help:databases [2009/12/14 10:49]
127.0.0.1 external edit |
help:databases [2012/11/30 15:22] (current)
|
| | ===== Dbfetch ===== | | ===== Dbfetch ===== |
| | | | |
| - | These are the databases available to the WSDbfetch web service: | + | The [[:services:dbfetch|WSDbfetch]] service provides meta-information methods to get details of the databases, formats and styles available: |
| | + | - ''getSupportedDBs()'' operation |
| | + | - ''getSupportedFormats()'' operation |
| | + | - ''getSupportedStyles()'' operation |
| | + | - ''getDbFormats(db)'' operation |
| | + | - ''getFormatStyles(db, format)'' operation |
| | | | |
| - | ^ Database ^ Description ^ dbfetch name ^ | + | More detailed information about the available databases can be found in the [[http://wwww.ebi.ac.uk/cgi-bin/dbfetch|dbfetch]] help. |
| - | | EMBL | EMBL Nucleotide Sequence Database, Europe's primary nucleotide sequence resource. The main sources of the DNA and RNA sequences in the database are submissions from individual researchers, genome sequencing projects and patent applications. | ''embl'' | | + | |
| - | | EMBL CDS | EMBLCDS is a database of nucleotide sequences of the CDS (coding sequence) features, as annotated in EMBL database. EMBLCDS record contains the nucleotide sequence of the CDS region, accompanying annotation from the parent nucleotide entry and the additional automatically generated annotation. | ''emblcds'' | | + | |
| - | | EMBL Sequence Version Archive | The EMBL Sequence Version Archive is a repository of all entries which have ever appeared in the EMBL Nucleotide Sequence Database. | ''emblsva'' | | + | |
| - | | EMBL Contig | The EMBLCON database division represents complete genomes and other long sequences constructed from segment entries. | ''emblcon'' | | + | |
| - | | EMBL Annotated cons | This database contains Annotated EMBLCON entries | ''emblann'' | | + | |
| - | | UniProt Knowledgebase | The UniProt Knowledgebase (UniProtKB) is the central access point for extensive curated protein information, including function, classification, and cross-references. Search UniProtKB to retrieve "everything that is known" about a particular sequence. | ''uniprot'' | | + | |
| - | | Genome Reviews | The Genome Reviews Database consists of curated versions of complete genome entries from the EMBL/GenBank/DDBJ nucleotide sequence database. | ''genomereviews'' | | + | |
| - | | HGVBASE | The Human Genic Bi-Allelic Sequences Database is an attempt to summarize all known sequence variations in the human genome and to facilitate research into how genotypes affect common diseases, drug responses, and other complex phenotypes. | ''hgvbase'' | | + | |
| - | | InterPro | The InterPro database (Integrated Resource of Protein Domains and Functional Sites) is an integrated documentation resource for protein families, domains and functional sites. It was developed initially as a means of rationalising the complementary efforts of the PROSITE, PRINTS, Pfam and ProDom database projects, but now also includes the SMART, TIGRFAMs, PIR SuperFamilies and most recently SUPERFAMILY databases. | ''interpro'' | | + | |
| - | | UniProt Clusters | The UniProt Reference Clusters (UniRef) databases combine closely related sequences into a single record to speed searches. There are three different non-redundant databases with different sequence identity cut-offs. In UniRef100, UniRef90 and UniRef50 databases no pair of sequences in the representative set has >100%, >90% or >50% mutual sequence identity. The three UniRef databases allow the user to choose between a fast search and a truly comprehensive one. | ''uniref50'', ''uniref90'', ''uniref100'' | | + | |
| - | | UniProt Archive | The UniProt Archive (UniParc) contains available protein sequences collected from many different sources. The sequence data are archived to facilitate examination of changes to sequence data. Search UniParc if you want to examine the "history" of a particular sequence. | ''uniparc'' | | + | |
| - | | UniProtKB Version Archive | The UniProtKB Sequence/Annotation Version Archive (UniSave) is a repository of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL entry versions. | ''unisave'' | | + | |
| - | | International Protein Index | The International Protein Index (IPI) provides non-redundant proteome sets for a selection of higher eukaryotes, e.g. Arabidopsis, Chicken, Mouse, Human, etc. Cross-references are provided to the various source databases. | ''ipi'' | | + | |
| - | | Protein Structure Sequences | Protein sequences from structures described in the Brookhaven Protein Data Bank (PDB) | ''pdb'' | | + | |
| - | | EPO Patent Protein Sequences | Protein sequences appearing in patents from the European Patent Office (EPO) | ''epo_prt'' | | + | |
| - | | JPO Patent Protein Sequences | Protein sequences appearing in patents from the Japanese Patent Office (JPO) | ''jpo_prt'' | | + | |
| - | | KIPO Patent Protein Sequences | Protein sequences appearing in patents from the Korean Intellectual Property Office (KIPO) | ''kipo_prt'' | | + | |
| - | | USPTO Patent Protein Sequences | Protein sequences appearing in patents from the United States Patent and Trademark Office (USPTO) | ''uspto_prt'' | | + | |
| - | | Medline | MEDLINE contains bibliographic citations and author abstracts from more than 4,000 biomedical journals published in the United States and 70 other countries. The files contains over 11 million citations dating back to the mid-1960's, updated weekly. | ''medline'' | | + | |
| - | | RefSeq Genome | The NCBI Reference Sequence project (RefSeq) will provide reference sequence standards for the naturally occurring molecules of the central dogma, from chromosomes to mRNAs to proteins. | ''refseq'' | | + | |
| - | | RefSeq Proteome | The NCBI Reference Sequence project (RefSeq) will provide reference sequence standards for the naturally occurring molecules of the central dogma, from chromosomes to mRNAs to proteins. | ''refseqp'' | | + | |
| | | | |
| | ===== Similarity & Homology Search Databases ===== | | ===== Similarity & Homology Search Databases ===== |
| | | | |
| - | ==== Protein databases ==== | + | The sequence similarity search services implement meta-information methods to get the details of the available databases: |
| | | | |
| - | ^ DB Name ^ Description ^ Tools ^ | + | * FASTA |
| - | | ''uniprot'' | UniProt Knowledgebase | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | - [[:services:sss:FASTA (REST)]]: ''parameterdetails'' resource. |
| - | | ''swissprot'' | UniProtKB/Swiss-Prot | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | - [[:services:sss:FASTA (SOAP)]]: ''getParameterDetails(parameterId)'' operation. |
| - | | ''uniref100'' | UniProt Clusters 100% | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | - [[:services:fasta|WSFasta]]: ''getDatabases()'' operation. |
| - | | ''uniref90'' | UniProt Clusters 90% | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | * NCBI BLAST |
| - | | ''uniref50'' | UniProt Clusters 50% | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | - [[:services:sss:NCBI BLAST (REST)]]: ''parameterdetails'' resource. |
| - | | ''uniparc'' | UniProt Archive | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | - [[:services:sss:NCBI BLAST (SOAP)]]: ''getParameterDetails(parameterId)'' operation. |
| - | | ''ipi'' | International Protein Index | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | * PSI-BLAST |
| - | | ''pdb'' | Protein Structure Sequences | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | - [[:services:sss:psiblast_rest|PSI-BLAST (REST)]]: ''parameterdetails'' resource. |
| - | | ''sgt'' | Structural Genomics Targets | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch, ScanPS | | + | - [[:services:sss:psiblast_soap|PSI-BLAST (SOAP)]]: ''getParameterDetails(parameterId)'' operation. |
| - | | ''intact'' | IntAct | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA | | + | * PSI-Search |
| - | | ''imgthlap'' | IMGT/HLA | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | - [[:services:sss:psisearch_rest|PSI-Search (REST)]]: ''parameterdetails'' resource. |
| - | | ''epop'' | EPO Patent Protein Sequences | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | - [[:services:sss:psisearch_soap|PSI-Search (SOAP)]]: ''getParameterDetails(parameterId)'' operation. |
| - | | ''jpop'' | JPO Patent Protein Sequences | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | * WU-BLAST |
| - | | ''kpop'' | KIPO Patent Protein Sequences | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | - [[:services:sss:wu_blast_rest|WU-BLAST (REST)]]: ''parameterdetails'' resource. |
| - | | ''uspop'' | USPTO Patent Protein Sequences | NCBI BLAST, PSI-BLAST, PHI-BLAST, WU-BLAST, FASTA, MPSrch | | + | - [[:services:sss:wu_blast_soap|WU-BLAST (SOAP)]]: ''getParameterDetails(parameterId)'' operation. |
| | + | - [[:services:wublast|WSWUBlast]]: ''getDatabases()'' operation. |
| | | | |
| - | ==== Nucleotide databases ==== | |
| - | | |
| - | These are the nucleotide databases you can use with our homology searches web services: | |
| - | | |
| - | ^ DB Name ^ Description ^ Tools ^ | |
