Thornton Group Structural Tools

Tools from the Thornton research group. Additional resources are available at the Thornton Group.

MACiE

Annotated enzyme reaction mechanisms.

MACiE

PDBsum

Structural analysis, including PROCHECK, for user-submitted PDB file.

PDBsum

PoreLogo

Visualization of sequence and conservation of pore-lining residues in transmembrane protein structures.

PoreLogo

PoreWalker

Detection and characterisation of transmembrane protein channels.

PoreWalker

ProFunc

Protein function prediction from protein 3D structure.

ProFunc

SAS

Sequence Annotated by Structure.

SAS

Scorecons

Calculation of residue conservation from multiple sequence alignment.

Scorecons

PDBe Tools

Tools from the Protein Data Bank in Europe. Additional resources are available at the PDBe homepage.

PDBeFold

Secondary Structure Matching service (SSM) for the interactive comparison, alignment and superposition of protein structures in 3D.

PDBeFold

PDBeMotif

Flexible 3D search and analysis of ligands, sequence, structural features and interaction motifs.

PDBeMotif

PDBePISA

Exploration of macromolecular (protein, DNA/RNA and ligand) interfaces and prediction of quarternary structures.

PDBePISA

Protein Structure Analysis

MaxSprout More Information & Help Documentation

Generate protein backbone and side chain co-ordinates from a C(alpha) trace.

Launch MaxSprout

DaliLite More Information & Help Documentation

Pairwise structure alignment.

Launch DaliLite