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This shows you the differences between two versions of the page.
services:archive:sss:wspsisearch [2011/03/29 15:01]
hpm (172.22.10.43) created |
services:archive:sss:wspsisearch [2013/04/23 16:45] (current)
hpm (172.22.68.212) |
| - | ====== PSI-Search ====== | + | ====== WSPSISearch ====== |
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| | ===== Important ===== | | ===== Important ===== |
| | PSI-Search, similar to PSI-BLAST, combines the Smith-Waterman search algorithm with the PSI-BLAST profile construction strategy to find distantly related protein sequences. Searches are done with SSEARCH, and the selected hits are combined with BLASTPGP to build a position specific scoring matrix (PSSM), which is then used for another search with SSEARCH in the next iteration. | | PSI-Search, similar to PSI-BLAST, combines the Smith-Waterman search algorithm with the PSI-BLAST profile construction strategy to find distantly related protein sequences. Searches are done with SSEARCH, and the selected hits are combined with BLASTPGP to build a position specific scoring matrix (PSSM), which is then used for another search with SSEARCH in the next iteration. |
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| - | For more information about this tool see: | + | Web service registry entries: |
| | * [[http://www.biocatalogue.org/services/2188|BioCatalogue]] | | * [[http://www.biocatalogue.org/services/2188|BioCatalogue]] |
| | + | * [[http://webservices.seekda.com/providers/ebi.ac.uk/WSPSISearchService|seekda!]] |
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| | ===== Clients ===== | | ===== Clients ===== |
| | ^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/downloads/perl/soaplite/psisearch.pl|psisearch.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] | | | ^ Perl | ''[[http://www.ebi.ac.uk/Tools/webservices/downloads/perl/soaplite/psisearch.pl|psisearch.pl]]'' | [[http://search.cpan.org/perldoc?SOAP::Lite|SOAP::Lite]] | |
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| - | For further details see [[clients:psisearch| PSI-Search Clients]]. | + | For further details see [[.:WSPSISearch Clients]]. |
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| | ===== WSDL ===== | | ===== WSDL ===== |
| | ===== Contact ===== | | ===== Contact ===== |
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| - | If you have any questions or comments, or you plan to use this service as part of a course or for a high number of submissions, please contact us [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EBI Support]]. | + | If you have any questions or comments, or you plan to use this service as part of a course or for a high number of submissions, please contact us [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EMBL-EBI Support]]. |
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