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Table of Contents
MaxSprout (REST)DescriptionMaxSprout 1) generates protein backbone and side chain co-ordinates from a C(alpha) trace. The backbone is assembled from fragments taken from known structures. Side chain conformations are optimised in rotamer space using a rough potential energy function to avoid clashes. For more information see: ImportantWe kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 25 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime. Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the EMBL-EBI's Terms of Use. ClientsSample clients are provided for a number of programming languages. For details of how to use these clients, download the client and run the program without any arguments.
For further details of these tool-kits and workflow platforms see our Guide to Web Services. ResourcesThe service consists of a number of resources which indicate errors through the use of HTTP status codes. parametersList parameter names. Request
Response An XML document containing a list of parameter names. For example: http://www.ebi.ac.uk/Tools/services/rest/maxsprout/parameters/ parameterdetailsGet detailed information about a parameter. Request
Response An XML document providing details about the parameter. For example: http://www.ebi.ac.uk/Tools/services/rest/maxsprout/parameterdetails/coordinates. If the named parameter does not exist for the tool, a 400 HTTP status code will be returned with the message “com.sun.jersey.api.container.ContainerCheckedException: java.lang.Exception: parameter not found”. runSubmit a job with the specified parameters. Request
Note: this request must be made using POST, if GET is used a 405 HTTP status is returned with the description “The specified HTTP method is not allowed for the requested resource”. More detailed information about each parameter, including valid values can be obtained using the getParameterDetails(parameterId) operation. Response A plain text document containing the job identifier. statusGet the status of a submitted job. Request
Response A plain text document containing the job status. The values for the status are:
Further details can be found in Synchronous and Asynchronous Access: JDispatcher. resulttypesGet available result types for a finished job. Request
Response An XML document detailing the available result types. resultGet the job result of the specified type. Request
or
Response A document containing the result in the requested format. The MIME type of the returned document is set according to the format.
Note: when retrieving a result where more than one specific result is available, for example the 1)
Holm L. and Sander C. (1991)
Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors. J. Mol. Biol. 218(1):183-94 PubMed: 2002501 DOI: 10.1016/0022-2836(91)90883-8 | | ||||||||||||||||||||||||||||||||||||||||||||||||
