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services:sfc:emboss_seqret_rest [2012/09/05 09:01]
hpm (172.22.68.212) created
services:sfc:emboss_seqret_rest [2014/09/05 11:17] (current)
uludag (172.22.10.169) wadl link, was pointing to wwwdev
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====== EMBOSS seqret (REST) ====== ====== EMBOSS seqret (REST) ======
- 
-===== Important ==== 
- 
-Please note that this is a **beta service**, so please avoid using it in production environments. Please report any feedback or issues encountered to us via. [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EMBL-EBI Support]]. 
- 
-We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 25 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime. 
- 
-Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/Information/termsofuse.html|EBI's Terms of Use]]. 
===== Description ===== ===== Description =====
-EMBOSS Seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.+EMBOSS ((Rice P., Longden I. and Bleasby A. (2000)\\  
 +**EMBOSS: The European Molecular Biology Open Software Suite.**\\  
 +Trends Genet. 16(6)276-277\\  
 +PubMed: [[http://europepmc.org/abstract/MED/10827456|10827456]]\\  
 +DOI: [[http://dx.doi.org/10.1016/S0168-9525(00)02024-2|10.1016/S0168-9525(00)02024-2]]\\  
 +)) ((http://emboss.open-bio.org/)) seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.
For more information see: For more information see:
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  * SOAP services:   * SOAP services:
    * [[.:EMBOSS seqret (SOAP)|Document/literal SOAP service]]     * [[.:EMBOSS seqret (SOAP)|Document/literal SOAP service]]
-    * [[..:emboss|RPC/encoded SOAP service]] (**deprecated**) 
  * [[http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/seqret.html|EMBOSS seqret documentation]]   * [[http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/seqret.html|EMBOSS seqret documentation]]
 +
 +===== Important ====
 +
 +We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 30 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
 +
 +Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/about/terms-of-use|EMBL-EBI's Terms of Use]].
===== Clients ===== ===== Clients =====
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For further details of these tool-kits and workflow platforms see our [[:tutorials:00_Contents|Guide to Web Services]]. For further details of these tool-kits and workflow platforms see our [[:tutorials:00_Contents|Guide to Web Services]].
 +
 +===== WADL =====
 +
 +The [[https://wadl.java.net/|WADL]] for the EMBOSS seqret (REST) service: http://www.ebi.ac.uk/Tools/services/rest/emboss_seqret?wadl
===== Resources ===== ===== Resources =====
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^ URL        | http://www.ebi.ac.uk/Tools/services/rest/emboss_seqret/run/ || ^ URL        | http://www.ebi.ac.uk/Tools/services/rest/emboss_seqret/run/ ||
-^ POST        | ''email''        | User e-mail address. |+^ POST        | ''email''        | User e-mail address. See [[help:faq#why_do_you_need_my_e-mail_address|Why do you need my e-mail address?]] |
^            | ''title''        | an optional title for the job. | ^            | ''title''        | an optional title for the job. |
^            | ''stype''        | sequence type | ^            | ''stype''        | sequence type |
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A document containing the result in the requested format. The MIME type of the returned document is set according to the format. A document containing the result in the requested format. The MIME type of the returned document is set according to the format.
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services/sfc/emboss_seqret_rest.1346832108.txt · Last modified: 2012/09/05 09:01 by hpm
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