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about:news [2013/03/18 16:43]
wli (172.22.69.114)
about:news [2015/08/11 14:56] (current)
wli (172.22.69.229)
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====== News ====== ====== News ======
-==== 18th March 2013 ==== 
-The new web services for FingerPRINTScan, Pratt and PROSITE Scan are available to the public: +==== Tuesday 11th August 2015 ====
-  * [[:services:pfa:FingerPRINTScan (REST)]] +
-  * [[:services:pfa:FingerPRINTScan (SOAP)]] +
-  * [[:services:pfa:Pratt (REST)]] +
-  * [[:services:pfa:Pratt (SOAP)]] +
-  * [[:services:pfa:ps_scan_rest|PROSTIE Scan (REST)]] +
-  * [[:services:pfa:ps_scan_soap|PROSTIE Scan (SOAP)]]+
-==== 8th March 2013 ====+The FASTA services ([[services:sss:fasta_rest|FASTA (REST)]] & [[services:sss:fasta_soap|FASTA (SOAP)]]) and the lalign ([[services:psa:lalign_rest|lalign (REST)]] & [[services:psa:lalign_soap|lalign (SOAP)]]) services have been updated to use FASTA version 36.3.7b Jun, 2015.
-The final release of the International Protein Index (IPI) database was produced in 2011, and has been replaced by equivalent data available from UniProt (see http://www.uniprot.org/news/2011/06/28/release and http://www.uniprot.org/taxonomy/complete-proteomes). To allow users to transition from Genome Reviews to the new resources the IPI data has continued to be available in [[http://www.ebi.ac.uk/Tools/dbfetch/|dbfetch]], [[:services:dbfetch|WSDbfetch]] and [[http://srs.ebi.ac.uk/|SRS@EMBL-EBI]]. On Monday 15th April 2013 the IPI databases will be removed from the dbfetch, WSDbfetch and SRS@EMBL-EBI services. The underlying data has been archived and will remain available from the EMBL-EBI FTP site under ftp://ftp.ebi.ac.uk/pub/databases/IPI/.+==== Thursday 30th July 2015 ====
-==== 4th March 2013 ====+The InterProScan 5 services ([[services:pfa:iprscan5_rest|InterProScan 5 (REST)]] & [[services:pfa:iprscan5_soap|InterProScan 5 (SOAP)]]) have been updated to use InterProScan v5.14-53.0.
-The International Protein Index (IPI) database is retired from the Sequence Similarity Search ([[:services:sss:fasta_soap|FASTA]], [[:services:sss:fastm_soap|FASTM]], [[:services:sss:ncbi_blast_soap|NCBI BLAST]], [[:services:sss:psiblast_soap|PSI-BLAST]], [[:services:sss:psisearch_soap|PSI-Search]] & [[:services:sss:wu_blast_soap|WU-BLAST]]). Equivalent data is available from UniProt (see http://www.uniprot.org/news/2011/06/28/release and http://www.uniprot.org/taxonomy/complete-proteomes). For queries relating to this database retirement please contact us via [[http://www.ebi.ac.uk/support/|EMBL-EBI Support]].+==== Tuesday 9th June 2015 ====
-The Genome Reviews databases which were available in [[http://www.ebi.ac.uk/Tools/dbfetch/|dbfetch]], [[:services:dbfetch|WSDbfetch]] and [[http://srs.ebi.ac.uk/|SRS@EMBL-EBI]], have now been retired. The data for Genome Reviews, which was used by these servcices, has been archived and remains available from the EMBL-EBI FTP site under [[ftp://ftp.ebi.ac.uk/pub/databases/genome_reviews/]] and [[ftp://ftp.ebi.ac.uk/pub/databases/integr8/]].+The InterProScan 5 services ([[services:pfa:iprscan5_rest|InterProScan 5 (REST)]] & [[services:pfa:iprscan5_soap|InterProScan 5 (SOAP)]]) have been updated to use InterProScan v5.13-52.0.
-==== 25th February 2013 ====+==== Wednesday 3rd June 2015 ====
-The FASTA service against proteomes is retired. To continue accessing the complete proteome data, please visit [[http://www.uniprot.org/taxonomy/complete-proteomes|UniProt Complete and Reference Proteomes]], [[http://www.ensembl.org/|Ensembl]], [[http://www.ensemblgenomes.org/|Ensembl Genomes]] or use the [[:services:sss:wu_blast_soap|WU-BLAST]] web service to search the Ensembl Genomes sequence databases. For queries relating to this data retirement please contact us via [[http://www.ebi.ac.uk/support/|EMBL-EBI Support]].+The PfamScan services ([[services:pfa:pfamscan_rest|PfamScan (REST)]] & [[services:pfa:pfamscan_soap|PfamScan (SOAP)]]) have been updated to use Pfam v28.0 and PfamScan v1.5.
