Registry

Total: 7,009,864 Interactions from 22 PSICQUIC Services, of which 0 are currently down.

Filter:

Name Status Interactions Version URLs Description Restricted Tags
BioGrid
Active
1,513,281
1.3.14
SOAP: http://tyersrest.tyerslab.com:8805/psicquic/webservices/psicquic
REST: http://tyersrest.tyerslab.com:8805/psicquic/webservices/current/search/

REST example

NO
protein-protein
internally-curated
rapid curation
spoke expansion
evidence  

bhf-ucl
Active
4,019
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/current/search/

REST example

NO
protein-protein
smallmolecule-protein
nucleicacid-protein
internally-curated
imex curation
mimix curation
spoke expansion
evidence  

ChEMBL
Active
628,504
1.2.7
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/chembl/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/chembl/webservices/current/search/

REST example

NO
smallmolecule-protein
internally-curated
mimix curation
spoke expansion
evidence  

HPIDb
Active
5,046
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/current/search/

REST example

NO
protein-protein
internally-curated
mimix curation
spoke expansion
evidence  

InnateDB
Active
0
1.3.9
SOAP: http://psicquic.curated.innatedb.com/webservices/psicquic
REST: http://psicquic.curated.innatedb.com/webservices/current/search/

REST example
This service queries all interactions that have been manually annotated to MIMIx standards by the InnateDB curation team.
NO
protein-protein
internally-curated
spoke expansion
mimix curation
evidence
nucleicacid-protein  

InnateDB-All
Active
578,350
1.3.9
SOAP: http://psicquic.all.innatedb.com/webservices/psicquic
REST: http://psicquic.all.innatedb.com/webservices/current/search/

REST example
This service queries all interactions in InnateDB including both interactions curated by the InnateDB curation team and those integrated from other databases.
NO
protein-protein
internally-curated
spoke expansion
mimix curation
evidence
nucleicacid-protein  

IntAct
Active
659,634
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/current/search/

REST example
Detailed curation of experimentally verified interaction evidences extracted from the literature or directly submitted by authors as part of the publication process.
NO
protein-protein
smallmolecule-protein
nucleicacid-protein
internally-curated
imported
imex curation
mimix curation
spoke expansion
evidence  

IMEx
Active
683,995
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/imex/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/imex/webservices/current/search/

REST example
IMEx contains experimentally verified protein interaction records annotated by members of the IMEx Consortium (www.imexconsortium.org) to a consistant, detailed curation standard.
NO
protein-protein
smallmolecule-protein
nucleicacid-protein
internally-curated
imex curation
spoke expansion
evidence  

mentha
Active
1,272,096
1.3.13
SOAP: http://mentha.uniroma2.it:9090/psicquic/webservices/psicquic
REST: http://mentha.uniroma2.it:9090/psicquic/webservices/current/search/

REST example

NO
protein-protein
imported
clustered
spoke expansion  

MPIDB
Active
1,751
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/mpidb/webservices/current/search/

REST example

NO
protein-protein
internally-curated
imex curation
spoke expansion
evidence  

MatrixDB
Active
128,545
1.3.14
SOAP: http://matrixdb.univ-lyon1.fr:8080/psicquic/webservices
REST: http://matrixdb.univ-lyon1.fr:8080/psicquic/webservices/current/search/

REST example
MatrixDB focuses on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides. This service queries experimentally-supported interactions curated from the literature by the MatrixDB curation team.
NO
protein-protein
smallmolecule-protein
internally-curated
imex curation
mimix curation
spoke expansion
evidence  

MINT
Active
123,892
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/

REST example

NO
protein-protein
internally-curated
imex curation
mimix curation
spoke expansion
evidence  

Reactome
Active
141,996
1.2.7
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome/webservices/current/search/

REST example

NO
protein-protein
predicted
evidence  

Reactome-FIs
Active
209,988
1.2.7
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome-fi/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/reactome-fi/webservices/current/search/

REST example

NO
protein-protein
predicted
imported
clustered  

EBI-GOA-miRNA
Active
2,733
1.3.13
SOAP: https://www.ebi.ac.uk/QuickGO/psicquic-rna/webservices/psicquic
REST: https://www.ebi.ac.uk/QuickGO/psicquic-rna/webservices/current/search/

REST example

NO
nucleicacid-gene
rapid curation
experimentally-observed  

I2D
Active
817,915
1.1.6
SOAP: http://ophid.utoronto.ca/psicquic-ws/webservices/psicquic
REST: http://ophid.utoronto.ca/psicquic-ws/webservices/current/search/

REST example

NO
protein-protein
internally-curated
evidence  

UniProt
Active
16,534
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/uniprot/webservices/current/search/

REST example

NO
protein-protein
nucleicacid-protein
smallmolecule-protein
internally-curated
imex curation
evidence
spoke expansion
mimix curation  

MBInfo
Active
638
1.3.14
SOAP: http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/psicquic
REST: http://www.ebi.ac.uk/Tools/webservices/psicquic/mbinfo/webservices/current/search/

REST example

NO
protein-protein
nucleicacid-protein
smallmolecule-protein
internally-curated
imex curation
evidence
spoke expansion  

VirHostNet
Active
28,814
1.3.14
SOAP: http://virhostnet.prabi.fr:9090/psicquic/webservices/psicquic
REST: http://virhostnet.prabi.fr:9090/psicquic/webservices/current/search/

REST example

NO
protein-protein
evidence
internally-curated
clustered
rapid curation
experimentally-observed
imported
spoke expansion  

BAR
Active
115,325
1.3.14
SOAP: http://bar.utoronto.ca:9090/psicquic/webservices/psicquic
REST: http://bar.utoronto.ca:9090/psicquic/webservices/current/search/

REST example

NO
protein-protein
imported
spoke expansion
predicted
internally-curated  

EBI-GOA-nonIntAct
Active
68,311
1.3.13
SOAP: https://www.ebi.ac.uk/QuickGO/psicquic/webservices/psicquic
REST: https://www.ebi.ac.uk/QuickGO/psicquic/webservices/current/search/

REST example

NO
protein-protein
nucleicacid-protein
rapid curation
experimentally-observed  

ZINC
Active
8,497
1.3.14
SOAP: http://psicquic.docking.org/psicquic/webservices/psicquic
REST: http://psicquic.docking.org/psicquic/webservices/current/search/

REST example
ZINC is a database of commercially available compounds for virtual screening. It uses publicly available bioactivity data to allow investigators to access chemical tools for biology.
NO
smallmolecule-protein
internally-curated
experimentally-observed  

About PSICQUIC Registry

The PSICQUIC Registry contains the list of PSICQUIC services available, their tags, and their current status. The registry also shows the number of total binary interactions that each resource has made available through PSICQUIC. For more information about PSICQUIC, please visit the Google Project documentation.