| - | | ''embl'' | EMBL Database | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel'' | EMBL Release | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''emnew'' | EMBL Updates | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''emcds'' | EMBL Coding Sequence | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_env'' | EMBL Environmental | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_env'' | EMBL EST Environmental | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_env'' | EMBL GSS Environmental | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_env'' | EMBL HTG Environmental | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_env'' | EMBL Patent Environmental | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_env'' | EMBL Standard Environmental | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_fun'' | EMBL Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_fun'' | EMBL EST Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_fun'' | EMBL GSS Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_fun'' | EMBL HTC Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_fun'' | EMBL HTG Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_fun'' | EMBL Patent Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_fun'' | EMBL Standard Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_fun'' | EMBL STS Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_fun'' | EMBL TPA Fungi | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_hum'' | EMBL Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_hum'' | EMBL EST Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_hum'' | EMBL GSS Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_hum'' | EMBL HTC Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_hum'' | EMBL HTG Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_hum'' | EMBL Patent Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_hum'' | EMBL Standard Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_hum'' | EMBL STS Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_hum'' | EMBL TPA Human | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_inv'' | EMBL Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_inv'' | EMBL EST Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_inv'' | EMBL GSS Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_inv'' | EMBL HTC Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_inv'' | EMBL HTG Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_inv'' | EMBL Patent Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_inv'' | EMBL Standard Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_inv'' | EMBL STS Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_inv'' | EMBL TPA Invertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_mam'' | EMBL Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_mam'' | EMBL EST Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_mam'' | EMBL GSS Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_mam'' | EMBL HTC Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_mam'' | EMBL HTG Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_mam'' | EMBL Patent Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_mam'' | EMBL Standard Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_mam'' | EMBL STS Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_mam'' | EMBL TPA Mammal | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_mus'' | EMBL Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_mus'' | EMBL EST Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_mus'' | EMBL GSS Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_mus'' | EMBL HTC Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_mus'' | EMBL HTG Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_mus'' | EMBL Patent Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_mus'' | EMBL Standard Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_mus'' | EMBL STS Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_mus'' | EMBL TPA Mouse | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_phg'' | EMBL Phage | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_phg'' | EMBL GSS Phage | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_phg'' | EMBL HTG Phage | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_phg'' | EMBL Patent Phage | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_phg'' | EMBL Standard Phage | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_phg'' | EMBL TPA Phage | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pln'' | EMBL Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_pln'' | EMBL EST Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_pln'' | EMBL GSS Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_pln'' | EMBL HTC Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_pln'' | EMBL HTG Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_pln'' | EMBL Patent Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_pln'' | EMBL Standard Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_pln'' | EMBL STS Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_pln'' | EMBL TPA Plant | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pro'' | EMBL Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_pro'' | EMBL EST Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_pro'' | EMBL GSS Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_pro'' | EMBL HTC Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_pro'' | EMBL HTG Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_pro'' | EMBL Patent Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_pro'' | EMBL Standard Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_pro'' | EMBL STS Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_pro'' | EMBL TPA Prokaryote | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_rod'' | EMBL Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_rod'' | EMBL EST Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_rod'' | EMBL GSS Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_rod'' | EMBL HTC Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_rod'' | EMBL HTG Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_rod'' | EMBL Patent Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_rod'' | EMBL Standard Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_rod'' | EMBL STS Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_rod'' | EMBL TPA Rodent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_syn'' | EMBL Synthetic | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_syn'' | EMBL Patent Synthetic | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_syn'' | EMBL Standard Synthetic | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_syn'' | EMBL TPA Synthetic | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tgn'' | EMBL Transgenic | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_tgn'' | EMBL Standard Transgenic | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_unc'' | EMBL Unclassified | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_unc'' | EMBL Patent Unclassified | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_unc'' | EMBL Standard Unclassified | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_vrl'' | EMBL Viral | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_vrl'' | EMBL GSS Viral | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_vrl'' | EMBL HTG Viral | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_vrl'' | EMBL Patent Viral | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_vrl'' | EMBL Standard Viral | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_vrl'' | EMBL TPA Viral | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_vrt'' | EMBL Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est_vrt'' | EMBL EST Vertebrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss_vrt'' | EMBL GSS Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc_vrt'' | EMBL HTC Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg_vrt'' | EMBL HTG Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat_vrt'' | EMBL Patent Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std_vrt'' | EMBL Standard Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts_vrt'' | EMBL STS Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa_vrt'' | EMBL TPA Vertibrate | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_est'' | EMBL Expressed Sequence Tag | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_gss'' | EMBL Genome Survey Sequence | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htc'' | EMBL High Throughput cDNA | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_htg'' | EMBL High Throughput Genome | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_pat'' | EMBL Patent | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_std'' | EMBL Standard | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_sts'' | EMBL Sequence Tagged Site | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''em_rel_tpa'' | EMBL Third Party Annotation | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''emall'' | EMBL Release and Updates | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''evec'' | EMBL Vectors | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''imgtligm'' | IMGT/LIGM-DB | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | ''imgthla'' | IMGT/HLA | NCBI BLAST, WU-BLAST, FASTA | | |
| - | | |
| - | ==== Parasite databases ==== | |
| - | | |
| - | These are the nucleotide databases you can use with our WU-BLAST web service: | |
| - | | |
| - | ^ DB Name ^ Description ^ Tools ^ | |
| - | | ''nem'' | Nematoda | WU-BLAST | | |
| - | | ''fil'' | Filarial | WU-BLAST | | |
| - | | ''brugia'' | B.malayi | WU-BLAST | | |
| - | | ''oncv'' | O.volvulus | WU-BLAST | | |
| - | | ''apicom'' | Apicomplexa | WU-BLAST | | |
| - | | ''plas'' | Plasmodium | WU-BLAST | | |
| - | | ''plasf'' | P.falciparum | WU-BLAST | | |
| - | | ''toxo'' | T.gondii | WU-BLAST | | |
| - | | ''crypto'' | C.parvum | WU-BLAST | | |
| - | | ''eimeria'' | Eimeria | WU-BLAST | | |
| - | | ''kineto'' | Kinetoplastids | WU-BLAST | | |
| - | | ''schisto'' | Schistosoma | WU-BLAST | | |
| - | | ''schunq'' | Schisto unique | WU-BLAST | | |
| - | | ''mansoni'' | S.mansoni | WU-BLAST | | |
| - | | ''jap'' | S.japonicum | WU-BLAST | | |
| - | | ''cercunq'' | Cerc unique | WU-BLAST | | |
| - | | ''japunq'' | Jap unique | WU-BLAST | | |
| - | | ''entamoeba'' | entamoeba | WU-BLAST | | |
| - | | ''bgESTnr'' | bgESTnr | WU-BLAST | | |
| - | | |
| - | ==== ASD databases ==== | |
| - | | |
| - | The [[http://www.ebi.ac.uk/asd/|Alternative Splicing Database]] (ASD) is a database of alternatively spliced exons. | |
| - | | |
| - | Note: the [[http://www.ebi.ac.uk/asd/|Alternative Splicing Database]] (ASD) and the [[http://www.ebi.ac.uk/atd/|Alternative Transcript Diversity database]] (ATD) have been merged into a single resource: the [[http://www.ebi.ac.uk/astd/|Alternative Splicing and Transcript Diversity database]] (ASTD). You may wish to use the [[#astd_databases|ASTD databases]] instead of these. | |
