Thornton Group Structural Tools
Tools from the Thornton research group. Additional resources are available at the Thornton Group.
- MACiE
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Annotated enzyme reaction mechanisms.
- PDBsum
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Structural analysis, including PROCHECK, for user-submitted PDB file.
- PoreLogo
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Visualization of sequence and conservation of pore-lining residues in transmembrane protein structures.
- PoreWalker
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Detection and characterisation of transmembrane protein channels.
- ProFunc
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Protein function prediction from protein 3D structure.
- SAS
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Sequence Annotated by Structure.
- Scorecons
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Calculation of residue conservation from multiple sequence alignment.
PDBe Tools
Tools from the Protein Data Bank in Europe. Additional resources are available at the PDBe homepage.
- PDBeFold
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Secondary Structure Matching service (SSM) for the interactive comparison, alignment and superposition of protein structures in 3D.
- PDBeMotif
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Flexible 3D search and analysis of ligands, sequence, structural features and interaction motifs.
- PDBePISA
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Exploration of macromolecular (protein, DNA/RNA and ligand) interfaces and prediction of quarternary structures.
Protein Structure Analysis
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MaxSprout
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Generate protein backbone and side chain co-ordinates from a C(alpha) trace.
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DaliLite
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Pairwise structure alignment.
