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services:pfa:ps_scan_soap [2013/03/18 16:20]
wli (172.22.69.114)
services:pfa:ps_scan_soap [2014/01/24 09:38] (current)
hpm (172.22.68.212)
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===== Description ===== ===== Description =====
-PROSITE Scan compares a protein sequence against the signatures in PROSITE. \\+PROSITE Scan (ps_scan) ((Gattiker A, Gasteiger E and Bairoch A (2002)\\ 
 +**ScanProsite: a reference implementation of a PROSITE scanning tool.**\\ 
 +Applied Bioinformatics 1(2):107-108.\\ 
 +PubMed: [[http://europepmc.org/abstract/MED/15130850|15130850]] 
 +)) ((De Castro E, Sigrist CJA, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N. (2006)\\ 
 +**ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.**\\ 
 +Nucleic Acids Res. 34(Web Server issue):W362-5.\\ 
 +PubMed: [[http://europepmc.org/abstract/MED/16845026|16845026]]\\ 
 +DOI: [[http://dx.doi.org/10.1093/nar/gkl124|10.1093/nar/gkl124]] 
 +)) compares a protein sequence against the signatures in PROSITE. \\
For more information see: For more information see:
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===== Important ==== ===== Important ====
-We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 25 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime+We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 30 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
- +
-Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/Information/termsofuse.html|EBI's Terms of Use]].+
 +Service provision happens on a fair-share basis. Overzealous usage of a particular resource will be dealt with in accordance to the [[http://www.ebi.ac.uk/about/terms-of-use|EMBL-EBI's Terms of Use]].
===== Clients ===== ===== Clients =====
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^ Language ^ Download ^ Requirements ^ ^ Language ^ Download ^ Requirements ^
^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/PsScanCliClient.exe|PsScanCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/PsScanClient.cs|PsScanClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/PsScanCliClient/PsScanCliClient.cs|PsScanCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[:tutorials:06_Programming:dot_net|.NET tutorial]] for details. | ^ C# | .NET Executable: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/bin/PsScanCliClient.exe|PsScanCliClient.exe]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/AbstractWsClient.cs|AbstractWsClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/EbiWS/PsScanClient.cs|PsScanClient.cs]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/csharp/EBIWS2_CSharp/PsScanCliClient/PsScanCliClient.cs|PsScanCliClient.cs]]'' | A .NET runtime environment. If building from source development tools are also required. See the [[:tutorials:06_Programming:dot_net|.NET tutorial]] for details. |
-^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/PsScan_Axis1.jar|PsScan_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/PsScanClient.java|PsScanClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/downloads/java/lib-1.4.zip|lib-1.4.zip]]''. |+^ Java | Executable jar: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/PsScan_Axis1.jar|PsScan_Axis1.jar]]''; Source: ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/AbstractWsToolClient.java|AbstractWsToolClient.java]]'', ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/src/uk/ac/ebi/webservices/axis1/PsScanClient.java|PsScanClient.java]]'' | [[http://ws.apache.org/axis/|Axis 1.4]]; All dependencies, including [[http://ws.apache.org/axis/|Axis 1.4]] and [[http://commons.apache.org/cli/|Commons-CLI]], are available in ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/java/jar/ebiws-lib.zip|ebiws-lib.zip]]''. |
^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/ps_scan_soaplite.pl|ps_scan_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] | ^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/download_clients/perl/soaplite/ps_scan_soaplite.pl|ps_scan_soaplite.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] |
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Arguments: Arguments:
-  * ''email'': (**required**) user e-mail address.+  * ''email'': (**required**) user e-mail address. See [[help:faq#why_do_you_need_my_e-mail_address|Why do you need my e-mail address?]]
  * ''title'': job title. Default: "".   * ''title'': job title. Default: "".
  * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.   * ''params'': (**required**) parameters for the tool. These are described by the [[#InputParameters]] data structure.
 
services/pfa/ps_scan_soap.1363623625.txt · Last modified: 2013/03/18 16:20 by wli
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