| - | | |
| - | ^ DB Name ^ Description ^ Tools ^ | |
| - | | ''altsgen'' | Splice Genes | WU-BLAST | | |
| - | | ''altsiso'' | Splice Patterns | WU-BLAST | | |
| - | | ''aedb'' | AEDB exons | WU-BLAST | | |
| - | | ''apdb'' | Peptides | WU-BLAST | | |
| - | | |
| - | ==== ASTD databases ==== | |
| - | | |
| - | The [[http://www.ebi.ac.uk/astd/|Alternative Splicing and Transcript Diversity database]] (ASTD) merges the [[http://www.ebi.ac.uk/asd/|Alternative Splicing Database]] (ASD) and [[http://www.ebi.ac.uk/atd/|Alternative Transcript Diversity database]] (ATD) into a single resource. | |
| - | | |
| - | ^ DB Name ^ Description ^ Tools ^ | |
| - | | ''astdi'' | ASTD Isoforms | WU-BLAST | | |
| - | | ''astdg'' | ASTD Gene | WU-BLAST | | |
| - | | ''astdp'' | ASTD Peptides | WU-BLAST | | |
| - | | |
| - | ==== LGIC databases ==== | |
| - | | |
| - | [[http://www.ebi.ac.uk/compneur-srv/LGICdb/|Ligand Gated Ion Channel Database]]. | |
| - | | |
| - | ^ DB Name ^ Description ^ Tools ^ | |
| - | | ''lgicp'' | Ligand Gated Ion Channel Database Protein | FASTA | | |
| - | | ''lgicn'' | Ligand Gated Ion Channel Database Nucleotide | FASTA | | |
| - | | |
| - | ==== Fasta full proteomes ==== | |
| - | | |
| - | WSFasta provides sequence similarity searching against complete proteomes databases. | |
| - | | |
| - | ^ dbname ^ Description ^ Tools ^ | |
| - | |22426.A_gambiae-p|Anopheles gambiae| Fasta| | |
| - | |3.A_thaliana-p|Arabidopsis thaliana| Fasta| | |
| - | |982.A_gossypii-p|Ashbya gossypii| Fasta| | |
| - | |22118.A_fumigatus-p|Aspergillus fumigatus| Fasta| | |
| - | |23077.A_oryzae-p|Aspergillus oryzae| Fasta| | |
| - | |20721.B_rerio-p|Brachydanio rerio| Fasta| | |
| - | |21633.C_briggsae-p|Caenorhabditis briggsae| Fasta| | |
| - | |9.C_elegans-p|Caenorhabditis elegans| Fasta| | |
| - | |19665.C_glabrata-p|Candida glabrata| Fasta| | |
| - | |20846.C_neoformans_JEC21-p|Cryptococcus neoformans JEC21| Fasta| | |
| - | |21380.C_neoformans-p|Cryptococcus neoformans var. neoformans B-3501A| Fasta| | |
| - | |23132.C_hominis-p|Cryptosporidium hominis| Fasta| | |
| - | |20018.D_hansenii-p|Debaryomyces hansenii| Fasta| | |
| - | |21395.D_discoideum-p|Dictyostelium discoideum| Fasta| | |
| - | |17.D_melanogaster-p|Drosophila melanogaster| Fasta| | |
| - | |25396.D_pseudoobscura-p|Drosophila pseudoobscura| Fasta| | |
| - | |79.E_cuniculi-p|Encephalitozoon cuniculi| Fasta| | |
| - | |21457.G_gallus-p|Gallus gallus| Fasta| | |
| - | |22027.G_zeae-p|Gibberella zeae| Fasta| | |
| - | |55.G_theta-p|Guillardia theta| Fasta| | |
| - | |25.H_sapiens-p|Homo sapiens| Fasta| | |
| - | |20004.K_lactis-p|Kluyveromyces lactis| Fasta| | |
| - | |21780.L_major-p|Leishmania major| Fasta| | |
| - | |59.M_musculus-p|Mus musculus| Fasta| | |
| - | |20026.P_tetraurelia-p|Paramecium tetraurelia| Fasta| | |
| - | |493.P_falciparum_3D7-p|Plasmodium falciparum 3D7| Fasta| | |
| - | |21631.P_yoelii-p|Plasmodium yoelii yoelii| Fasta| | |
| - | |122.R_norvegicus-p|Rattus norvegicus| Fasta| | |
| - | |40.S_cerevisiae-p|Saccharomyces cerevisiae| Fasta| | |
| - | |78.S_pombe-p|Schizosaccharomyces pombe| Fasta| | |
| - | |22388.T_nigroviridis-p|Tetraodon nigroviridis| Fasta| | |
| - | |23057.T_annulata-p|Theileria annulata| Fasta| | |
| - | |23052.T_parva-p|Theileria parva| Fasta| | |
| - | |23182.T_gondii-p|Toxoplasma gondii| Fasta| | |
| - | |20011.Y_lipolytica-p|Yarrowia lipolytica| Fasta| | |
| - | |23160.A_bacterium-p|Acidobacteria bacterium| Fasta| | |
| - | |19622.Acinetobacter_sp-p|Acinetobacter sp.| Fasta| | |
| - | |62.A_tumefaciens_Cereon-p|Agrobacterium tumefaciens Cereon| Fasta| | |
| - | |73.A_tumefaciens_Dupont-p|Agrobacterium tumefaciens Dupont| Fasta| | |
| - | |25433.A_borkumensis-p|Alcanivorax borkumensis| Fasta| | |
| - | |71.Anabaena_sp-p|Anabaena sp.| Fasta| | |
| - | |22186.A_variabilis-p|Anabaena variabilis| Fasta| | |
| - | |22582.A_dehalogenans-p|Anaeromyxobacter dehalogenans| Fasta| | |
| - | |20704.A_marginale-p|Anaplasma marginale| Fasta| | |
| - | |22967.A_phagocytophilum-p|Anaplasma phagocytophilum| Fasta| | |
| - | |2.A_aeolicus-p|Aquifex aeolicus| Fasta| | |
| - | |22578.A_yellows-p|Aster yellows witches'-broom phytoplasma| Fasta| | |
| - | |20640.Azoarcus_sp-p|Azoarcus sp.| Fasta| | |
| - | |136.B_anthracis_Ames-p|Bacillus anthracis Ames| Fasta| | |
| - | |1642.B_anthracis_Ames_ancestor-p|Bacillus anthracis Ames ancestor| Fasta| | |
| - | |20000.B_anthracis_Sterne-p|Bacillus anthracis Sterne| Fasta| | |
| - | |902.B_cereus_ATCC_10987-p|Bacillus cereus ATCC 10987| Fasta| | |
| - | |134.B_cereus_ATCC_14579-p|Bacillus cereus ATCC 14579| Fasta| | |
| - | |20340.B_cereus_ZK-p|Bacillus cereus ZK| Fasta| | |
| - | |20483.B_clausii-p|Bacillus clausii| Fasta| | |
| - | |5.B_halodurans-p|Bacillus halodurans| Fasta| | |
| - | |20380.B_licheniformis_Goettingen-p|Bacillus licheniformis Goettingen| Fasta| | |
| - | |20360.B_licheniformis_Novozymes-p|Bacillus licheniformis Novozymes| Fasta| | |
| - | |6.B_subtilis-p|Bacillus subtilis| Fasta| | |
| - | |20002.B_thuringiensis-p|Bacillus thuringiensis konkukian| Fasta| | |
| - | |21185.B_fragilis_ATCC_25285-p|Bacteroides fragilis ATCC 25285| Fasta| | |
| - | |20362.B_fragilis_YCH46-p|Bacteroides fragilis YCH46| Fasta| | |
| - | |127.B_thetaiotaomicron-p|Bacteroides thetaiotaomicron| Fasta| | |
| - | |19663.B_henselae-p|Bartonella henselae| Fasta| | |
| - | |19588.B_quintana-p|Bartonella quintana| Fasta| | |
| - | |23144.B_cicadellinicola-p|Baumannia cicadellinicola| Fasta| | |
| - | |662.B_bacteriovorus-p|Bdellovibrio bacteriovorus| Fasta| | |
| - | |99.B_longum-p|Bifidobacterium longum| Fasta| | |
| - | |142.B_floridanus-p|Blochmannia floridanus| Fasta| | |
| - | |22009.B_pennsylvanicus-p|Blochmannia pennsylvanicus| Fasta| | |
| - | |22586.B_avium-p|Bordetella avium| Fasta| | |
| - | |143.B_bronchiseptica-p|Bordetella bronchiseptica| Fasta| | |
| - | |144.B_parapertussis-p|Bordetella parapertussis| Fasta| | |
| - | |145.B_pertussis-p|Bordetella pertussis| Fasta| | |
| - | |25460.B_afzelii-p|Borrelia afzelii PKo| Fasta| | |
| - | |7.B_burgdorferi-p|Borrelia burgdorferi| Fasta| | |
| - | |20260.B_garinii-p|Borrelia garinii| Fasta| | |
| - | |112.B_japonicum-p|Bradyrhizobium japonicum| Fasta| | |
| - | |22482.B_abortus-p|Brucella abortus| Fasta| | |
| - | |21680.B_abortus_1-p|Brucella abortus 1| Fasta| | |
| - | |74.B_melitensis-p|Brucella melitensis| Fasta| | |
| - | |100.B_suis-p|Brucella suis| Fasta| | |
| - | |8.B_aphidicola_Acyrthosiphon_pisum-p|Buchnera aphidicola Acyrthosiphon pisum| Fasta| | |
| - | |92.B_aphidicola_Schizaphis-p|Buchnera aphidicola graminum Schizaphis| Fasta| | |
| - | |116.B_aphidicola_Baizongia-p|Buchnera aphidicola pistaciae Baizongia| Fasta| | |
| - | |23339.B_cenocepacia-p|Burkholderia cenocepacia| Fasta| | |
| - | |20541.B_mallei-p|Burkholderia mallei| Fasta| | |
| - | |22243.B_pseudomallei_1710b-p|Burkholderia pseudomallei 1710b| Fasta| | |
| - | |20343.B_pseudomallei_K96243-p|Burkholderia pseudomallei K96243| Fasta| | |
| - | |22343.Burkholderia_sp-p|Burkholderia sp.| Fasta| | |
| - | |22520.B_thailandensis-p|Burkholderia thailandensis| Fasta| | |
| - | |25388.B_xenovorans-p|Burkholderia xenovorans| Fasta| | |
| - | |20886.C_jejuni-p|Campylobacter jejuni| Fasta| | |
| - | |10.C_jejuni_O-2-p|Campylobacter jejuni O:2| Fasta| | |
| - | |22347.C_hydrogenoformans-p|Carboxydothermus hydrogenoformans| Fasta| | |
| - | |48.C_crescentus-p|Caulobacter crescentus| Fasta| | |
| - | |11.C_muridarum-p|Chlamydia muridarum| Fasta| | |
| - | |12.C_pneumoniae_AR39-p|Chlamydia pneumoniae AR39| Fasta| | |
| - | |13.C_pneumoniae_CWL029-p|Chlamydia pneumoniae CWL029| Fasta| | |
| - | |14.C_pneumoniae_J138-p|Chlamydia pneumoniae J138| Fasta| | |
| - | |141.C_pneumoniae_TW-183-p|Chlamydia pneumoniae TW-183| Fasta| | |
| - | |22183.C_trachomatis_A-HAR-13-p|Chlamydia trachomatis A/HAR-13| Fasta| | |
| - | |15.C_trachomatis_D-UW-3-Cx-p|Chlamydia trachomatis D/UW-3/Cx| Fasta| | |
| - | |21280.C_abortus-p|Chlamydophila abortus| Fasta| | |
| - | |135.C_caviae-p|Chlamydophila caviae| Fasta| | |
| - | |23011.C_felis-p|Chlamydophila felis| Fasta| | |
| - | |22390.C_chlorochromatii-p|Chlorobium chlorochromatii| Fasta| | |
| - | |91.C_tepidum-p|Chlorobium tepidum| Fasta| | |
| - | |153.C_violaceum-p|Chromobacterium violaceum| Fasta| | |
| - | |23124.C_salexigens-p|Chromohalobacter salexigens| Fasta| | |
| - | |61.C_acetobutylicum-p|Clostridium acetobutylicum| Fasta| | |
| - | |25374.C_difficile-p|Clostridium difficile 630| Fasta| | |
| - | |75.C_perfringens_13-p|Clostridium perfringens 13| Fasta| | |
| - | |25435.C_perfringens_ATCC_13124-p|Clostridium perfringens ATCC 13124| Fasta| | |
| - | |25437.C_perfringens-p|Clostridium perfringens SM101| Fasta| | |
| - | |119.C_tetani-p|Clostridium tetani| Fasta| | |
| - | |21940.C_psychrerythraea-p|Colwellia psychrerythraea| Fasta| | |
| - | |328.C_diphtheriae-p|Corynebacterium diphtheriae| Fasta| | |
| - | |107.C_efficiens-p|Corynebacterium efficiens| Fasta| | |
| - | |786.C_glutamicum_Kalinowski-p|Corynebacterium glutamicum Kalinowski| Fasta| | |
| - | |785.C_glutamicum_Nakagawa-p|Corynebacterium glutamicum Nakagawa| Fasta| | |
| - | |21844.C_jeikeium-p|Corynebacterium jeikeium| Fasta| | |
| - | |130.C_burnetii-p|Coxiella burnetii| Fasta| | |
| - | |25411.C_hutchinsonii-p|Cytophaga hutchinsonii ATCC 33406| Fasta| | |
| - | |22011.D_aromatica-p|Dechloromonas aromatica| Fasta| | |
| - | |22080.D_ethenogenes-p|Dehalococcoides ethenogenes| Fasta| | |
| - | |22060.Dehalococcoides_sp-p|Dehalococcoides sp.| Fasta| | |
| - | |23158.D_geothermalis-p|Deinococcus geothermalis| Fasta| | |
| - | |16.D_radiodurans-p|Deinococcus radiodurans| Fasta| | |
| - | |23013.D_hafniense-p|Desulfitobacterium hafniense| Fasta| | |
| - | |20120.D_psychrophila-p|Desulfotalea psychrophila| Fasta| | |
| - | |22394.D_desulfuricans-p|Desulfovibrio desulfuricans| Fasta| | |
| - | |1444.D_vulgaris-p|Desulfovibrio vulgaris| Fasta| | |
