Table of Contents
On Monday 28th March 2011 the WSInterProScan service, used by these clients, was decommissioned and replaced by the following services:
The service documentation and clients below are historical and provided solely for reference purposes.
InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource with look up of corresponding InterPro and GO annotation. This service allows you to query your protein sequence against InterPro.
For more information about this tool see:
We kindly ask all users of SOAP Web Services to submit jobs in batches of up to 25 sequences at a time and to not submit more until the results and processing has completed for these. This should enable the users as well as the EBI maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
Due to resource limitations the InterProScan service no longer accepts nucleotide sequence submissions.
To process nucleotide sequences using InterProScan:
1. Translate your nucleotide sequence
2. Filter ORFs by sequence length.
3. Significant hits from sequence similarity searches.
Note: the standalone version of InterProScan can perform the translation and ORF length filtering as part of the submission and is recommended if you need to perform large numbers of analysis and have access to the required resources. See InterProScan Readme for details.
For details of the service used by these clients see WSInterProScan.
The Microsoft .NET runtime is already installed on most MS Windows systems. The Microsoft .NET runtime is available via Microsoft Update or as a download (see http://msdn.microsoft.com/netframework/).
Download the C# client:
Run without arguments to get a usage summary:
Download and unzip the library files
Download the Java client:
To get usage information run the client without arguments:
java -Djava.ext.dirs=lib -jar WSInterProScan.jar
To run the Perl client you need to install SOAP::Lite. SOAP::Lite is a collection of Perl modules which provides a simple and lightweight interface to SOAP both on client and server side. This client requires SOAP::Lite version 0.60.
Download the Perl client:
To get usage information run without arguments:
A number of other example clients are available in a range of languages: