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services:sfc:emboss_seqret_soap [2012/09/05 09:09]
hpm (172.22.68.212) created
services:sfc:emboss_seqret_soap [2014/01/24 09:43] (current)
hpm (172.22.68.212)
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====== EMBOSS seqret (SOAP) ====== ====== EMBOSS seqret (SOAP) ======
- 
-===== Important ==== 
- 
-Please note that this is a **beta service**, so please avoid using it in production environments. Please report any feedback or issues encountered to us via. [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EMBL-EBI Support]]. 
- 
-We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 25 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime. 
- 
-Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/Information/termsofuse.html|EBI's Terms of Use]]. 
===== Description ===== ===== Description =====
-EMBOSS Seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.+EMBOSS ((Rice P., Longden I. and Bleasby A. (2000)\\  
 +**EMBOSS: The European Molecular Biology Open Software Suite.**\\  
 +Trends Genet. 16(6)276-277\\  
 +PubMed: [[http://europepmc.org/abstract/MED/10827456|10827456]]\\  
 +DOI: [[http://dx.doi.org/10.1016/S0168-9525(00)02024-2|10.1016/S0168-9525(00)02024-2]]\\  
 +)) ((http://emboss.open-bio.org/)) seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.
For more information see: For more information see:
  * Web form: [[http://www.ebi.ac.uk/Tools/sfc/emboss_seqret/]]   * Web form: [[http://www.ebi.ac.uk/Tools/sfc/emboss_seqret/]]
  * [[.:EMBOSS seqret (REST)|REST service]]   * [[.:EMBOSS seqret (REST)|REST service]]
-  * [[..:emboss|RPC/encoded SOAP service]] (**deprecated**) 
  * [[http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/seqret.html|EMBOSS seqret documentation]]   * [[http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/seqret.html|EMBOSS seqret documentation]]
 +
 +===== Important ====
 +
 +We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 30 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
 +
 +Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/about/terms-of-use|EMBL-EBI's Terms of Use]].
===== Clients ===== ===== Clients =====
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^ Language ^ Download ^ Requirements ^ ^ Language ^ Download ^ Requirements ^
^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/EmbossSeqretCliClient.exe|EmbossSeqretCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/EmbossSeqretClient.cs|EmbossSeqretClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EmbossSeqretCliClient/EmbossSeqretCliClient.cs|EmbossSeqretCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[tutorials:06_Programming:dot_net|.NET tutorial]] for details. | ^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/EmbossSeqretCliClient.exe|EmbossSeqretCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/EmbossSeqretClient.cs|EmbossSeqretClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EmbossSeqretCliClient/EmbossSeqretCliClient.cs|EmbossSeqretCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[tutorials:06_Programming:dot_net|.NET tutorial]] for details. |
-^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/EmbossSeqret_Axis1.jar|EmbossSeqret_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/EmbossSeqretClient.java|EmbossSeqretClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/downloads/java/lib-1.4.zip|lib-1.4.zip]]''. |+^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/EmbossSeqret_Axis1.jar|EmbossSeqret_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/EmbossSeqretClient.java|EmbossSeqretClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/ebiws-lib.zip|ebiws-lib.zip]]''. |
^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/emboss_seqret_soaplite.pl|emboss_seqret_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] | ^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/emboss_seqret_soaplite.pl|emboss_seqret_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] |
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Arguments: Arguments:
-  * ''email'': (**required**) user e-mail address.+  * ''email'': (**required**) user e-mail address. See [[help:faq#why_do_you_need_my_e-mail_address|Why do you need my e-mail address?]]
  * ''title'': job title. Default: "".   * ''title'': job title. Default: "".
  * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.   * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.
 
services/sfc/emboss_seqret_soap.1346832598.txt · Last modified: 2012/09/05 09:09 by hpm
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