| - | |22066.E_canis-p|Ehrlichia canis| Fasta| | |
| - | |22833.E_chaffeensis-p|Ehrlichia chaffeensis| Fasta| | |
| - | |21080.E_ruminantium_ARC-OVI-p|Ehrlichia ruminantium ARC-OVI| Fasta| | |
| - | |20820.E_ruminantium_CIRAD-p|Ehrlichia ruminantium CIRAD| Fasta| | |
| - | |21001.E_ruminantium_Gardel-p|Ehrlichia ruminantium Gardel| Fasta| | |
| - | |128.E_faecalis-p|Enterococcus faecalis| Fasta| | |
| - | |19682.E_carotovora-p|Erwinia carotovora| Fasta| | |
| - | |22580.E_litoralis-p|Erythrobacter litoralis HTCC2594| Fasta| | |
| - | |19.E_coli_EDL933-p|Escherichia coli EDL933| Fasta| | |
| - | |18.E_coli_K12-p|Escherichia coli K12| Fasta| | |
| - | |110.E_coli_UPEC-p|Escherichia coli O6 UPEC| Fasta| | |
| - | |25405.E_coli_536-p|Escherichia coli O6:K15:H31 536| Fasta| | |
| - | |20.E_coli_Sakai-p|Escherichia coli Sakai| Fasta| | |
| - | |23099.E_coli_UTI89-p|Escherichia coli UTI89| Fasta| | |
| - | |22574.E_coli_W3110-p|Escherichia coli W3110| Fasta| | |
| - | |25409.F_tularensis_FSC_198_tularensis-p|Francisella tularensis FSC 198 tularensis| Fasta| | |
| - | |22969.F_tularensis_holarctica-p|Francisella tularensis holarctica| Fasta| | |
| - | |20762.F_tularensis-p|Francisella tularensis tularensis| Fasta| | |
| - | |22594.Frankia_sp-p|Frankia sp.| Fasta| | |
| - | |83.F_nucleatum-p|Fusobacterium nucleatum nucleatum| Fasta| | |
| - | |20702.G_kaustophilus-p|Geobacillus kaustophilus| Fasta| | |
| - | |22396.G_metallireducens-p|Geobacter metallireducens| Fasta| | |
| - | |594.G_sulfurreducens-p|Geobacter sulfurreducens| Fasta| | |
| - | |154.G_violaceus-p|Gloeobacter violaceus| Fasta| | |
| - | |20920.G_oxydans-p|Gluconobacter oxydans| Fasta| | |
| - | |150.H_ducreyi-p|Haemophilus ducreyi| Fasta| | |
| - | |21810.H_influenzae_86-028NP-p|Haemophilus influenzae 86-028NP| Fasta| | |
| - | |21.H_influenzae_ATCC_51907-p|Haemophilus influenzae ATCC 51907| Fasta| | |
| - | |22516.H_chejuensis-p|Hahella chejuensis| Fasta| | |
| - | |139.H_hepaticus-p|Helicobacter hepaticus| Fasta| | |
| - | |23.H_pylori_26695-p|Helicobacter pylori 26695| Fasta| | |
| - | |23349.H_pylori_HPAG1-p|Helicobacter pylori HPAG1| Fasta| | |
| - | |24.H_pylori_J99-p|Helicobacter pylori J99| Fasta| | |
| - | |20700.I_loihiensis-p|Idiomarina loihiensis| Fasta| | |
| - | |22965.Jannaschia_sp-p|Jannaschia sp.| Fasta| | |
| - | |20940.L_acidophilus-p|Lactobacillus acidophilus| Fasta| | |
| - | |23189.L_delbrueckii-p|Lactobacillus delbrueckii| Fasta| | |
| - | |699.L_johnsonii-p|Lactobacillus johnsonii| Fasta| | |
| - | |117.L_plantarum-p|Lactobacillus plantarum| Fasta| | |
| - | |22363.L_sakei-p|Lactobacillus sakei| Fasta| | |
| - | |23050.L_salivarius-p|Lactobacillus salivarius| Fasta| | |
| - | |26.L_lactis-p|Lactococcus lactis| Fasta| | |
| - | |23156.L_intracellularis-p|Lawsonia intracellularis| Fasta| | |
| - | |20840.L_pneumophila_Lens-p|Legionella pneumophila Lens| Fasta| | |
| - | |20442.L_pneumophila_Paris-p|Legionella pneumophila Paris| Fasta| | |
| - | |20420.L_pneumophila_Philadelphia_1-p|Legionella pneumophila Philadelphia 1| Fasta| | |
| - | |20160.L_xyli-p|Leifsonia xyli xyli| Fasta| | |
| - | |1122.L_interrogans_Icterohaemorrhagiae-p|Leptospira interrogans copenhageni Icterohaemorrhagiae| Fasta| | |
| - | |104.L_interrogans_lai-p|Leptospira interrogans lai| Fasta| | |
| - | |67.L_innocua-p|Listeria innocua| Fasta| | |
| - | |68.L_monocytogenes_1-2a-p|Listeria monocytogenes 1/2a| Fasta| | |
| - | |1563.L_monocytogenes_4b-p|Listeria monocytogenes 4b| Fasta| | |
| - | |22510.M_magneticum-p|Magnetospirillum magneticum| Fasta| | |
| - | |20364.M_succiniciproducens-p|Mannheimia succiniciproducens| Fasta| | |
| - | |20108.M_florum-p|Mesoplasma florum| Fasta| | |
| - | |25407.Mesorhizobium_sp-p|Mesorhizobium sp.| Fasta| | |
| - | |23191.M_flagellatus-p|Methylobacillus flagellatus| Fasta| | |
| - | |20445.M_capsulatus-p|Methylococcus capsulatus| Fasta| | |
| - | |22518.M_thermoacetica-p|Moorella thermoacetica| Fasta| | |
| - | |138.M_bovis-p|Mycobacterium bovis| Fasta| | |
| - | |29.M_leprae-p|Mycobacterium leprae| Fasta| | |
| - | |679.M_paratuberculosis-p|Mycobacterium paratuberculosis| Fasta| | |
| - | |25058.M_sp-p|Mycobacterium sp. MCS| Fasta| | |
| - | |30.M_tuberculosis_ATCC_25618-p|Mycobacterium tuberculosis ATCC 25618| Fasta| | |
| - | |53.M_tuberculosis_Oshkosh-p|Mycobacterium tuberculosis Oshkosh| Fasta| | |
| - | |22508.M_capricolum-p|Mycoplasma capricolum| Fasta| | |
| - | |137.M_gallisepticum-p|Mycoplasma gallisepticum| Fasta| | |
| - | |31.M_genitalium-p|Mycoplasma genitalium| Fasta| | |
| - | |20440.M_hyopneumoniae_232-p|Mycoplasma hyopneumoniae 232| Fasta| | |
| - | |22020.M_hyopneumoniae_7448-p|Mycoplasma hyopneumoniae 7448| Fasta| | |
| - | |22003.M_hyopneumoniae_J-p|Mycoplasma hyopneumoniae J| Fasta| | |
| - | |3315.M_mobile-p|Mycoplasma mobile| Fasta| | |
| - | |762.M_mycoides-p|Mycoplasma mycoides SC| Fasta| | |
| - | |108.M_penetrans-p|Mycoplasma penetrans| Fasta| | |
| - | |32.M_pneumoniae-p|Mycoplasma pneumoniae| Fasta| | |
| - | |52.M_pulmonis-p|Mycoplasma pulmonis| Fasta| | |
| - | |22005.M_synoviae-p|Mycoplasma synoviae| Fasta| | |
| - | |23351.M_xanthus-p|Myxococcus xanthus| Fasta| | |
| - | |21062.N_gonorrhoeae-p|Neisseria gonorrhoeae| Fasta| | |
| - | |33.N_meningitidis_A-p|Neisseria meningitidis A| Fasta| | |
| - | |34.N_meningitidis-p|Neisseria meningitidis B| Fasta| | |
| - | |22831.N_sennetsu-p|Neorickettsia sennetsu| Fasta| | |
| - | |23122.N_hamburgensis-p|Nitrobacter hamburgensis| Fasta| | |
| - | |22168.N_winogradskyi-p|Nitrobacter winogradskyi| Fasta| | |
| - | |22304.N_oceani-p|Nitrosococcus oceani| Fasta| | |
| - | |133.N_europaea-p|Nitrosomonas europaea| Fasta| | |
| - | |22443.N_multiformis-p|Nitrosospira multiformis| Fasta| | |
| - | |20447.N_farcinica-p|Nocardia farcinica| Fasta| | |
| - | |22600.N_aromaticivorans-p|Novosphingobium aromaticivorans| Fasta| | |
| - | |97.O_iheyensis-p|Oceanobacillus iheyensis| Fasta| | |
| - | |659.O_yellows-p|Onion yellows phytoplasma| Fasta| | |
| - | |1242.Parachlamydia_sp-p|Parachlamydia sp.| Fasta| | |
| - | |35.P_multocida-p|Pasteurella multocida| Fasta| | |
| - | |21920.P_ubique-p|Pelagibacter ubique| Fasta| | |
| - | |22323.P_carbinolicus-p|Pelobacter carbinolicus| Fasta| | |
| - | |22392.P_luteolum-p|Pelodictyon luteolum| Fasta| | |
| - | |1462.P_profundum-p|Photobacterium profundum| Fasta| | |
| - | |155.P_luminescens-p|Photorhabdus luminescens laumondii| Fasta| | |
| - | |25386.P_sp-p|Polaromonas sp. JS666| Fasta| | |
| - | |152.P_gingivalis-p|Porphyromonas gingivalis| Fasta| | |
| - | |140.P_marinus_CCMP_1375-p|Prochlorococcus marinus CCMP 1375| Fasta| | |
| - | |147.P_marinus_CCMP_1378-p|Prochlorococcus marinus CCMP 1378| Fasta| | |
| - | |22424.P_marinus_MIT_9312-p|Prochlorococcus marinus MIT 9312| Fasta| | |
| - | |148.P_marinus_MIT_9313-p|Prochlorococcus marinus MIT 9313| Fasta| | |
| - | |22194.P_marinus_NATL2A-p|Prochlorococcus marinus NATL2A| Fasta| | |
| - | |20122.P_acnes-p|Propionibacterium acnes| Fasta| | |
| - | |25380.P_atlantica-p|Pseudoalteromonas atlantica T6c| Fasta| | |
| - | |22225.P_haloplanktis-p|Pseudoalteromonas haloplanktis| Fasta| | |
| - | |36.P_aeruginosa-p|Pseudomonas aeruginosa| Fasta| | |
| - | |21840.P_fluorescens_Pf-5-p|Pseudomonas fluorescens Pf-5| Fasta| | |
| - | |22325.P_fluorescens_PfO-1-p|Pseudomonas fluorescens PfO-1| Fasta| | |
| - | |109.P_putida-p|Pseudomonas putida| Fasta| | |
| - | |22013.P_syringae_phaseolicola-p|Pseudomonas syringae phaseolicola| Fasta| | |
| - | |21635.P_syringae_syringae-p|Pseudomonas syringae syringae| Fasta| | |
| - | |126.P_syringae_tomato-p|Pseudomonas syringae tomato| Fasta| | |
| - | |21900.P_arcticum-p|Psychrobacter arcticum| Fasta| | |
| - | |23126.P_cryohalolentis-p|Psychrobacter cryohalolentis| Fasta| | |
| - | |22196.R_eutropha-p|Ralstonia eutropha| Fasta| | |
| - | |23146.R_metallidurans-p|Ralstonia metallidurans| Fasta| | |
| - | |72.R_solanacearum-p|Ralstonia solanacearum| Fasta| | |
| - | |22584.R_etli-p|Rhizobium etli| Fasta| | |
| - | |23148.R_leguminosarum-p|Rhizobium leguminosarum bv. viciae| Fasta| | |
| - | |54.R_loti-p|Rhizobium loti| Fasta| | |
| - | |58.R_meliloti-p|Rhizobium meliloti| Fasta| | |
| - | |22306.R_sphaeroides-p|Rhodobacter sphaeroides| Fasta| | |
| - | |25456.Rhodococcus_sp-p|Rhodococcus sp.| Fasta| | |
| - | |23009.R_ferrireducens-p|Rhodoferax ferrireducens| Fasta| | |
| - | |149.R_baltica-p|Rhodopirellula baltica| Fasta| | |
| - | |557.R_palustris_ATCC_BAA-98-p|Rhodopseudomonas palustris ATCC BAA-98| Fasta| | |
| - | |23030.R_palustris_BisB18-p|Rhodopseudomonas palustris BisB18| Fasta| | |
| - | |25391.R_palustris_BisB5-p|Rhodopseudomonas palustris BisB5| Fasta| | |
| - | |22588.R_palustris_HaA2-p|Rhodopseudomonas palustris HaA2| Fasta| | |
| - | |22512.R_rubrum-p|Rhodospirillum rubrum| Fasta| | |
| - | |23097.R_bellii-p|Rickettsia bellii| Fasta| | |
| - | |65.R_conorii-p|Rickettsia conorii| Fasta| | |
| - | |21720.R_felis-p|Rickettsia felis| Fasta| | |
| - | |39.R_prowazekii-p|Rickettsia prowazekii| Fasta| | |
| - | |20220.R_typhi-p|Rickettsia typhi| Fasta| | |
| - | |25335.R_denitrificans-p|Roseobacter denitrificans| Fasta| | |
| - | |25050.R_xylanophilus-p|Rubrobacter xylanophilus| Fasta| | |
| - | |23018.S_degradans-p|Saccharophagus degradans| Fasta| | |
| - | |22539.S_ruber-p|Salinibacter ruber| Fasta| | |
| - | |21321.S_choleraesuis-p|Salmonella choleraesuis| Fasta| | |
| - | |20962.S_paratyphi-a-p|Salmonella paratyphi-a| Fasta| | |
| - | |129.S_typhi_ATCC_700931-p|Salmonella typhi ATCC 700931| Fasta| | |
| - | |70.S_typhi_CT18-p|Salmonella typhi CT18| Fasta| | |
| - | |69.S_typhimurium-p|Salmonella typhimurium| Fasta| | |
| - | |25384.S_denitrificans-p|Shewanella denitrificans OS217| Fasta| | |
| - | |106.S_oneidensis-p|Shewanella oneidensis| Fasta| | |
| - | |22433.S_boydii-p|Shigella boydii| Fasta| | |
| - | |22435.S_dysenteriae-p|Shigella dysenteriae| Fasta| | |
| - | |132.S_flexneri_2457T-p|Shigella flexneri 2457T| Fasta| | |
| - | |103.S_flexneri_301-p|Shigella flexneri 301| Fasta| | |
