about:news [2013/05/21 16:32]
wli (172.22.69.249) |
about:news [2013/08/29 11:02] (current)
wli (172.22.69.249) |
| | ====== News ====== | | ====== News ====== |
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| | + | ==== Thursday 29th August 2013 ==== |
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| | + | The FASTA services ([[services:sss:fasta_rest|FASTA (REST)]] & [[services:sss:fasta_soap|FASTA (SOAP)]]) have been updated to use FASTA version 36.3.6c. |
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| | + | ==== Wednesday 14th August 2013 ==== |
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| | + | The FASTA services ([[services:sss:fasta_rest|FASTA (REST)]] & [[services:sss:fasta_soap|FASTA (SOAP)]]) have been updated to use FASTA version 36.3.6b. |
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| | + | The PROSITE Scan services ([[:services:pfa:ps_scan_rest|PROSITE Scan (REST)]] & [[:services:pfa:ps_scan_soap|PROSITE Scan (SOAP)]]) have been updated to use ps_scan-1.79.1. |
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| | + | The following EMBOSS tools services have been updated to use EMBOSS-6.6.0: |
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| | + | - [[:services:psa:EMBOSS matcher (REST)]] & [[:services:psa:EMBOSS matcher (SOAP)]] \\ |
| | + | - [[:services:psa:EMBOSS needle (REST)]] & [[:services:psa:EMBOSS needle (SOAP)]] \\ |
| | + | - [[:services:psa:EMBOSS stretcher (REST)]] & [[:services:psa:EMBOSS stretcher (SOAP)]] \\ |
| | + | - [[:services:psa:EMBOSS water (REST)]] & [[:services:psa:EMBOSS water (SOAP)]] \\ |
| | + | - [[:services:sfc:EMBOSS seqret (REST)]] & [[:services:sfc:EMBOSS seqret (SOAP)]] \\ |
| | + | - [[:services:seqstats:EMBOSS cpgplot (REST)]] & [[:services:seqstats:EMBOSS cpgplot (SOAP)]] \\ |
| | + | - [[:services:seqstats:EMBOSS newcpgreport (REST)]] & [[:services:seqstats:EMBOSS newcpgreport (SOAP)]] \\ |
| | + | - [[:services:seqstats:EMBOSS isochore (REST)]] & [[:services:seqstats:EMBOSS isochore (SOAP)]] \\ |
| | + | - [[:services:seqstats:EMBOSS pepinfo (REST)]] & [[:services:seqstats:EMBOSS pepinfo (SOAP)]] \\ |
| | + | - [[:services:seqstats:EMBOSS pepstats (REST)]] & [[:services:seqstats:EMBOSS pepstats (SOAP)]] \\ |
| | + | - [[:services:seqstats:EMBOSS pepwindow (REST)]] & [[:services:seqstats:EMBOSS pepwindow (SOAP)]]\\ |
| | + | - [[:services:st:EMBOSS transeq (REST)]] & [[:services:st:EMBOSS transeq (SOAP)]] \\ |
| | + | - [[:services:st:EMBOSS sixpack (REST)]] & [[:services:st:EMBOSS sixpack (SOAP)]] \\ |
| | + | - [[:services:st:EMBOSS backtranseq (REST)]] & [[:services:st:EMBOSS backtranseq (SOAP)]] \\ |
| | + | - [[:services:st:EMBOSS backtranambig (REST)]] & [[:services:st:EMBOSS backtranambig (SOAP)]] \\ |
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| | + | ==== Tuesday 9th July 2013 ==== |
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| | + | The following services have been updated to use FASTA version 36.3.6. |
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| | + | - The FASTA services ([[services:sss:fasta_rest|FASTA (REST)]] & [[services:sss:fasta_soap|FASTA (SOAP)]]) \\ |
| | + | - The FASTM services ([[services:sss:fastm_rest|FASTM (REST)]] & [[services:sss:fastm_soap|FASTM (SOAP)]]) & \\ |
| | + | - The lalign services ([[services:psa:lalign_rest|lalign (REST)]] & [[services:psa:lalign_soap|lalign (SOAP)]]). \\ |
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| | + | ==== Wednesday 26th June 2013 ==== |
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| | + | The Clustal Omega services ([[services:msa:clustalo_rest|Clustal Omega (REST)]] & [[services:msa:clustalo_soap|Clustal Omega (SOAP)]]) have been updated to use Clustal Omega version 1.2.0. |
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| | + | ==== Monday 10th June 2013 ==== |
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| | + | The Clustal Omega services ([[services:msa:clustalo_rest|Clustal Omega (REST)]] & [[services:msa:clustalo_soap|Clustal Omega (SOAP)]]) have been updated to use Clustal Omega version 1.1.1. |
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| | + | ==== Wednesday 29th May 2013 ==== |
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| | + | The HGVbase database has been retired from the Sequence Similarity Search (SSS) services. To continue access to the relevant data, please visit\\ |
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| | + | - GWAS Central: https://www.gwascentral.org/ \\ |
| | + | - 1000 Genomes: http://www.1000genomes.org/ \\ |
| | + | - DGVa : http://www.ebi.ac.uk/dgva/ \\ |
| | + | - Ensembl: http://www.ensembl.org/ \\ |
| | + | - EGA: http://www.ebi.ac.uk/ega/ \\ |
| | + | - LRG: http://www.lrg-sequence.org/ \\ |
| | + | - NCBI dbSNP: http://www.ncbi.nlm.nih.gov/SNP/ \\ |
| | + | - Archived data on the FTP site: ftp://ftp.ebi.ac.uk/pub/databases/variantdbs/hgbase/ \\ |
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| | ==== Tuesday 21st May 2013 ==== | | ==== Tuesday 21st May 2013 ==== |
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| - | The phylogenetic tree and the percentage identity matrix (PIM) are available from the web services of [[services:msa:clustalo_rest|Clustal Omega]], [[services:msa:clustalw2_rest|Clustal W2]], [[services:msa:kalign_rest|Kalign]], [[services:msa:mafft_rest|MAFFT]], [[services:msa:muscle_rest|MUSCLE]] and [[services:msa:tcoffee_rest|T-Coffee]]. | + | A neighbour-joining phylogenetic tree and a percentage identity matrix (PIM) are available from the web services of [[:services:msa:clustalo_soap|Clustal Omega]], [[:services:msa:clustalw2_soap|ClustalW2]], [[:services:msa:kalign_soap|Kalign]], [[:services:msa:mafft_soap|MAFFT]], [[:services:msa:muscle_soap|MUSCLE]] and [[:services:msa:tcoffee_soap|T-Coffee]]. |
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| | ==== Tuesday 15th May 2013 ==== | | ==== Tuesday 15th May 2013 ==== |
