Table of Contents
The InterProScan 4.x web services were retired on Wednesday 9th April 2014.
With the release of InterPro 44.0 and the accompanying release of InterProScan 5 (5-44.0), InterProScan 4.x was frozen at the last release (InterProScan 4.8 with InterPro 43.1). All users are encouraged to migrate to the InterProScan 5 Web Services:
Note: this service uses InterProScan 4.x, for details about the currently available versions of InterProScan please see: ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/index.html.
For more information see:
Web service registry entries:
We kindly ask all users of EMBL-EBI Web Services to submit tool jobs in batches of up to 30 at a time and to not submit more until the results and processing has completed for these. This enables users as well as the service maintainers to deal more easily with local and remote network outages as well as scheduled or unscheduled downtime.
If you are planning on systematically processing many sequences using this service please see InterProScan Web Service FAQ.
To process nucleotide sequences using InterProScan 4.x:
Note: the standalone version of InterProScan 4.x can perform the translation and ORF length filtering as part of the submission and is recommended if you need to perform large numbers of analysis and have access to the required resources. See InterProScan 4.x Readme for details.
Sample clients are provided for a number of programming languages. For details of how to use these clients, download the client and run the program without any arguments.
For further details of these tool-kits and workflow platforms see our Guide to Web Services.
In addition to these sample clients users have submitted workflows using these services to the myExperiment workflow repository. See workflows using the InterProScan (SOAP) Web Service for a list.
The WSDL for the InterProScan SOAP service: http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl
The Kissinger Research Group, University of Georgia provide a SAWSDL for the InterProScan (SOAP) web service, which is annotated using OBIws: http://mango.ctegd.uga.edu/jkissingLab/SWS/Wsannotation/resources/iprscan.sawsdl
Get a list of the parameter names.
Returns: a list of strings giving the names of the parameters.
Get details of a specific parameter.
Returns: a wsParameterDetails describing the parameter and its values.
Submit a job to the service.
Returns: a string containing the job identifier (
Get the status of a submitted job.
Returns: a string containing the status.
The values for the status are:
Further details can be found in Synchronous and Asynchronous Access: JDispatcher.
Get the available result types for a finished job.
Returns: a list of wsResultType data structures describing the available result types.
Get the result of a job of the specified type.
Returns: the result data for the specified type, base64 encoded. Depending on the SOAP library and programming language used the result may be returned in decoded form. For some result types (e.g. images) this will be binary data rather than a text string.
The input parameters for the job:
More detailed information about each parameter, including valid values can be obtained using the getParameterDetails(parameterId) operation.
Descriptive information about a tool parameter. Returned by getParameterDetails(parameterId).
Description of a tool parameter value. Used in wsParameterDetails.
Properties of a tool parameter value. Used in wsParameterValue.
Additional parameters passed when requesting a result. See getResult(jobId, type, parameters).
Description of a result type. Returned by getResultTypes(jobId).
1) Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R. and Lopez R. (2005)
InterProScan: protein domains identifier.
Nucleic Acids Res. 33:W116-20