| - | |22108.S_sonnei-p|Shigella sonnei| Fasta| | |
| - | |20780.S_pomeroyi-p|Silicibacter pomeroyi| Fasta| | |
| - | |23193.Silicibacter_sp-p|Silicibacter sp.| Fasta| | |
| - | |22572.S_glossinidius-p|Sodalis glossinidius| Fasta| | |
| - | |23185.S_alaskensis-p|Sphingopyxis alaskensis| Fasta| | |
| - | |20863.S_aureus_COL-p|Staphylococcus aureus COL| Fasta| | |
| - | |19583.S_aureus_MRSA252-p|Staphylococcus aureus MRSA252| Fasta| | |
| - | |19585.S_aureus_MSSA476-p|Staphylococcus aureus MSSA476| Fasta| | |
| - | |86.S_aureus_MW2-p|Staphylococcus aureus MW2| Fasta| | |
| - | |51.S_aureus_Mu50-p|Staphylococcus aureus Mu50| Fasta| | |
| - | |50.S_aureus_N315-p|Staphylococcus aureus N315| Fasta| | |
| - | |22608.S_aureus_NCTC_8325-p|Staphylococcus aureus NCTC 8325| Fasta| | |
| - | |22602.S_aureus_USA300-p|Staphylococcus aureus USA300| Fasta| | |
| - | |22485.S_aureus_bovine_RF122-p|Staphylococcus aureus bovine RF122| Fasta| | |
| - | |113.S_epidermidis_ATCC_12228-p|Staphylococcus epidermidis ATCC 12228| Fasta| | |
| - | |20865.S_epidermidis_ATCC_35984-p|Staphylococcus epidermidis ATCC 35984| Fasta| | |
| - | |21825.S_haemolyticus-p|Staphylococcus haemolyticus| Fasta| | |
| - | |22064.S_saprophyticus-p|Staphylococcus saprophyticus| Fasta| | |
| - | |98.S_agalactiae-p|Streptococcus agalactiae III| Fasta| | |
| - | |22229.S_agalactiae_Ia-p|Streptococcus agalactiae Ia| Fasta| | |
| - | |95.S_agalactiae_V-p|Streptococcus agalactiae V| Fasta| | |
| - | |102.S_mutans-p|Streptococcus mutans| Fasta| | |
| - | |64.S_pneumoniae_ATCC_BAA-255-p|Streptococcus pneumoniae ATCC BAA-255| Fasta| | |
| - | |57.S_pneumoniae_TIGR4-p|Streptococcus pneumoniae TIGR4| Fasta| | |
| - | |22007.S_pyogenes_MGAS5005-p|Streptococcus pyogenes M1 MGAS5005| Fasta| | |
| - | |49.S_pyogenes_SF370-p|Streptococcus pyogenes M1 SF370| Fasta| | |
| - | |80.S_pyogenes_MGAS8232-p|Streptococcus pyogenes M18 MGAS8232| Fasta| | |
| - | |21980.S_pyogenes_MGAS6180-p|Streptococcus pyogenes M28 MGAS6180| Fasta| | |
| - | |93.S_pyogenes_ATCC_BAA-595-p|Streptococcus pyogenes M3 ATCC BAA-595| Fasta| | |
| - | |125.S_pyogenes_SSI-1-p|Streptococcus pyogenes M3 SSI-1| Fasta| | |
| - | |20460.S_pyogenes_ATCC_BAA-946-p|Streptococcus pyogenes M6 ATCC BAA-946| Fasta| | |
| - | |23168.S_pyogenes_MGAS10270-p|Streptococcus pyogenes MGAS10270| Fasta| | |
| - | |23164.S_pyogenes_MGAS10750-p|Streptococcus pyogenes MGAS10750| Fasta| | |
| - | |23166.S_pyogenes_MGAS2096-p|Streptococcus pyogenes MGAS2096| Fasta| | |
| - | |23162.S_pyogenes_MGAS9429-p|Streptococcus pyogenes MGAS9429| Fasta| | |
| - | |20662.S_thermophilus_ATCC_BAA-250-p|Streptococcus thermophilus ATCC BAA-250| Fasta| | |
| - | |20664.S_thermophilus_CNRZ_1066-p|Streptococcus thermophilus CNRZ 1066| Fasta| | |
| - | |131.S_avermitilis-p|Streptomyces avermitilis| Fasta| | |
| - | |84.S_coelicolor-p|Streptomyces coelicolor| Fasta| | |
| - | |20300.S_thermophilum-p|Symbiobacterium thermophilum| Fasta| | |
| - | |96.S_elongatus-p|Synechococcus elongatus| Fasta| | |
| - | |20800.Synechococcus_sp_ATCC_27144-p|Synechococcus sp. ATCC 27144| Fasta| | |
| - | |22398.Synechococcus_sp_CC9605-p|Synechococcus sp. CC9605| Fasta| | |
| - | |22400.Synechococcus_sp_CC9902-p|Synechococcus sp. CC9902| Fasta| | |
| - | |22596.Synechococcus_sp_JA-2-3Ba2-13-p|Synechococcus sp. JA-2-3B'a(2-13)| Fasta| | |
| - | |22598.Synechococcus_sp_JA-3-3Ab-p|Synechococcus sp. JA-3-3Ab| Fasta| | |
| - | |22437.Synechococcus_sp_PCC_7942-p|Synechococcus sp. PCC 7942| Fasta| | |
| - | |146.Synechococcus_sp_WH8102-p|Synechococcus sp. WH8102| Fasta| | |
| - | |41.Synechocystis_sp-p|Synechocystis sp.| Fasta| | |
| - | |22576.S_aciditrophicus-p|Syntrophus aciditrophicus| Fasta| | |
| - | |85.T_tengcongensis-p|Thermoanaerobacter tengcongensis| Fasta| | |
| - | |22062.T_fusca-p|Thermobifida fusca| Fasta| | |
| - | |43.T_maritima-p|Thermotoga maritima| Fasta| | |
| - | |1244.T_thermophilus_HB27-p|Thermus thermophilus HB27| Fasta| | |
| - | |20981.T_thermophilus_HB8-p|Thermus thermophilus HB8| Fasta| | |
| - | |22106.T_denitrificans_ATCC_25259-p|Thiobacillus denitrificans ATCC 25259| Fasta| | |
| - | |22402.T_crunogena-p|Thiomicrospira crunogena| Fasta| | |
| - | |22422.T_denitrificans_ATCC_33889-p|Thiomicrospira denitrificans ATCC 33889| Fasta| | |
| - | |742.T_denticola-p|Treponema denticola| Fasta| | |
| - | |44.T_pallidum-p|Treponema pallidum| Fasta| | |
| - | |25399.T_erythraeum-p|Trichodesmium erythraeum IMS101| Fasta| | |
| - | |120.T_whipplei_TW08-27-p|Tropheryma whipplei TW08/27| Fasta| | |
| - | |121.T_whipplei_Twist-p|Tropheryma whipplei Twist| Fasta| | |
| - | |45.U_parvum-p|Ureaplasma parvum| Fasta| | |
| - | |46.V_cholerae-p|Vibrio cholerae| Fasta| | |
| - | |21222.V_fischeri-p|Vibrio fischeri| Fasta| | |
| - | |124.V_parahaemolyticus-p|Vibrio parahaemolyticus| Fasta| | |
| - | |111.V_vulnificus_CMCP6-p|Vibrio vulnificus CMCP6| Fasta| | |
| - | |156.V_vulnificus_YJ016-p|Vibrio vulnificus YJ016| Fasta| | |
| - | |101.W_glossinidia-p|Wigglesworthia glossinidia brevipalpis| Fasta| | |
| - | |765.W_pipientis-p|Wolbachia pipientis wMel| Fasta| | |
| - | |21004.Wolbachia_sp-p|Wolbachia sp.| Fasta| | |
| - | |151.W_succinogenes-p|Wolinella succinogenes| Fasta| | |
| - | |88.X_axonopodis-p|Xanthomonas axonopodis citri| Fasta| | |
| - | |21700.X_campestris_8004-p|Xanthomonas campestris 8004| Fasta| | |
| - | |22365.X_campestris_85-10-p|Xanthomonas campestris 85-10| Fasta| | |
| - | |87.X_campestris_ATCC_33913-p|Xanthomonas campestris campestris ATCC 33913| Fasta| | |
| - | |21006.X_oryzae-p|Xanthomonas oryzae oryzae| Fasta| | |
| - | |22542.X_oryzae_oryzae-p|Xanthomonas oryzae oryzae| Fasta| | |
| - | |47.X_fastidiosa_9a5c-p|Xylella fastidiosa 9a5c| Fasta| | |
| - | |118.X_fastidiosa_Temecula1-p|Xylella fastidiosa Temecula1| Fasta| | |
| - | |1113.Y_pestis_91001-p|Yersinia pestis 91001| Fasta| | |
| - | |25054.Y_pestis_Antiqua-p|Yersinia pestis Antiqua| Fasta| | |
| - | |66.Y_pestis_CO-92-p|Yersinia pestis CO-92| Fasta| | |
| - | |94.Y_pestis_KIM5-p|Yersinia pestis KIM5| Fasta| | |
| - | |25056.Y_pestis_Nepal516-p|Yersinia pestis Nepal516| Fasta| | |
| - | |20262.Y_pseudotuberculosis-p|Yersinia pseudotuberculosis| Fasta| | |
| - | |20760.Z_mobilis-p|Zymomonas mobilis| Fasta| | |
| - | |1.A_pernix-p|Aeropyrum pernix| Fasta| | |
| - | |4.A_fulgidus-p|Archaeoglobus fulgidus| Fasta| | |
| - | |20560.H_marismortui-p|Haloarcula marismortui| Fasta| | |
| - | |22.H_salinarium-p|Halobacterium salinarium| Fasta| | |
| - | |25333.H_walsbyi-p|Haloquadratum walsbyi| Fasta| | |
| - | |27.M_thermoautotrophicum-p|Methanobacterium thermoautotrophicum| Fasta| | |
| - | |25376.M_burtonii-p|Methanococcoides burtonii| Fasta| | |
| - | |28.M_jannaschii-p|Methanococcus jannaschii| Fasta| | |
| - | |942.M_maripaludis-p|Methanococcus maripaludis| Fasta| | |
| - | |81.M_kandleri-p|Methanopyrus kandleri| Fasta| | |
| - | |82.M_acetivorans-p|Methanosarcina acetivorans| Fasta| | |
| - | |22190.M_barkeri-p|Methanosarcina barkeri| Fasta| | |
| - | |89.M_mazei-p|Methanosarcina mazei| Fasta| | |
| - | |22544.M_stadtmanae-p|Methanosphaera stadtmanae| Fasta| | |
| - | |22610.M_hungatei-p|Methanospirillum hungatei| Fasta| | |
| - | |597.N_equitans-p|Nanoarchaeum equitans| Fasta| | |
| - | |22223.N_pharaonis-p|Natronomonas pharaonis| Fasta| | |
| - | |12842.P_torridus-p|Picrophilus torridus| Fasta| | |
| - | |76.P_aerophilum-p|Pyrobaculum aerophilum| Fasta| | |
| - | |37.P_abyssi-p|Pyrococcus abyssi| Fasta| | |
| - | |77.P_furiosus-p|Pyrococcus furiosus| Fasta| | |
| - | |38.P_horikoshii-p|Pyrococcus horikoshii| Fasta| | |
| - | |21106.P_kodakaraensis-p|Pyrococcus kodakaraensis| Fasta| | |
| - | |21860.S_acidocaldarius-p|Sulfolobus acidocaldarius| Fasta| | |
| - | |56.S_solfataricus-p|Sulfolobus solfataricus| Fasta| | |
| - | |63.S_tokodaii-p|Sulfolobus tokodaii| Fasta| | |
| - | |42.T_acidophilum-p|Thermoplasma acidophilum| Fasta| | |
| - | |60.T_volcanium-p|Thermoplasma volcanium| Fasta| | |
| - | | |
| - | ==== Fasta full genomes ==== | |
| - | | |
| - | WSFasta provides sequence similarity searching against complete genomes databases. | |
| - | | |
| - | ^ dbname ^ Description ^ Tools ^ | |
| - | |3702-g|Euk Arabidopsis thaliana|Fasta| | |
| - | |284811-g|Euk Ashbya gossypii ATCC 10895|Fasta| | |
| - | |330879-g|Euk Aspergillus fumigatus Af293|Fasta| | |
| - | |5061-g|Euk Aspergillus niger|Fasta| | |
| - | |6239-g|Euk Caenorhabditis elegans|Fasta| | |
| - | |284593-g|Euk Candida glabrata CBS 138|Fasta| | |
| - | |9615-g|Euk Canis familiaris|Fasta| | |
| - | |283643-g|Euk Cryptococcus neoformans var. neoformans B-3501A|Fasta| | |
| - | | |
| - | |214684-g|Euk Cryptococcus neoformans var. neoformans JEC21|Fasta| | |
| - | |5807-g|Euk Cryptosporidium parvum|Fasta| | |
| - | |45157-g|Euk Cyanidioschyzon merolae|Fasta| | |
| - | |284592-g|Euk Debaryomyces hansenii CBS767|Fasta| | |
| - | |352472-g|Euk Dictyostelium discoideum AX4|Fasta| | |
| - | |7227-g|Euk Drosophila melanogaster|Fasta| | |
| - | |7237-g|Euk Drosophila pseudoobscura|Fasta| | |
| - | |284813-g|Euk Encephalitozoon cuniculi GB-M1|Fasta| | |
| - | |9031-g|Euk Gallus gallus|Fasta| | |
| - | | |
| - | |284590-g|Euk Kluyveromyces lactis NRRL Y-1140|Fasta| | |
| - | |5664-g|Euk Leishmania major|Fasta| | |
| - | |347515-g|Euk Leishmania major strain Friedlin|Fasta| | |
| - | |39947-g|Euk Oryza sativa (japonica cultivar-group)|Fasta| | |
| - | |9598-g|Euk Pan troglodytes|Fasta| | |
| - | |5888-g|Euk Paramecium tetraurelia|Fasta| | |
| - | |322104-g|Euk Pichia stipitis CBS 6054|Fasta| | |
| - | |36329-g|Euk Plasmodium falciparum 3D7|Fasta| | |
| - | |10116-g|Euk Rattus norvegicus|Fasta| | |
| - | | |
| - | |4932-g|Euk Saccharomyces cerevisiae|Fasta| | |
| - | |284812-g|Euk Schizosaccharomyces pombe 972h-|Fasta| | |
| - | |5811-g|Euk Toxoplasma gondii|Fasta| | |
| - | |383379-g|Euk Toxoplasma gondii RH|Fasta| | |
| - | |5691-g|Euk Trypanosoma brucei|Fasta| | |
| - | |284591-g|Euk Yarrowia lipolytica CLIB122|Fasta| | |
| - | | |
| - | |272557-g|Arc Aeropyrum pernix K1|Fasta| | |
| - | |224325-g|Arc Archaeoglobus fulgidus DSM 4304|Fasta| | |
