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services:so:censor_soap [2012/11/13 15:21]
hpm (172.22.68.212) created
services:so:censor_soap [2014/01/24 09:44] (current)
hpm (172.22.68.212)
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===== Description ===== ===== Description =====
-CENSOR ((Kohany, O., Gentles, A.J., Hankus. L. and Jurka, J. (2006)\\+CENSOR ((Kohany, O., Gentles, A.J., Hankus, L. and Jurka, J. (2006)\\
**Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.**\\ **Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.**\\
-BMC Bioinformatics 7:474; DOI: [[http://dx.doi.org/10.1186/1471-2105-7-474|10.1186/1471-2105-7-474]]; PubMed: [[http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=17064419&dataSource=MED|17064419]] )) screens sequences against a reference collection of sequence repeats, “censors” (masks) homologous portions with masking symbols and generates a report classifying all found repeats. +BMC Bioinformatics 7:474; DOI: [[http://dx.doi.org/10.1186/1471-2105-7-474|10.1186/1471-2105-7-474]]; PubMed: [[http://europepmc.org/abstract/MED/17064419|17064419]] )) screens sequences against a reference collection of sequence repeats, “censors” (masks) homologous portions with masking symbols and generates a report classifying all found repeats. CENSOR supports repeat finding and masking in both nucleotide and protein sequences.
For more information see: For more information see:
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===== Important ==== ===== Important ====
-We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 25 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.+We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 30 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
-Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/Information/termsofuse.html|EBI's Terms of Use]].+Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/about/terms-of-use|EMBL-EBI's Terms of Use]].
===== Clients ===== ===== Clients =====
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^ Language ^ Download ^ Requirements ^ ^ Language ^ Download ^ Requirements ^
-^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/Censor_Axis1.jar|Censor_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/CensorClient.java|CensorClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/downloads/java/lib-1.4.zip|lib-1.4.zip]]''. |+^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/CensorCliClient.exe|CensorCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/CensorClient.cs|CensorClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/CensorCliClient/CensorCliClient.cs|CensorCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[:tutorials:06_Programming:dot_net|.NET tutorial]] for details. | 
 +^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/Censor_Axis1.jar|Censor_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/CensorClient.java|CensorClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/ebiws-lib.zip|ebiws-lib.zip]]''. |
^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/censor_soaplite.pl|censor_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] | ^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/censor_soaplite.pl|censor_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] |
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Arguments: Arguments:
-  * ''email'': (**required**) user e-mail address.+  * ''email'': (**required**) user e-mail address. See [[help:faq#why_do_you_need_my_e-mail_address|Why do you need my e-mail address?]]
  * ''title'': job title. Default: "".   * ''title'': job title. Default: "".
  * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.   * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.
 
services/so/censor_soap.1352820085.txt · Last modified: 2012/11/13 15:21 by hpm
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