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T-Coffee (REST)DescriptionT-Coffee is a multiple sequence alignment program. Multiple sequence alignment programs are meant to align a set of sequences previously gathered using other programs such as BLAST or FASTA. The main characteristic of T-Coffee is that it will allow you to combine results obtained with several alignment methods. For instance if you have an alignment coming from ClustalW, an other alignment coming from Dialign, and a structural alignment of some of your sequences, T-Coffee will combine all that information and produce a new multiple sequence having the best agreement with all these methods. By default, T-Coffee will compare all your sequences two by two, producing a global alignment and a series of local alignments (using lalign). The program will then combine all these alignments into a multiple alignment. For more information see:
ClientsSample clients are provided for a number of programming languages. For details of how to use these clients, download the client and run the program without any arguments.
ResourcesparametersList parameter names. Request
Response An XML document containing a list of parameter names. For example: http://www.ebi.ac.uk/Tools/services/rest/tcoffee/parameters/ parameterdetailsGet detailed information about a parameter. Request
Response An XML document providing details about the parameter. For example: http://www.ebi.ac.uk/Tools/services/rest/tcoffee/parameterdetails/matrix. runSubmit a job with the specified parameters. Request
More detailed information about each parameter, including valid values can be obtained using the getParameterDetails(parameterId) operation. Response A plain text document containing the job identifier. statusGet the status of a submitted job. Request
Response A plain text document containing the job status. resulttypesGet available result types for a finished job. Request
Response An XML document detailing the available result types. resultGet the job result of the specified type. Request
Response A document containing the result in the requested format. The MIME type of the returned document is set according to the format. | | ||||||||||||||||||||||||||||||||||||||||||||||