| - | | |
| - | |46770-g|Arc Cenarchaeum symbiosum|Fasta| | |
| - | |272569-g|Arc Haloarcula marismortui ATCC 43049|Fasta| | |
| - | |64091-g|Arc Halobacterium sp. NRC-1|Fasta| | |
| - | |293091-g|Arc Haloquadratum walsbyi|Fasta| | |
| - | |415426-g|Arc Hyperthermus butylicus DSM 5456|Fasta| | |
| - | |243232-g|Arc Methanocaldococcus jannaschii DSM 2661|Fasta| | |
| - | |259564-g|Arc Methanococcoides burtonii DSM 6242|Fasta| | |
| - | |39152-g|Arc Methanococcus maripaludis|Fasta| | |
| - | |410358-g|Arc Methanocorpusculum labreanum Z|Fasta| | |
| - | | |
| - | |368407-g|Arc Methanoculleus marisnigri JR1|Fasta| | |
| - | |190192-g|Arc Methanopyrus kandleri AV19|Fasta| | |
| - | |349307-g|Arc Methanosaeta thermophila PT|Fasta| | |
| - | |188937-g|Arc Methanosarcina acetivorans C2A|Fasta| | |
| - | |269797-g|Arc Methanosarcina barkeri str. Fusaro|Fasta| | |
| - | |192952-g|Arc Methanosarcina mazei Go1|Fasta| | |
| - | |339860-g|Arc Methanosphaera stadtmanae DSM 3091|Fasta| | |
| - | |323259-g|Arc Methanospirillum hungatei JF-1|Fasta| | |
| - | |187420-g|Arc Methanothermobacter thermautotrophicus str. Delta H|Fasta| | |
| - | | |
| - | |228908-g|Arc Nanoarchaeum equitans Kin4-M|Fasta| | |
| - | |348780-g|Arc Natronomonas pharaonis DSM 2160|Fasta| | |
| - | |263820-g|Arc Picrophilus torridus DSM 9790|Fasta| | |
| - | |13773-g|Arc Pyrobaculum aerophilum|Fasta| | |
| - | |410359-g|Arc Pyrobaculum calidifontis JCM 11548|Fasta| | |
| - | |384616-g|Arc Pyrobaculum islandicum DSM 4184|Fasta| | |
| - | |272844-g|Arc Pyrococcus abyssi GE5|Fasta| | |
| - | |186497-g|Arc Pyrococcus furiosus DSM 3638|Fasta| | |
| - | |70601-g|Arc Pyrococcus horikoshii OT3|Fasta| | |
| - | | |
| - | |399550-g|Arc Staphylothermus marinus F1|Fasta| | |
| - | |330779-g|Arc Sulfolobus acidocaldarius DSM 639|Fasta| | |
| - | |2287-g|Arc Sulfolobus solfataricus|Fasta| | |
| - | |273063-g|Arc Sulfolobus tokodaii str. 7|Fasta| | |
| - | |69014-g|Arc Thermococcus kodakarensis KOD1|Fasta| | |
| - | |368408-g|Arc Thermofilum pendens Hrk 5|Fasta| | |
| - | |273075-g|Arc Thermoplasma acidophilum DSM 1728|Fasta| | |
| - | |273116-g|Arc Thermoplasma volcanium GSS1|Fasta| | |
| - | |351160-g|Arc uncultured methanogenic archaeon RC-I|Fasta| | |
| - | | |
| - | |204669-g|Bac Acidobacteria bacterium Ellin345|Fasta| | |
| - | |351607-g|Bac Acidothermus cellulolyticus 11B|Fasta| | |
| - | |397945-g|Bac Acidovorax avenae subsp. citrulli AAC00-1|Fasta| | |
| - | |232721-g|Bac Acidovorax sp. JS42|Fasta| | |
| - | |400667-g|Bac Acinetobacter baumannii ATCC 17978|Fasta| | |
| - | |62977-g|Bac Acinetobacter sp. ADP1|Fasta| | |
| - | |416269-g|Bac Actinobacillus pleuropneumoniae L20|Fasta| | |
| - | |380703-g|Bac Aeromonas hydrophila subsp. hydrophila ATCC 7966|Fasta| | |
| - | | |
| - | |176299-g|Bac Agrobacterium tumefaciens str. C58|Fasta| | |
| - | |393595-g|Bac Alcanivorax borkumensis SK2|Fasta| | |
| - | |187272-g|Bac Alkalilimnicola ehrlichei MLHE-1|Fasta| | |
| - | |240292-g|Bac Anabaena variabilis ATCC 29413|Fasta| | |
| - | |290397-g|Bac Anaeromyxobacter dehalogenans 2CP-C|Fasta| | |
| - | |234826-g|Bac Anaplasma marginale str. St. Maries|Fasta| | |
| - | |212042-g|Bac Anaplasma phagocytophilum HZ|Fasta| | |
| - | |224324-g|Bac Aquifex aeolicus VF5|Fasta| | |
| - | |290340-g|Bac Arthrobacter aurescens TC1|Fasta| | |
| - | | |
| - | |290399-g|Bac Arthrobacter sp. FB24|Fasta| | |
| - | |322098-g|Bac Aster yellows witches'-broom phytoplasma AYWB|Fasta| | |
| - | |62928-g|Bac Azoarcus sp. BH72|Fasta| | |
| - | |76114-g|Bac Azoarcus sp. EbN1|Fasta| | |
| - | |261594-g|Bac Bacillus anthracis str. 'Ames Ancestor'|Fasta| | |
| - | |198094-g|Bac Bacillus anthracis str. Ames|Fasta| | |
| - | |260799-g|Bac Bacillus anthracis str. Sterne|Fasta| | |
| - | |222523-g|Bac Bacillus cereus ATCC 10987|Fasta| | |
| - | |226900-g|Bac Bacillus cereus ATCC 14579|Fasta| | |
| - | | |
| - | |288681-g|Bac Bacillus cereus E33L|Fasta| | |
| - | |66692-g|Bac Bacillus clausii KSM-K16|Fasta| | |
| - | |272558-g|Bac Bacillus halodurans C-125|Fasta| | |
| - | |279010-g|Bac Bacillus licheniformis ATCC 14580|Fasta| | |
| - | |224308-g|Bac Bacillus subtilis subsp. subtilis str. 168|Fasta| | |
| - | |281309-g|Bac Bacillus thuringiensis serovar konkukian str. 97-27|Fasta| | |
| - | |412694-g|Bac Bacillus thuringiensis str. Al Hakam|Fasta| | |
| - | |272559-g|Bac Bacteroides fragilis NCTC 9343|Fasta| | |
| - | |295405-g|Bac Bacteroides fragilis YCH46|Fasta| | |
| - | | |
| - | |226186-g|Bac Bacteroides thetaiotaomicron VPI-5482|Fasta| | |
| - | |360095-g|Bac Bartonella bacilliformis KC583|Fasta| | |
| - | |38323-g|Bac Bartonella henselae|Fasta| | |
| - | |283165-g|Bac Bartonella quintana str. Toulouse|Fasta| | |
| - | |374463-g|Bac Baumannia cicadellinicola str. Hc (Homalodisca coagulata)|Fasta| | |
| - | |959-g|Bac Bdellovibrio bacteriovorus|Fasta| | |
| - | |367928-g|Bac Bifidobacterium adolescentis ATCC 15703|Fasta| | |
| - | |206672-g|Bac Bifidobacterium longum NCC2705|Fasta| | |
| - | |360910-g|Bac Bordetella avium 197N|Fasta| | |
| - | | |
| - | |518-g|Bac Bordetella bronchiseptica|Fasta| | |
| - | |257311-g|Bac Bordetella parapertussis 12822|Fasta| | |
| - | |520-g|Bac Bordetella pertussis|Fasta| | |
| - | |390236-g|Bac Borrelia afzelii PKo|Fasta| | |
| - | |224326-g|Bac Borrelia burgdorferi B31|Fasta| | |
| - | |290434-g|Bac Borrelia garinii PBi|Fasta| | |
| - | |224911-g|Bac Bradyrhizobium japonicum USDA 110|Fasta| | |
| - | |235-g|Bac Brucella abortus|Fasta| | |
| - | |262698-g|Bac Brucella abortus biovar 1 str. 9-941|Fasta| | |
| - | | |
| - | |224914-g|Bac Brucella melitensis 16M|Fasta| | |
| - | |204722-g|Bac Brucella suis 1330|Fasta| | |
| - | |107806-g|Bac Buchnera aphidicola str. APS (Acyrthosiphon pisum)|Fasta| | |
| - | |224915-g|Bac Buchnera aphidicola str. Bp (Baizongia pistaciae)|Fasta| | |
| - | |372461-g|Bac Buchnera aphidicola str. Cc (Cinara cedri)|Fasta| | |
| - | |198804-g|Bac Buchnera aphidicola str. Sg (Schizaphis graminum)|Fasta| | |
| - | |331271-g|Bac Burkholderia cenocepacia AU 1054|Fasta| | |
| - | |331272-g|Bac Burkholderia cenocepacia HI2424|Fasta| | |
| - | |339670-g|Bac Burkholderia cepacia AMMD|Fasta| | |
| - | | |
| - | |243160-g|Bac Burkholderia mallei ATCC 23344|Fasta| | |
| - | |357348-g|Bac Burkholderia pseudomallei 1106a|Fasta| | |
| - | |320372-g|Bac Burkholderia pseudomallei 1710b|Fasta| | |
| - | |320373-g|Bac Burkholderia pseudomallei 668|Fasta| | |
| - | |272560-g|Bac Burkholderia pseudomallei K96243|Fasta| | |
| - | |269483-g|Bac Burkholderia sp. 383|Fasta| | |
| - | |271848-g|Bac Burkholderia thailandensis E264|Fasta| | |
| - | |266265-g|Bac Burkholderia xenovorans LB400|Fasta| | |
| - | |360106-g|Bac Campylobacter fetus subsp. fetus 82-40|Fasta| | |
| - | | |
| - | |195099-g|Bac Campylobacter jejuni RM1221|Fasta| | |
| - | |354242-g|Bac Campylobacter jejuni subsp. jejuni 81-176|Fasta| | |
| - | |192222-g|Bac Campylobacter jejuni subsp. jejuni NCTC 11168|Fasta| | |
| - | |203907-g|Bac Candidatus Blochmannia floridanus|Fasta| | |
| - | |291272-g|Bac Candidatus Blochmannia pennsylvanicus str. BPEN|Fasta| | |
| - | |387662-g|Bac Candidatus Carsonella ruddii PV|Fasta| | |
| - | |335992-g|Bac Candidatus Pelagibacter ubique HTCC1062|Fasta| | |
| - | |264201-g|Bac Candidatus Protochlamydia amoebophila UWE25|Fasta| | |
| - | |413404-g|Bac Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)|Fasta| | |
| - | | |
| - | |246194-g|Bac Carboxydothermus hydrogenoformans Z-2901|Fasta| | |
| - | |190650-g|Bac Caulobacter crescentus CB15|Fasta| | |
| - | |243161-g|Bac Chlamydia muridarum Nigg|Fasta| | |
| - | |315277-g|Bac Chlamydia trachomatis A/HAR-13|Fasta| | |
| - | |272561-g|Bac Chlamydia trachomatis D/UW-3/CX|Fasta| | |
| - | |218497-g|Bac Chlamydophila abortus S26/3|Fasta| | |
| - | |227941-g|Bac Chlamydophila caviae GPIC|Fasta| | |
| - | |264202-g|Bac Chlamydophila felis Fe/C-56|Fasta| | |
| - | |115711-g|Bac Chlamydophila pneumoniae AR39|Fasta| | |
| - | | |
| - | |115713-g|Bac Chlamydophila pneumoniae CWL029|Fasta| | |
| - | |138677-g|Bac Chlamydophila pneumoniae J138|Fasta| | |
| - | |182082-g|Bac Chlamydophila pneumoniae TW-183|Fasta| | |
| - | |340177-g|Bac Chlorobium chlorochromatii CaD3|Fasta| | |
| - | |290317-g|Bac Chlorobium phaeobacteroides DSM 266|Fasta| | |
| - | |194439-g|Bac Chlorobium tepidum TLS|Fasta| | |
| - | |243365-g|Bac Chromobacterium violaceum ATCC 12472|Fasta| | |
| - | |290398-g|Bac Chromohalobacter salexigens DSM 3043|Fasta| | |
| - | |272562-g|Bac Clostridium acetobutylicum ATCC 824|Fasta| | |
| - | | |
| - | |272563-g|Bac Clostridium difficile 630|Fasta| | |
| - | |367459-g|Bac Clostridium difficile QCD-32g58|Fasta| | |
| - | |386415-g|Bac Clostridium novyi NT|Fasta| | |
| - | |195103-g|Bac Clostridium perfringens ATCC 13124|Fasta| | |
| - | |289380-g|Bac Clostridium perfringens SM101|Fasta| | |
| - | |195102-g|Bac Clostridium perfringens str. 13|Fasta| | |
| - | |212717-g|Bac Clostridium tetani E88|Fasta| | |
| - | |203119-g|Bac Clostridium thermocellum ATCC 27405|Fasta| | |
| - | |167879-g|Bac Colwellia psychrerythraea 34H|Fasta| | |
| - | | |
| - | |257309-g|Bac Corynebacterium diphtheriae NCTC 13129|Fasta| | |
| - | |196164-g|Bac Corynebacterium efficiens YS-314|Fasta| | |
| - | |1718-g|Bac Corynebacterium glutamicum|Fasta| | |
| - | |196627-g|Bac Corynebacterium glutamicum ATCC 13032|Fasta| | |
| - | |306537-g|Bac Corynebacterium jeikeium K411|Fasta| | |
| - | |227377-g|Bac Coxiella burnetii RSA 493|Fasta| | |
| - | |269798-g|Bac Cytophaga hutchinsonii ATCC 33406|Fasta| | |
| - | |159087-g|Bac Dechloromonas aromatica RCB|Fasta| | |
| - | |243164-g|Bac Dehalococcoides ethenogenes 195|Fasta| | |
| - | | |
| - | |255470-g|Bac Dehalococcoides sp. CBDB1|Fasta| | |
| - | |319795-g|Bac Deinococcus geothermalis DSM 11300|Fasta| | |
| - | |243230-g|Bac Deinococcus radiodurans R1|Fasta| | |
| - | |138119-g|Bac Desulfitobacterium hafniense Y51|Fasta| | |
| - | |177439-g|Bac Desulfotalea psychrophila LSv54|Fasta| | |
| - | |207559-g|Bac Desulfovibrio desulfuricans G20|Fasta| | |
