends Microbiol Volume 11 (2003) p.12-14
DOI: 10.1016/s0966-842x(02)00009-4

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeño-Tárraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ.
Nat Genet Volume 35 (2003) p.32-40
DOI: 10.1038/ng1227

2002

Sibling rivalry.
Thomson N, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Trends Microbiol Volume 10 (2002) p.396-397
DOI: 10.1016/s0966-842x(02)02439-3

Split personalities.
Holden M, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Trends Microbiol Volume 10 (2002) p.115
DOI: 10.1016/s0966-842x(02)02320-x

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).
Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA.
Nature Volume 417 (2002) p.141-147
DOI: 10.1038/417141a

2001

Lost and found.
Cerdeño-Tárraga A, Thomson N, Holden M, Sebaihia M, Parkhill J.
Trends Microbiol Volume 9 (2001) p.526-527
DOI: 10.1016/s0966-842x(01)02236-3

Genome sequence of Yersinia pestis, the causative agent of plague.
Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K, Cerdeño-Tárraga AM, Chillingworth T, Cronin A, Davies RM, Davis P, Dougan G, Feltwell T, Hamlin N, Holroyd S, Jagels K, Karlyshev AV, Leather S, Moule S, Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG.
Nature Volume 413 (2001) p.523-527
DOI: 10.1038/35097083

The full monty.
Thomson N, Holden M, Sebaihia M, Cerdeño-Tárraga A, Parkhill J.
Trends Microbiol Volume 9 (2001) p.411-412
DOI: 10.1016/s0966-842x(01)02178-3

Size matters?
Thomson N, Sebaihia M, Holden M, Cerdeño-Tárraga A, Parkhill J.
Trends Microbiol Volume 9 (2001) p.359
DOI: 10.1016/s0966-842x(01)02136-9

Of staphs, streps and other things.
Sebaihia M, Cerdeño-Tárraga A, Thomson N, Parkhill J.
Trends Microbiol Volume 9 (2001) p.309
DOI: 10.1016/s0966-842x(01)02095-9

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