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services:sfc:readseq_soap [2012/09/05 09:34]
hpm (172.22.68.212) created
services:sfc:readseq_soap [2014/09/07 08:55] (current)
uludag (82.26.2.30) missing brackets
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====== Readseq (SOAP) ====== ====== Readseq (SOAP) ======
- 
-===== Important ==== 
- 
-Please note that this is a **beta service**, so please avoid using it in production environments. Please report any feedback or issues encountered to us via. [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EMBL-EBI Support]]. 
- 
-We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 25 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime. 
- 
-Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/Information/termsofuse.html|EBI's Terms of Use]]. 
===== Description ===== ===== Description =====
-Readseq reads and converts biosequences between a selection of common biological sequence formats, including EMBL, GenBank and fasta sequence formats.+Readseq ((Gilbert D. (2003)\\  
 +**Sequence File Format Conversion with Command-Line Readseq**\\  
 +Current Protocols in Bioinformatics, APPENDIX 1E\\  
 +PubMed: [[http://europepmc.org/abstract/MED/18428689|18428689]]\\  
 +DOI: [[http://dx.doi.org/10.1002/0471250953.bia01es00|10.1002/0471250953.bia01es00]] \\ 
 +)) ((http://iubio.bio.indiana.edu/soft/molbio/readseq/java/)) reads and converts biosequences between a selection of common biological sequence formats, including EMBL, GenBank and fasta sequence formats.
For more information see: For more information see:
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  * [[.:Readseq (REST)|REST service]]   * [[.:Readseq (REST)|REST service]]
  * [[http://iubio.bio.indiana.edu/soft/molbio/readseq/java/|Readseq home]]   * [[http://iubio.bio.indiana.edu/soft/molbio/readseq/java/|Readseq home]]
 +
 +===== Important ====
 +
 +We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 30 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
 +
 +Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/about/terms-of-use|EMBL-EBI's Terms of Use]].
===== Clients ===== ===== Clients =====
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^ Language ^ Download ^ Requirements ^ ^ Language ^ Download ^ Requirements ^
^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/ReadseqCliClient.exe|ReadseqCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/ReadseqClient.cs|ReadseqClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/ReadseqCliClient/ReadseqCliClient.cs|ReadseqCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[tutorials:06_Programming:dot_net|.NET tutorial]] for details. | ^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/ReadseqCliClient.exe|ReadseqCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/ReadseqClient.cs|ReadseqClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/ReadseqCliClient/ReadseqCliClient.cs|ReadseqCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[tutorials:06_Programming:dot_net|.NET tutorial]] for details. |
-^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/Readseq_Axis1.jar|Readseq_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/ReadseqClient.java|ReadseqClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/downloads/java/lib-1.4.zip|lib-1.4.zip]]''. |+^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/Readseq_Axis1.jar|Readseq_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/ReadseqClient.java|ReadseqClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/ebiws-lib.zip|ebiws-lib.zip]]''. |
^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/readseq_soaplite.pl|readseq_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] | ^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/readseq_soaplite.pl|readseq_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] |
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===== WSDL ===== ===== WSDL =====
-The [[http://www.w3.org/TR/wsdl|WSDL]] for the Readseq SOAP service: http://www.ebi.ac.uk/Tools/services/soap/readseq?wsdl+The [[http://www.w3.org/TR/wsdl|WSDL]] for the Readseq (SOAP) service: http://www.ebi.ac.uk/Tools/services/soap/readseq?wsdl
===== Operations ===== ===== Operations =====
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Arguments: Arguments:
-  * ''email'': (**required**) user e-mail address.+  * ''email'': (**required**) user e-mail address. See [[help:faq#why_do_you_need_my_e-mail_address|Why do you need my e-mail address?]]
  * ''title'': job title. Default: "".   * ''title'': job title. Default: "".
  * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.   * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.
 
services/sfc/readseq_soap.1346834072.txt · Last modified: 2012/09/05 09:34 by hpm
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