| - | |391774-g|Bac Desulfovibrio vulgaris subsp. vulgaris DP4|Fasta| | |
| - | |882-g|Bac Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough|Fasta| | |
| - | |269484-g|Bac Ehrlichia canis str. Jake|Fasta| | |
| - | | |
| - | |205920-g|Bac Ehrlichia chaffeensis str. Arkansas|Fasta| | |
| - | |302409-g|Bac Ehrlichia ruminantium str. Gardel|Fasta| | |
| - | |254945-g|Bac Ehrlichia ruminantium str. Welgevonden|Fasta| | |
| - | |226185-g|Bac Enterococcus faecalis V583|Fasta| | |
| - | |218491-g|Bac Erwinia carotovora subsp. atroseptica SCRI1043|Fasta| | |
| - | |314225-g|Bac Erythrobacter litoralis HTCC2594|Fasta| | |
| - | |362663-g|Bac Escherichia coli 536|Fasta| | |
| - | |405955-g|Bac Escherichia coli APEC O1|Fasta| | |
| - | |199310-g|Bac Escherichia coli CFT073|Fasta| | |
| - | | |
| - | |83333-g|Bac Escherichia coli K12|Fasta| | |
| - | |155864-g|Bac Escherichia coli O157:H7 EDL933|Fasta| | |
| - | |386585-g|Bac Escherichia coli O157:H7 str. Sakai|Fasta| | |
| - | |364106-g|Bac Escherichia coli UTI89|Fasta| | |
| - | |316407-g|Bac Escherichia coli W3110|Fasta| | |
| - | |376619-g|Bac Francisella tularensis subsp. holarctica LVS|Fasta| | |
| - | |393011-g|Bac Francisella tularensis subsp. holarctica OSU18|Fasta| | |
| - | |401614-g|Bac Francisella tularensis subsp. novicida U112|Fasta| | |
| - | |393115-g|Bac Francisella tularensis subsp. tularensis FSC198|Fasta| | |
| - | | |
| - | |177416-g|Bac Francisella tularensis subsp. tularensis SCHU S4|Fasta| | |
| - | |326424-g|Bac Frankia alni ACN14a|Fasta| | |
| - | |106370-g|Bac Frankia sp. CcI3|Fasta| | |
| - | |190304-g|Bac Fusobacterium nucleatum subsp. nucleatum ATCC 25586|Fasta| | |
| - | |235909-g|Bac Geobacillus kaustophilus HTA426|Fasta| | |
| - | |269799-g|Bac Geobacter metallireducens GS-15|Fasta| | |
| - | |243231-g|Bac Geobacter sulfurreducens PCA|Fasta| | |
| - | |251221-g|Bac Gloeobacter violaceus PCC 7421|Fasta| | |
| - | |290633-g|Bac Gluconobacter oxydans 621H|Fasta| | |
| - | | |
| - | |411154-g|Bac Gramella forsetii KT0803|Fasta| | |
| - | |391165-g|Bac Granulibacter bethesdensis CGDNIH1|Fasta| | |
| - | |233412-g|Bac Haemophilus ducreyi 35000HP|Fasta| | |
| - | |281310-g|Bac Haemophilus influenzae 86-028NP|Fasta| | |
| - | |71421-g|Bac Haemophilus influenzae Rd KW20|Fasta| | |
| - | |205914-g|Bac Haemophilus somnus 129PT|Fasta| | |
| - | |349521-g|Bac Hahella chejuensis KCTC 2396|Fasta| | |
| - | |349124-g|Bac Halorhodospira halophila SL1|Fasta| | |
| - | |382638-g|Bac Helicobacter acinonychis str. Sheeba|Fasta| | |
| - | | |
| - | |235279-g|Bac Helicobacter hepaticus ATCC 51449|Fasta| | |
| - | |85962-g|Bac Helicobacter pylori 26695|Fasta| | |
| - | |357544-g|Bac Helicobacter pylori HPAG1|Fasta| | |
| - | |85963-g|Bac Helicobacter pylori J99|Fasta| | |
| - | |228405-g|Bac Hyphomonas neptunium ATCC 15444|Fasta| | |
| - | |283942-g|Bac Idiomarina loihiensis L2TR|Fasta| | |
| - | |290400-g|Bac Jannaschia sp. CCS1|Fasta| | |
| - | |272621-g|Bac Lactobacillus acidophilus NCFM|Fasta| | |
| - | |387344-g|Bac Lactobacillus brevis ATCC 367|Fasta| | |
| - | | |
| - | |321967-g|Bac Lactobacillus casei ATCC 334|Fasta| | |
| - | |390333-g|Bac Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842|Fasta| | |
| - | |321956-g|Bac Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365|Fasta| | |
| - | |324831-g|Bac Lactobacillus gasseri ATCC 33323|Fasta| | |
| - | |257314-g|Bac Lactobacillus johnsonii NCC 533|Fasta| | |
| - | |220668-g|Bac Lactobacillus plantarum WCFS1|Fasta| | |
| - | |314315-g|Bac Lactobacillus sakei subsp. sakei 23K|Fasta| | |
| - | |362948-g|Bac Lactobacillus salivarius subsp. salivarius UCC118|Fasta| | |
| - | |416870-g|Bac Lactococcus lactis subsp. cremoris MG1363|Fasta| | |
| - | | |
| - | |272622-g|Bac Lactococcus lactis subsp. cremoris SK11|Fasta| | |
| - | |272623-g|Bac Lactococcus lactis subsp. lactis Il1403|Fasta| | |
| - | |363253-g|Bac Lawsonia intracellularis PHE/MN1-00|Fasta| | |
| - | |297245-g|Bac Legionella pneumophila str. Lens|Fasta| | |
| - | |297246-g|Bac Legionella pneumophila str. Paris|Fasta| | |
| - | |272624-g|Bac Legionella pneumophila subsp. pneumophila str. Philadelphia 1|Fasta| | |
| - | |281090-g|Bac Leifsonia xyli subsp. xyli str. CTCB07|Fasta| | |
| - | |355277-g|Bac Leptospira borgpetersenii serovar Hardjo-bovis JB197|Fasta| | |
| - | |355276-g|Bac Leptospira borgpetersenii serovar Hardjo-bovis L550|Fasta| | |
| - | | |
| - | |267671-g|Bac Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130|Fasta| | |
| - | |189518-g|Bac Leptospira interrogans serovar Lai str. 56601|Fasta| | |
| - | |203120-g|Bac Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293|Fasta| | |
| - | |272626-g|Bac Listeria innocua Clip11262|Fasta| | |
| - | |169963-g|Bac Listeria monocytogenes EGD-e|Fasta| | |
| - | |265669-g|Bac Listeria monocytogenes str. 4b F2365|Fasta| | |
| - | |386043-g|Bac Listeria welshimeri serovar 6b str. SLCC5334|Fasta| | |
| - | |156889-g|Bac Magnetococcus sp. MC-1|Fasta| | |
| - | |342108-g|Bac Magnetospirillum magneticum AMB-1|Fasta| | |
| - | | |
| - | |221988-g|Bac Mannheimia succiniciproducens MBEL55E|Fasta| | |
| - | |394221-g|Bac Maricaulis maris MCS10|Fasta| | |
| - | |351348-g|Bac Marinobacter aquaeolei VT8|Fasta| | |
| - | |265311-g|Bac Mesoplasma florum L1|Fasta| | |
| - | |266835-g|Bac Mesorhizobium loti MAFF303099|Fasta| | |
| - | |266779-g|Bac Mesorhizobium sp. BNC1|Fasta| | |
| - | |420662-g|Bac Methylibium petroleiphilum PM1|Fasta| | |
| - | |265072-g|Bac Methylobacillus flagellatus KT|Fasta| | |
| - | |243233-g|Bac Methylococcus capsulatus str. Bath|Fasta| | |
| - | | |
| - | |264732-g|Bac Moorella thermoacetica ATCC 39073|Fasta| | |
| - | |243243-g|Bac Mycobacterium avium 104|Fasta| | |
| - | |262316-g|Bac Mycobacterium avium subsp. paratuberculosis K-10|Fasta| | |
| - | |233413-g|Bac Mycobacterium bovis AF2122/97|Fasta| | |
| - | |410289-g|Bac Mycobacterium bovis BCG str. Pasteur 1173P2|Fasta| | |
| - | |272631-g|Bac Mycobacterium leprae TN|Fasta| | |
| - | |246196-g|Bac Mycobacterium smegmatis str. MC2 155|Fasta| | |
| - | |164757-g|Bac Mycobacterium sp. JLS|Fasta| | |
| - | |189918-g|Bac Mycobacterium sp. KMS|Fasta| | |
| - | | |
| - | |164756-g|Bac Mycobacterium sp. MCS|Fasta| | |
| - | |83331-g|Bac Mycobacterium tuberculosis CDC1551|Fasta| | |
| - | |336982-g|Bac Mycobacterium tuberculosis F11|Fasta| | |
| - | |83332-g|Bac Mycobacterium tuberculosis H37Rv|Fasta| | |
| - | |362242-g|Bac Mycobacterium ulcerans Agy99|Fasta| | |
| - | |350058-g|Bac Mycobacterium vanbaalenii PYR-1|Fasta| | |
| - | |340047-g|Bac Mycoplasma capricolum subsp. capricolum ATCC 27343|Fasta| | |
| - | |233150-g|Bac Mycoplasma gallisepticum R|Fasta| | |
| - | |243273-g|Bac Mycoplasma genitalium G37|Fasta| | |
| - | | |
| - | |295358-g|Bac Mycoplasma hyopneumoniae 232|Fasta| | |
| - | |262722-g|Bac Mycoplasma hyopneumoniae 7448|Fasta| | |
| - | |262719-g|Bac Mycoplasma hyopneumoniae J|Fasta| | |
| - | |267748-g|Bac Mycoplasma mobile 163K|Fasta| | |
| - | |272632-g|Bac Mycoplasma mycoides subsp. mycoides SC str. PG1|Fasta| | |
| - | |272633-g|Bac Mycoplasma penetrans HF-2|Fasta| | |
| - | |272634-g|Bac Mycoplasma pneumoniae M129|Fasta| | |
| - | |272635-g|Bac Mycoplasma pulmonis UAB CTIP|Fasta| | |
| - | |262723-g|Bac Mycoplasma synoviae 53|Fasta| | |
| - | | |
| - | |246197-g|Bac Myxococcus xanthus DK 1622|Fasta| | |
| - | |242231-g|Bac Neisseria gonorrhoeae FA 1090|Fasta| | |
| - | |272831-g|Bac Neisseria meningitidis FAM18|Fasta| | |
| - | |122586-g|Bac Neisseria meningitidis MC58|Fasta| | |
| - | |122587-g|Bac Neisseria meningitidis Z2491|Fasta| | |
| - | |222891-g|Bac Neorickettsia sennetsu str. Miyayama|Fasta| | |
| - | |323097-g|Bac Nitrobacter hamburgensis X14|Fasta| | |
| - | |323098-g|Bac Nitrobacter winogradskyi Nb-255|Fasta| | |
| - | |323261-g|Bac Nitrosococcus oceani ATCC 19707|Fasta| | |
| - | | |
| - | |228410-g|Bac Nitrosomonas europaea ATCC 19718|Fasta| | |
| - | |335283-g|Bac Nitrosomonas eutropha C91|Fasta| | |
| - | |323848-g|Bac Nitrosospira multiformis ATCC 25196|Fasta| | |
| - | |247156-g|Bac Nocardia farcinica IFM 10152|Fasta| | |
| - | |196162-g|Bac Nocardioides sp. JS614|Fasta| | |
| - | |103690-g|Bac Nostoc sp. PCC 7120|Fasta| | |
| - | |279238-g|Bac Novosphingobium aromaticivorans DSM 12444|Fasta| | |
| - | |221109-g|Bac Oceanobacillus iheyensis HTE831|Fasta| | |
| - | |203123-g|Bac Oenococcus oeni PSU-1|Fasta| | |
| - | | |
| - | |262768-g|Bac Onion yellows phytoplasma OY-M|Fasta| | |
| - | |318586-g|Bac Paracoccus denitrificans PD1222|Fasta| | |
| - | |272843-g|Bac Pasteurella multocida subsp. multocida str. Pm70|Fasta| | |
| - | |278197-g|Bac Pediococcus pentosaceus ATCC 25745|Fasta| | |
| - | |338963-g|Bac Pelobacter carbinolicus DSM 2380|Fasta| | |
| - | |319225-g|Bac Pelodictyon luteolum DSM 273|Fasta| | |
| - | |74109-g|Bac Photobacterium profundum|Fasta| | |
| - | |243265-g|Bac Photorhabdus luminescens subsp. laumondii TTO1|Fasta| | |
| - | |365044-g|Bac Polaromonas naphthalenivorans CJ2|Fasta| | |
| - | | |
| - | |296591-g|Bac Polaromonas sp. JS666|Fasta| | |
| - | |242619-g|Bac Porphyromonas gingivalis W83|Fasta| | |
| - | |146891-g|Bac Prochlorococcus marinus str. AS9601|Fasta| | |
| - | |167546-g|Bac Prochlorococcus marinus str. MIT 9301|Fasta| | |
| - | |59922-g|Bac Prochlorococcus marinus str. MIT 9303|Fasta| | |
| - | |74546-g|Bac Prochlorococcus marinus str. MIT 9312|Fasta| | |
| - | |74547-g|Bac Prochlorococcus marinus str. MIT 9313|Fasta| | |
| - | |167542-g|Bac Prochlorococcus marinus str. MIT 9515|Fasta| | |
| - | |167555-g|Bac Prochlorococcus marinus str. NATL1A|Fasta| | |
| - | | |
| - | |59920-g|Bac Prochlorococcus marinus str. NATL2A|Fasta| | |
| - | |167539-g|Bac Prochlorococcus marinus subsp. marinus str. CCMP1375|Fasta| | |
| - | |59919-g|Bac Prochlorococcus marinus subsp. pastoris str. CCMP1986|Fasta| | |
| - | |267747-g|Bac Propionibacterium acnes KPA171202|Fasta| | |
| - | |342610-g|Bac Pseudoalteromonas atlantica T6c|Fasta| | |
| - | |326442-g|Bac Pseudoalteromonas haloplanktis TAC125|Fasta| | |
