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help:matrix [2008/11/11 10:05]
hpm (172.22.8.184) Add matrices for MPSrch and EMBOSS. |
help:matrix [2012/11/30 15:22] (current)
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| | | | PAM120 | P120 | | | | | PAM120 | P120 | |
| | | | PAM250 | P250 | | | | | PAM250 | P250 | |
| - | | MPSrch | //PAM matrices via the PAM option// | **PAM100** | | |
| - | | | BLOSUM50 | blosum50 | | |
| - | | | BLOSUM62 | blosum62 | | |
| - | | | BLOSUM70 | blosum70 | | |
| - | | | BLOSUM100 | blosum100 | | |
| | | NCBI BLAST | BLOSUM45 | blosum45 | | | | NCBI BLAST | BLOSUM45 | blosum45 | |
| | | | BLOSUM50 | blosum50 | | | | | BLOSUM50 | blosum50 | |
| | | | PAM30 | pam30 | | | | | PAM30 | pam30 | |
| | | | PAM70 | pam70 | | | | | PAM70 | pam70 | |
| - | | | PAM250 | pam250 | | |
| - | | ScanPS | BLOSUM35 | blosum35 | | |
| - | | | BLOSUM50 | **blosum50** | | |
| - | | | BLOSUM62 | blosum62 | | |
| - | | | PAM30 | pam30 | | |
| - | | | PAM100 | pam100 | | |
| | | | PAM250 | pam250 | | | | | PAM250 | pam250 | |
| | | WU-BLAST | BLOSUM30 | blosum30 | | | | WU-BLAST | BLOSUM30 | blosum30 | |
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