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====== News (2008) ======

[[..:News|Current]]

==== 2009 ====

News for [[.:2009]].

==== 25th November 2008 ====

Due to changes in the available data access methods with the release of Ensembl 51 (18 November 2008), Ensembl Gene (''ensemblgene'') and Ensembl Transcript (''ensembltranscript'') in WSDbfetch [[services:dbfetch|SOAP]] and [[services:dbfetch_rest|REST]] now only support returning the sequence data in fasta format.

==== 24rd October 2008 ====

Sample Java client now available for [[clients:phobius|WSPhobius]], a transmembrane domain and signal peptide prediction service.

==== 23rd October 2008 ====

C# sample clients now available for:
  * [[clients:mafft|WSMafft]]: multiple sequence alignment
  * [[clients:mpsrch|WSMPsrch]]: Smith-Waterman sequence similarity search
  * [[clients:muscle|WSMuscle]]: multiple sequence alignment
  * [[clients:phobius|WSPhobius]]: transmembrane domain and signal peptide prediction
  * [[clients:scanps|WSScanPS]]: Smith-Waterman sequence similarity search
  * [[clients:tcoffee|WSTCoffee]]: multiple sequence alignment

==== 22nd October 2008 ====

C# sample clients now available for:
  * [[clients:censor|WSCensor]]: repetative sequence element identification and masking
  * [[clients:dalilite|WSDaliLite]]: pairwise structure alignment
  * [[clients:kalign|WSKalign]]: multiple sequence alignment
  * [[clients:maxsprout|WSMaxSprout]]: protein backbone and side chain co-ordinates from a C(alpha) trace

==== 20th October 2008 ====

Entries from [[http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-noSession+-page+LibInfo+-lib+IPRMC|InterPro Matches Complete]] (''iprmc'') and [[http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-noSession+-page+LibInfo+-lib+IPRMC_UNIPARC|InterPro Matches Complete UniParc]] (''iprmcuniparc'') are now available via [[services:dbfetch|WSDbfetch]].

These InterPro Matches databases contain pre-calculated [[http://www.ebi.ac.uk/Tools/InterProScan/|InterProScan]] results for the protein sequences in the [[http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniprot|UniProtKB]] and [[http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc|UniParc]] at the time of the [[http://www.ebi.ac.uk/interpro/|InterPro]] release.

The data is available from WSDbfetch in three formats:
  - ''iprmc'': HTML entry as available in [[http://srs.ebi.ac.uk/|SRS@EBI]].
  - ''iprmcxml'': the XML entry as it appears in the data files available from the [[ftp://ftp.ebi.ac.uk/pub/databases/interpro/|FTP site]].
  - ''iprmctab'': tab-delimited text version of the entry. Columns are the same as those in the text format returned by [[http://www.ebi.ac.uk/Tools/InterProScan/|InterProScan]].

==== 20th August 2008 ====

Match/missmatch parameters (BLASTN only) are now supported by the [[http://www.ebi.ac.uk/Tools/webservices/services/ncbiblast|NCBI BLAST webservice]] ([[http://www.ebi.ac.uk/Tools/webservices/clients/ncbiblast|Java and Perl clients]] only).

==== 17th July 2008 ====

Many of the service WSDL documents ([[wsdl:list|WSDL list]]) have been updated to change to the service endpoint. If you are using pre-generated stubs in your application these will need to be regenerated to use the service. The sample Java and C# clients (see [[about:webservices|services list]]) use pre-generated stubs and have been updated for the WSDL changes. Please see the clients page for the service of interest for an updated version of the client.

==== 3rd June 2008 ====

The [[services:psiblast|WSPSIBlast]] web service is now available.

The WSDL for the PSI-Blast service ([[http://www.ebi.ac.uk/Tools/webservices/wsdl/WSPSIBlast.wsdl|WSPSIBlast.wsdl]]) and a Perl [[clients:psiblast|WSPSIBlast client]] are now available. Please see the [[services:psiblast|service]] and [[clients:psiblast|client]] pages for more details.

==== 29th May 2008 ====

The [[services:phobius|WSPhobius]] web service is now available.

The WSPhobius WSDL ([[http://www.ebi.ac.uk/Tools/webservices/wsdl/WSPhobius.wsdl|WSPhobius.wsdl]]) and a Perl [[clients:phobius|WSPhobius client]] are also available. Please see the [[services:phobius|service]] and [[clients:phobius|client]] pages for more details.

==== 23th May 2008 ====

The [[services:psisearch|WSPSISearch]] web service is now available.

The WSPSISearch WSDL ([[http://www.ebi.ac.uk/Tools/webservices/wsdl/WSPSISearch.wsdl|WSPSISearch.wsdl]]) and a Perl [[clients:psisearch|WSPSISearch client]] are also available. Please see the [[services:psisearch|service]] and [[clients:psisearch|client]] pages for more details.

==== 19th May 2008 ====

The [[services:MUSCLE|WSMuscle]] service now uses the version 3.7 of muscle.

The MUSCLE WSDL ([[http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMuscle.wsdl|WSMuscle.wsdl]]) has been updated for a change to the service endpoint. If you are using pre-generated stubs in your application these will need to be regenerated to use the service.

Note: the Java [[clients:muscle|WSMuscle client]] uses pre-generated stubs, please see the clients page for versions updated for this change.

==== 12th May 2008 ====

The [[services:dbfetch|WSDbfetch]] service now supports multiple entry retrieval for the [[http://www.ebi.ac.uk/uniprot/|UniProtKB]] XML format.

==== 28th March 2008 ====

The [[services:interproscan|WSInterProScan]] WSDL ([[http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl|WSInterProScan.wsdl]]) has been updated for a change to the service endpoint. If you are using pre-generated stubs in your application these will need to be regenerated to use the service.

Note: the Java and .NET [[clients:interproscan|WSInterProScan clients]] use pre-generated stubs, please see the clients page for versions updated for this change.
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