Table of Contents
On Monday 28th March 2011 the WSPSISearch service was decommissioned and replaced by the following services:
The service documentation and clients below are historical and provided solely for reference purposes.
PSI-Search, similar to PSI-BLAST, combines the Smith-Waterman search algorithm with the PSI-BLAST profile construction strategy to find distantly related protein sequences. Searches are done with SSEARCH, and the selected hits are combined with BLASTPGP to build a position specific scoring matrix (PSSM), which is then used for another search with SSEARCH in the next iteration.
Web service registry entries:
Sample clients are provided for a number of programming languages. For details of how to use these clients, download the client and run the program without any arguments.
For further details see WSPSISearch Clients.
Submits a PSI-Search job to the service.
Returns: a string containing the job ID (
Get the status of a job.
Returns: a string indicating the status of the job. Current values are:
Get details of the result types available.
Returns: an array of
Wait until the job has finished and get the specified type of result data.
Returns: a base64 encoded string containing the result data. Depending on the SOAP library and programming language used the result may be returned in decoded form.
Structure containing the input data for the job
A structure containing the parameters required to run the job.
Structure describing a result type. Returned by the
If you have any questions or comments, or you plan to use this service as part of a course or for a high number of submissions, please contact us EMBL-EBI Support.