Aleksandras Gutmanas

Aleksandras Gutmanas

Project Leader NMR - Kleywegt team: Protein Data Bank in Europe

ORCID iD: 0000-0001-6311-0176

Tel:+ 44 (0) 1223 492 583 / Fax:+ 44 (0) 1223 494 468

Publications

2014

An overview of tools for the validation of protein NMR structures.
Vuister GW, Fogh RH, Hendrickx PM, Doreleijers JF, Gutmanas A.
J Biomol NMR Volume 58 (2014) p.259-285
DOI: 10.1007/s10858-013-9750-x

PDBe: Protein Data Bank in Europe.
Gutmanas A, Alhroub Y, Battle GM, Berrisford JM, Bochet E, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Gore SP, Haslam P, Hatherley R, Hendrickx PM, Hirshberg M, Lagerstedt I, Mir S, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sen S, Slowley RA, Velankar S, Wainwright ME, Kleywegt GJ.
Nucleic Acids Res Volume 42 (2014) p.d285-91
DOI: 10.1093/nar/gkt1180

2013

Vivaldi: visualization and validation of biomacromolecular NMR structures from the PDB.
Hendrickx PM, Gutmanas A, Kleywegt GJ.
Proteins Volume 81 (2013) p.583-591
DOI: 10.1002/prot.24213

The role of structural bioinformatics resources in the era of integrative structural biology.
Gutmanas A, Oldfield TJ, Patwardhan A, Sen S, Velankar S, Kleywegt GJ.
Acta Crystallogr D Biol Crystallogr Volume 69 (2013) p.710-721
DOI: 10.1107/s0907444913001157

2012

Blind testing of routine, fully automated determination of protein structures from NMR data.
Rosato A, Aramini JM, Arrowsmith C, Bagaria A, Baker D, Cavalli A, Doreleijers JF, Eletsky A, Giachetti A, Guerry P, Gutmanas A, Güntert P, He Y, Herrmann T, Huang YJ, Jaravine V, Jonker HR, Kennedy MA, Lange OF, Liu G, Malliavin TE, Mani R, Mao B, Montelione GT, Nilges M, Rossi P, van der Schot G, Schwalbe H, Szyperski TA, Vendruscolo M, Vernon R, Vranken WF, Vries Sd, Vuister GW, Wu B, Yang Y, Bonvin AM.
Structure Volume 20 (2012) p.227-236
DOI: 10.1016/j.str.2012.01.002

PDBe: Protein Data Bank in Europe.
Velankar S, Alhroub Y, Best C, Caboche S, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Heuson E, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sen S, Slowley R, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ.
Nucleic Acids Res Volume 40 (2012) p.d445-52
DOI: 10.1093/nar/gkr998

2011

PDBe: Protein Data Bank in Europe.
Velankar S, Alhroub Y, Alili A, Best C, Boutselakis HC, Caboche S, Conroy MJ, Dana JM, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Penkett CJ, Pineda-Castillo J, Rinaldi L, Sahni G, Sawka G, Sen S, Slowley R, Sousa da Silva AW, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ.
Nucleic Acids Res Volume 39 (2011) p.d402-10
DOI: 10.1093/nar/gkq985

A novel strategy for NMR resonance assignment and protein structure determination.
Lemak A, Gutmanas A, Chitayat S, Karra M, Farès C, Sunnerhagen M, Arrowsmith CH.
J Biomol NMR Volume 49 (2011) p.27-38
DOI: 10.1007/s10858-010-9458-0

2010

Straightforward and complete deposition of NMR data to the PDBe.
Penkett CJ, van Ginkel G, Velankar S, Swaminathan J, Ulrich EL, Mading S, Stevens TJ, Fogh RH, Gutmanas A, Kleywegt GJ, Henrick K, Vranken WF.
J Biomol NMR Volume 48 (2010) p.85-92
DOI: 10.1007/s10858-010-9439-3

2006

Solution NMR in structural genomics.
Yee A, Gutmanas A, Arrowsmith CH.
Curr Opin Struct Biol Volume 16 (2006) p.611-617
DOI: 10.1016/j.sbi.2006.08.002

2005

Accuracy and robustness of three-way decomposition applied to NMR data.
Luan T, Orekhov VY, Gutmanas A, Billeter M.
J Magn Reson Volume 174 (2005) p.188-199
DOI: 10.1016/j.jmr.2005.02.009

2004

Accurate relaxation parameters for large proteins.
Gutmanas A, Tu L, Orekhov VY, Billeter M.
J Magn Reson Volume 167 (2004) p.107-113
DOI: 10.1016/j.jmr.2003.12.002

Specific DNA recognition by the Antp homeodomain: MD simulations of specific and nonspecific complexes.
Gutmanas A, Billeter M.
Proteins Volume 57 (2004) p.772-782
DOI: 10.1002/prot.20273

2002

Three-way decomposition of a complete 3D 15N-NOESY-HSQC.
Gutmanas A, Jarvoll P, Orekhov VY, Billeter M.
J Biomol NMR Volume 24 (2002) p.191-201
DOI: 10.1023/a:1021609314308