| - | |286-g|Bac Pseudomonas|Fasta| | |
| - | |208964-g|Bac Pseudomonas aeruginosa PAO1|Fasta| | |
| - | |208963-g|Bac Pseudomonas aeruginosa UCBPP-PA14|Fasta| | |
| - | | |
| - | |220664-g|Bac Pseudomonas fluorescens Pf-5|Fasta| | |
| - | |205922-g|Bac Pseudomonas fluorescens PfO-1|Fasta| | |
| - | |160488-g|Bac Pseudomonas putida KT2440|Fasta| | |
| - | |264730-g|Bac Pseudomonas syringae pv. phaseolicola 1448A|Fasta| | |
| - | |205918-g|Bac Pseudomonas syringae pv. syringae B728a|Fasta| | |
| - | |223283-g|Bac Pseudomonas syringae pv. tomato str. DC3000|Fasta| | |
| - | |259536-g|Bac Psychrobacter arcticus 273-4|Fasta| | |
| - | |335284-g|Bac Psychrobacter cryohalolentis K5|Fasta| | |
| - | |357804-g|Bac Psychromonas ingrahamii 37|Fasta| | |
| - | | |
| - | |381666-g|Bac Ralstonia eutropha H16|Fasta| | |
| - | |264198-g|Bac Ralstonia eutropha JMP134|Fasta| | |
| - | |266264-g|Bac Ralstonia metallidurans CH34|Fasta| | |
| - | |305-g|Bac Ralstonia solanacearum|Fasta| | |
| - | |347834-g|Bac Rhizobium etli CFN 42|Fasta| | |
| - | |216596-g|Bac Rhizobium leguminosarum bv. viciae 3841|Fasta| | |
| - | |272943-g|Bac Rhodobacter sphaeroides 2.4.1|Fasta| | |
| - | |349101-g|Bac Rhodobacter sphaeroides ATCC 17029|Fasta| | |
| - | |101510-g|Bac Rhodococcus sp. RHA1|Fasta| | |
| - | | |
| - | |338969-g|Bac Rhodoferax ferrireducens T118|Fasta| | |
| - | |243090-g|Bac Rhodopirellula baltica SH 1|Fasta| | |
| - | |316055-g|Bac Rhodopseudomonas palustris BisA53|Fasta| | |
| - | |316056-g|Bac Rhodopseudomonas palustris BisB18|Fasta| | |
| - | |316057-g|Bac Rhodopseudomonas palustris BisB5|Fasta| | |
| - | |258594-g|Bac Rhodopseudomonas palustris CGA009|Fasta| | |
| - | |316058-g|Bac Rhodopseudomonas palustris HaA2|Fasta| | |
| - | |269796-g|Bac Rhodospirillum rubrum ATCC 11170|Fasta| | |
| - | |336407-g|Bac Rickettsia bellii RML369-C|Fasta| | |
| - | | |
| - | |272944-g|Bac Rickettsia conorii str. Malish 7|Fasta| | |
| - | |315456-g|Bac Rickettsia felis URRWXCal2|Fasta| | |
| - | |272947-g|Bac Rickettsia prowazekii str. Madrid E|Fasta| | |
| - | |257363-g|Bac Rickettsia typhi str. Wilmington|Fasta| | |
| - | |375451-g|Bac Roseobacter denitrificans OCh 114|Fasta| | |
| - | |266117-g|Bac Rubrobacter xylanophilus DSM 9941|Fasta| | |
| - | |203122-g|Bac Saccharophagus degradans 2-40|Fasta| | |
| - | |309807-g|Bac Salinibacter ruber DSM 13855|Fasta| | |
| - | |321314-g|Bac Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67|Fasta| | |
| - | | |
| - | |295319-g|Bac Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150|Fasta| | |
| - | |209261-g|Bac Salmonella enterica subsp. enterica serovar Typhi Ty2|Fasta| | |
| - | |220341-g|Bac Salmonella enterica subsp. enterica serovar Typhi str. CT18|Fasta| | |
| - | |99287-g|Bac Salmonella typhimurium LT2|Fasta| | |
| - | |326297-g|Bac Shewanella amazonensis SB2B|Fasta| | |
| - | |318161-g|Bac Shewanella denitrificans OS217|Fasta| | |
| - | |318167-g|Bac Shewanella frigidimarina NCIMB 400|Fasta| | |
| - | |211586-g|Bac Shewanella oneidensis MR-1|Fasta| | |
| - | |94122-g|Bac Shewanella sp. ANA-3|Fasta| | |
| - | | |
| - | |60480-g|Bac Shewanella sp. MR-4|Fasta| | |
| - | |60481-g|Bac Shewanella sp. MR-7|Fasta| | |
| - | |351745-g|Bac Shewanella sp. W3-18-1|Fasta| | |
| - | |300268-g|Bac Shigella boydii Sb227|Fasta| | |
| - | |300267-g|Bac Shigella dysenteriae Sd197|Fasta| | |
| - | |198215-g|Bac Shigella flexneri 2a str. 2457T|Fasta| | |
| - | |198214-g|Bac Shigella flexneri 2a str. 301|Fasta| | |
| - | |373384-g|Bac Shigella flexneri 5 str. 8401|Fasta| | |
| - | |300269-g|Bac Shigella sonnei Ss046|Fasta| | |
| - | | |
| - | |246200-g|Bac Silicibacter pomeroyi DSS-3|Fasta| | |
| - | |292414-g|Bac Silicibacter sp. TM1040|Fasta| | |
| - | |266834-g|Bac Sinorhizobium meliloti 1021|Fasta| | |
| - | |343509-g|Bac Sodalis glossinidius str. 'morsitans'|Fasta| | |
| - | |234267-g|Bac Solibacter usitatus Ellin6076|Fasta| | |
| - | |317655-g|Bac Sphingopyxis alaskensis RB2256|Fasta| | |
| - | |273036-g|Bac Staphylococcus aureus RF122|Fasta| | |
| - | |93062-g|Bac Staphylococcus aureus subsp. aureus COL|Fasta| | |
| - | |282458-g|Bac Staphylococcus aureus subsp. aureus MRSA252|Fasta| | |
| - | | |
| - | |282459-g|Bac Staphylococcus aureus subsp. aureus MSSA476|Fasta| | |
| - | |196620-g|Bac Staphylococcus aureus subsp. aureus MW2|Fasta| | |
| - | |158878-g|Bac Staphylococcus aureus subsp. aureus Mu50|Fasta| | |
| - | |158879-g|Bac Staphylococcus aureus subsp. aureus N315|Fasta| | |
| - | |93061-g|Bac Staphylococcus aureus subsp. aureus NCTC 8325|Fasta| | |
| - | |367830-g|Bac Staphylococcus aureus subsp. aureus USA300|Fasta| | |
| - | |176280-g|Bac Staphylococcus epidermidis ATCC 12228|Fasta| | |
| - | |176279-g|Bac Staphylococcus epidermidis RP62A|Fasta| | |
| - | |279808-g|Bac Staphylococcus haemolyticus JCSC1435|Fasta| | |
| - | | |
| - | |342451-g|Bac Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305|Fasta| | |
| - | |208435-g|Bac Streptococcus agalactiae 2603V/R|Fasta| | |
| - | |205921-g|Bac Streptococcus agalactiae A909|Fasta| | |
| - | |211110-g|Bac Streptococcus agalactiae NEM316|Fasta| | |
| - | |210007-g|Bac Streptococcus mutans UA159|Fasta| | |
| - | |373153-g|Bac Streptococcus pneumoniae D39|Fasta| | |
| - | |171101-g|Bac Streptococcus pneumoniae R6|Fasta| | |
| - | |170187-g|Bac Streptococcus pneumoniae TIGR4|Fasta| | |
| - | |160490-g|Bac Streptococcus pyogenes M1 GAS|Fasta| | |
| - | | |
| - | |370552-g|Bac Streptococcus pyogenes MGAS10270|Fasta| | |
| - | |286636-g|Bac Streptococcus pyogenes MGAS10394|Fasta| | |
| - | |370554-g|Bac Streptococcus pyogenes MGAS10750|Fasta| | |
| - | |370553-g|Bac Streptococcus pyogenes MGAS2096|Fasta| | |
| - | |198466-g|Bac Streptococcus pyogenes MGAS315|Fasta| | |
| - | |293653-g|Bac Streptococcus pyogenes MGAS5005|Fasta| | |
| - | |319701-g|Bac Streptococcus pyogenes MGAS6180|Fasta| | |
| - | |186103-g|Bac Streptococcus pyogenes MGAS8232|Fasta| | |
| - | |370551-g|Bac Streptococcus pyogenes MGAS9429|Fasta| | |
| - | | |
| - | |193567-g|Bac Streptococcus pyogenes SSI-1|Fasta| | |
| - | |160491-g|Bac Streptococcus pyogenes str. Manfredo|Fasta| | |
| - | |388919-g|Bac Streptococcus sanguinis SK36|Fasta| | |
| - | |299768-g|Bac Streptococcus thermophilus CNRZ1066|Fasta| | |
| - | |322159-g|Bac Streptococcus thermophilus LMD-9|Fasta| | |
| - | |264199-g|Bac Streptococcus thermophilus LMG 18311|Fasta| | |
| - | |227882-g|Bac Streptomyces avermitilis MA-4680|Fasta| | |
| - | |1902-g|Bac Streptomyces coelicolor|Fasta| | |
| - | |292459-g|Bac Symbiobacterium thermophilum IAM 14863|Fasta| | |
| - | | |
| - | |269084-g|Bac Synechococcus elongatus PCC 6301|Fasta| | |
| - | |1140-g|Bac Synechococcus elongatus PCC 7942|Fasta| | |
| - | |64471-g|Bac Synechococcus sp. CC9311|Fasta| | |
| - | |110662-g|Bac Synechococcus sp. CC9605|Fasta| | |
| - | |316279-g|Bac Synechococcus sp. CC9902|Fasta| | |
| - | |321332-g|Bac Synechococcus sp. JA-2-3B'a(2-13)|Fasta| | |
| - | |321327-g|Bac Synechococcus sp. JA-3-3Ab|Fasta| | |
| - | |84588-g|Bac Synechococcus sp. WH 8102|Fasta| | |
| - | |1148-g|Bac Synechocystis sp. PCC 6803|Fasta| | |
| - | | |
| - | |335543-g|Bac Syntrophobacter fumaroxidans MPOB|Fasta| | |
| - | |335541-g|Bac Syntrophomonas wolfei subsp. wolfei str. Goettingen|Fasta| | |
| - | |56780-g|Bac Syntrophus aciditrophicus SB|Fasta| | |
| - | |273068-g|Bac Thermoanaerobacter tengcongensis MB4|Fasta| | |
| - | |269800-g|Bac Thermobifida fusca YX|Fasta| | |
| - | |197221-g|Bac Thermosynechococcus elongatus BP-1|Fasta| | |
| - | |243274-g|Bac Thermotoga maritima MSB8|Fasta| | |
| - | |262724-g|Bac Thermus thermophilus HB27|Fasta| | |
| - | |300852-g|Bac Thermus thermophilus HB8|Fasta| | |
| - | | |
| - | |292415-g|Bac Thiobacillus denitrificans ATCC 25259|Fasta| | |
| - | |317025-g|Bac Thiomicrospira crunogena XCL-2|Fasta| | |
| - | |326298-g|Bac Thiomicrospira denitrificans ATCC 33889|Fasta| | |
| - | |243275-g|Bac Treponema denticola ATCC 35405|Fasta| | |
| - | |243276-g|Bac Treponema pallidum subsp. pallidum str. Nichols|Fasta| | |
| - | |203124-g|Bac Trichodesmium erythraeum IMS101|Fasta| | |
| - | |218496-g|Bac Tropheryma whipplei TW08/27|Fasta| | |
| - | |203267-g|Bac Tropheryma whipplei str. Twist|Fasta| | |
| - | |273119-g|Bac Ureaplasma parvum serovar 3 str. ATCC 700970|Fasta| | |
| - | | |
| - | |391735-g|Bac Verminephrobacter eiseniae EF01-2|Fasta| | |
| - | |243277-g|Bac Vibrio cholerae O1 biovar eltor str. N16961|Fasta| | |
| - | |312309-g|Bac Vibrio fischeri ES114|Fasta| | |
| - | |223926-g|Bac Vibrio parahaemolyticus RIMD 2210633|Fasta| | |
| - | |216895-g|Bac Vibrio vulnificus CMCP6|Fasta| | |
| - | |196600-g|Bac Vibrio vulnificus YJ016|Fasta| | |
| - | |36870-g|Bac Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis|Fasta| | |
| - | |163164-g|Bac Wolbachia endosymbiont of Drosophila melanogaster|Fasta| | |
| - | |292805-g|Bac Wolbachia endosymbiont strain TRS of Brugia malayi|Fasta| | |
| - | | |
| - | |273121-g|Bac Wolinella succinogenes DSM 1740|Fasta| | |
| - | |190486-g|Bac Xanthomonas axonopodis pv. citri str. 306|Fasta| | |
| - | |314565-g|Bac Xanthomonas campestris pv. campestris str. 8004|Fasta| | |
| - | |190485-g|Bac Xanthomonas campestris pv. campestris str. ATCC 33913|Fasta| | |
| - | |341-g|Bac Xanthomonas campestris pv. vesicatoria|Fasta| | |
| - | |291331-g|Bac Xanthomonas oryzae pv. oryzae KACC10331|Fasta| | |
| - | |342109-g|Bac Xanthomonas oryzae pv. oryzae MAFF 311018|Fasta| | |
| - | |160492-g|Bac Xylella fastidiosa 9a5c|Fasta| | |
| - | |183190-g|Bac Xylella fastidiosa Temecula1|Fasta| | |
| - | | |
| - | |393305-g|Bac Yersinia enterocolitica subsp. enterocolitica 8081|Fasta| | |
| - | |360102-g|Bac Yersinia pestis Antiqua|Fasta| | |
| - | |214092-g|Bac Yersinia pestis CO92|Fasta| | |
| - | |187410-g|Bac Yersinia pestis KIM|Fasta| | |
| - | |377628-g|Bac Yersinia pestis Nepal516|Fasta| | |
| - | |229193-g|Bac Yersinia pestis biovar Microtus str. 91001|Fasta| | |
| - | |273123-g|Bac Yersinia pseudotuberculosis IP 32953|Fasta| | |
| - | |264203-g|Bac Zymomonas mobilis subsp. mobilis ZM4|Fasta| | |
