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WSPSISearch Clients

Important

On Monday 28th March 2011 the WSPSISearch service, used by these clients, was decommissioned and replaced by the following services:

The service documentation and clients below are historical and provided solely for reference purposes.

Description

PSI-Search, similar to PSI-BLAST, combines the Smith-Waterman search algorithm with the PSI-BLAST profile construction strategy to find distantly related protein sequences. Searches are done with SSEARCH, and the selected hits are combined with BLASTPGP to build a position specific scoring matrix (PSSM), which is then used for another search with SSEARCH in the next iteration.

For more information about this tool see:

Web Service

For details of the service used by these clients see WSPSISearch.

Perl Client

Install SOAP::Lite

To run the Perl client you need to install SOAP::Lite. SOAP::Lite is a collection of Perl modules which provide a simple and lightweight interface to the Simple Object Access Protocol (SOAP) for both client and server applications. This client requires SOAP::Lite version 0.60.

Get the client

Download the Perl client: psisearch.pl

To get usage information run the program without arguments:

perl psisearch.pl
 
services/archive/sss/wspsisearch_clients.txt · Last modified: 2013/04/23 16:45 by hpm
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