 |
This shows you the differences between two versions of the page.
services:archive:sss:wsblastpgp [2011/03/29 14:33]
hpm (172.22.10.43) created |
services:archive:sss:wsblastpgp [2013/04/23 16:41] (current)
hpm (172.22.68.212) |
| - | ====== PSI-BLAST / PHI-BLAST ====== | + | ====== WSBlastpgp ====== |
| | | | |
| | ===== Important ===== | | ===== Important ===== |
| | - Automatic: the set of hits used to construct the profile is automatically selected based on an E-value threshold. For this mode the search will stop either when the iterations converge (i.e. the same hits are used to build the profile in each iteration) or when a specified maximum number of iterations is reached. | | - Automatic: the set of hits used to construct the profile is automatically selected based on an E-value threshold. For this mode the search will stop either when the iterations converge (i.e. the same hits are used to build the profile in each iteration) or when a specified maximum number of iterations is reached. |
| | | | |
| - | This service provides only the automatic mode. To use the manual mode see the [[services:psiblast|WSPSIBlast]], [[services:sss:psiblast_soap|PSI-BLAST (SOAP)]] or [[services:sss:psiblast_rest|PSI-BLAST (REST)]] services. | + | This service provides only the automatic mode. To use the manual mode see the [[.:WSPSIBlast]], [[:services:sss:psiblast_soap|PSI-BLAST (SOAP)]] or [[:services:sss:psiblast_rest|PSI-BLAST (REST)]] services. |
| | | | |
| | For more information on this tool see: | | For more information on this tool see: |
| - | * EBI Tools: | + | * EMBL-EBI Tools: |
| | * [[http://www.ebi.ac.uk/Tools/blastpgp/|PSI-BLAST/PHI-BLAST]] | | * [[http://www.ebi.ac.uk/Tools/blastpgp/|PSI-BLAST/PHI-BLAST]] |
| | * [[http://www.ebi.ac.uk/Tools/blastpgp/help.html|PSI-BLAST/PHI-BLAST Help]] | | * [[http://www.ebi.ac.uk/Tools/blastpgp/help.html|PSI-BLAST/PHI-BLAST Help]] |
| | * [[http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs|NCBI BLAST Help]] | | * [[http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs|NCBI BLAST Help]] |
| | * [[http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/guide.html|BLAST Guide]] | | * [[http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/guide.html|BLAST Guide]] |
| | + | |
| | + | Web service registry entries: |
| | * [[http://www.biocatalogue.org/services/2048|BioCatalogue]] | | * [[http://www.biocatalogue.org/services/2048|BioCatalogue]] |
| | + | * [[http://webservices.seekda.com/providers/ebi.ac.uk/WSBlastpgpService|seekda!]] |
| | | | |
| | ===== Clients ===== | | ===== Clients ===== |
| | ^ Taverna 1.x | [[http://www.myexperiment.org/workflows/208|EBI_blastpgp_PSI-BLAST]] | [[http://www.taverna.org.uk/|Taverna]] | | | ^ Taverna 1.x | [[http://www.myexperiment.org/workflows/208|EBI_blastpgp_PSI-BLAST]] | [[http://www.taverna.org.uk/|Taverna]] | |
| | | | |
| - | For further details see [[clients:blastpgp|PSI-BLAST/PHI-BLAST Clients]]. | + | For further details see [[WSBlastpgp Clients]]. |
| | + | |
| | + | ==== Workflows ==== |
| | + | |
| | + | In addition to these sample clients users have submitted workflows using these services to the [[http://www.myexperiment.org/|myExperiment]] workflow repository. See [[http://www.myexperiment.org/workflows?filter=WSDL_ENDPOINT%28"http%3A%2F%2Fwww.ebi.ac.uk%2FTools%2Fwebservices%2Fwsdl%2FWSBlastpgp.wsdl"%29|workflows using the WSBlastpgp Web Service]] for a list. |
| | | | |
| | ===== WSDL ===== | | ===== WSDL ===== |
| | ===== Contact ===== | | ===== Contact ===== |
| | | | |
| - | If you have any questions or comments, or you plan to use this service as part of a course or for a high number of submissions, please contact us [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EBI Support]]. | + | If you have any questions or comments, or you plan to use this service as part of a course or for a high number of submissions, please contact us [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EMBL-EBI Support]]. |
|