-==== 20th February 2013 ====+==== Tuesday 13th May 2015 ====
-The WSCensor service has been retired. The replacement services: [[:services:so:CENSOR (REST)]] and [[:services:so:CENSOR (SOAP)]] should be used instead.+The [[http://www.ebi.ac.uk/Tools/webservices/services/eb-eye|EB-eye (SOAP)]] interface will be phased out at the end of December 2015. We recommend users migrate to the [[http://www.ebi.ac.uk/Tools/webservices/services/eb-eye_rest|EB-eye (REST)]] interface. If you have any questions/concerns please contact the [[http://www.ebi.ac.uk/support/index.php?query=WebServices|EMBL-EBI Support]].
-==== 15th February 2013 ====+==== Tuesday 5th May 2015 ====
-The final releases of the [[http://www.ebi.ac.uk/GenomeReviews/|Genome Reviews]] databases were produced in 2011, and have been replaced by data available from [[http://www.ensembl.org/|Ensembl]] and [[http://www.ensemblgenomes.org/|Ensembl Genomes]]. To allow users to transition from Genome Reviews to the new resources the Genome Reviews data has continued to be available in [[http://www.ebi.ac.uk/Tools/dbfetch/|dbfetch]], [[:services:dbfetch|WSDbfetch]] and [[http://srs.ebi.ac.uk/|SRS@EMBL-EBI]]. On Monday 4th March 2013 the Genome Reviews, Genome Reviews Gene Sets and Genome Reviews Transcript Sets databases will be removed from the dbfetch, WSDbfetch and SRS@EMBL-EBI services. The underlying data has been archived and will remain available from the EMBL-EBI FTP site under [[ftp://ftp.ebi.ac.uk/pub/databases/genome_reviews/]] and [[ftp://ftp.ebi.ac.uk/pub/databases/integr8/]].+The InterProScan 5 services ([[services:pfa:iprscan5_rest|InterProScan 5 (REST)]] & [[services:pfa:iprscan5_soap|InterProScan 5 (SOAP)]]) have been updated to use InterProScan v5.11-51.0.
-==== 13th February 2013 ====+==== Wednesday 25th February 2015 ====
-The International Protein Index (IPI) database will be retired from the Sequence Similarity Search ([[:services:sss:fasta_soap|FASTA]], [[:services:sss:fastm_soap|FASTM]], [[:services:sss:ncbi_blast_soap|NCBI BLAST]], [[:services:sss:psiblast_soap|PSI-BLAST]], [[:services:sss:psisearch_soap|PSI-Search]] & [[:services:sss:wu_blast_soap|WU-BLAST]]) services on 27/02/2013. Equivalent data is available from UniProt (see http://www.uniprot.org/news/2011/06/28/release and http://www.uniprot.org/taxonomy/complete-proteomes). For queries relating to this database retirement please contact us via [[http://www.ebi.ac.uk/support/|EMBL-EBI Support]].+The InterProScan 5 services ([[services:pfa:iprscan5_rest|InterProScan 5 (REST)]] & [[services:pfa:iprscan5_soap|InterProScan 5 (SOAP)]]) have been updated to use InterProScan v5.10-50.0.
-==== 11th February 2013 ====+==== Monday 9th February 2015 ====
-The FASTA service against proteomes will be retired on 25/02/2013. To continue accessing the complete proteome data, please visit [[http://www.uniprot.org/taxonomy/complete-proteomes|UniProt Complete and Reference Proteomes]], [[http://www.ensembl.org/|Ensembl]], [[http://www.ensemblgenomes.org/|Ensembl Genomes]] or use the [[:services:sss:wu_blast_soap|WU-BLAST]] web service to search the Ensembl Genomes sequence databases. For queries relating to this data retirement please contact us via [[http://www.ebi.ac.uk/support/|EMBL-EBI Support]].+The web services for NCBI BLAST+ ([[services:sss:ncbi_blast_rest|NCBI BLAST (REST)]] & [[services:sss:ncbi_blast_soap|NCBI BLAST (SOAP)]]) now provide more options for the output alignment views, including the BLAST archive formats.  
-==== 1st February 2013 ==== 
-The EMBL-EBI Soaplab server has been decommissioned. The [[:soaplab:overview|Soaplab]] documentation has been updated to provide details of alternative services.+==== Tuesday 20th January 2015 ====
-==== 2012 ====+The WormBase Parasite database is updated for the web services of WU-BLAST ([[services:sss:wu_blast_rest|WU-BLAST (REST)]] & [[services:sss:wu_blast_soap|WU-BLAST (SOAP)]]). 
 + 
 +==== 2014 ==== 
 + 
 +Archived news for [[.:News:2014]].
-Archived news for [[.:News:2012]]. 
 
about/news.1363625008.txt · Last modified: 2013/03/18 16:43 by wli
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