EMBL-EBI Web Services

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====== Workflows and Web Services ======

===== Workflow Systems =====

Many workflow systems support the use of Web Services as components in workflows. A set of tutorials are provided for a selection of workflow systems commonly used in bioinformatics:
  * [[.:07_Workflows:Kepler]]
  * [[.:07_Workflows:make]]
  * [[.:07_Workflows:Taverna]]
  * [[.:07_Workflows:Triana]]

Many other workflow and workbench systems can also use Web Services, for example:
  * [[http://www.bioclipse.net/|Bioclipse]]
  * [[http://www.bioextract.org/|BioExtract]]
  * [[http://galaxyproject.org/|Galaxy]]
  * [[http://www.geneious.com/|Geneious]]
  * [[http://www.geworkbench.org/|geWorkbench]]
  * [[http://www.gridworkflow.org/kwfgrid/gworkflowdl/docs/|The Generic Workflow Description Language Toolbox (GWorkflowDL)]]
  * [[http://www.bitlab-es.com/jorca/|jORCA]]
  * [[http://www.knime.org/|KNIME]] with [[http://tech.knime.org/webservice-client|Generic Web Service Client Node]]
  * [[http://pipeline.loni.ucla.edu/|LONI Pipeline]]
  * [[http://pegasus.isi.edu/|Pegasus]]
  * [[http://accelrys.com/products/scitegic/|Pipeline Pilot]]
  * [[http://research.microsoft.com/en-us/collaboration/tools/trident.aspx|Project Trident]]
  * [[http://ugene.unipro.ru/|UGENE]]
  * [[http://www.vistrails.org/|VisTrails]]
  * [[http://ccg.murdoch.edu.au/yabi/|YABI]]

A list of workflow management systems used in the biosciences can be found in [[http://en.wikipedia.org/wiki/Bioinformatics_workflow_management_systems|Wikipedia]].

===== Workflow Repositories =====

Pre-written workflows for a variety of platforms, including workflows using Web Services, are available from repositories:

  * [[http://library.kepler-project.org/kepler/|Kepler Analytical Component Repository]]
  * [[http://www.myexperiment.org/|myExperiment]]
  * [[http://shiwa-repo.cpc.wmin.ac.uk/shiwa-repo/|SHIWA Workflow Repository]]

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