Table of Contents
On Monday 28th March 2011 the WSBlastpgp service, used by these clients, was decommissioned and replaced by the following services:
The service documentation and clients below are historical and provided solely for reference purposes.
Position Specific Iterative BLAST (PSI-BLAST) performs an iterative sequence similarity search which can detect more distant evolutionary relationships.
Pattern Hit Initiated BLAST (PHI-BLAST) treats multiple occurrences of a defined pattern within the query sequence as independent sequences.
These tools are only available for database protein searches.
For more information on this tool see:
For details of the service used by these clients see WSBlastpgp.
The Microsoft .NET runtime is already installed on most MS Windows systems. The Microsoft .NET runtime is available via Microsoft Update or as a download (see http://msdn.microsoft.com/netframework/).
Download the C# client:
Run without arguments to get a usage summary:
Download and unzip the library files
Download the Java client:
To get usage information run the client without arguments:
java -Djava.ext.dirs=lib -jar WSBlastpgp.jar
To run the Perl client you need to install SOAP::Lite. SOAP::Lite is a collection of Perl modules which provides a simple and lightweight interface to SOAP both on client and server side. This client requires SOAP::Lite version 0.60.
Download the Perl client:
To get usage information run without arguments:
A basic workflow showing how to use WSBlastpgp can be found on myExperiment.