WU-BLAST - Protein Database Query

• PROTEIN DATABASES
  • UniProt Knowledgebase
  • UniProtKB/Swiss-Prot
  • UniProtKB/Swiss-Prot isoforms
  • UniProtKB/TrEMBL
  • UniProtKB Taxonomic Subsets
    • UniProtKB Archaea
    • UniProtKB Arthropoda
    • UniProtKB Bacteria
    • UniProtKB Complete Microbial Proteomes
    • UniProtKB Eukaryota
    • UniProtKB Fungi
    • UniProtKB Human
    • UniProtKB Mammals
    • UniProtKB Nematoda
    • UniProtKB PDB
    • UniProtKB Rodents
    • UniProtKB Vertebrates
    • UniProtKB Viridiplantae
    • UniProtKB Viruses
  • UniProt Clusters
    • UniProt Clusters 100%
    • UniProt Clusters 100% (SEG filtered)
    • UniProt Clusters 90%
    • UniProt Clusters 50%
  • Patents
    • EPO Patent Protein Sequences
    • JPO Patent Protein Sequences
    • KIPO Patent Protein Sequences
    • USPTO Patent Protein Sequences
    • NR Patent Proteins Level-1
    • NR Patent Proteins Level-2
  • Structure
    • Protein Structure Sequences
    • Structural Genomics Targets
  • Other Protein Databases
    • UniProt Archive
    • International Protein Index
    • IntAct
    • IMGT/HLA
    • IPD-KIR
    • IPD-MHC
• OTHER TYPES

  General

  • Nucleotide Databases

  Specialised

  • Parasites Databases

Enter or paste a PROTEIN DNA/RNA sequence in any supported format:

Upload a file:

• PROGRAM
  blastp blastx

• MATRIX
  blosum62 blosum30 blosum35 blosum40 blosum45 blosum50 blosum65 blosum70 blosum75 blosum80 blosum85 blosum90 blosum100 GONNET pam10 pam20 pam30 pam40 pam50 pam60 pam70 pam80 pam90 pam100 pam110 pam120 pam130 pam140 pam150 pam160 pam170 pam180 pam190 pam200 pam210 pam220 pam230 pam240 pam250 pam260 pam270 pam280 pam290 pam300 pam310 pam320 pam330 pam340 pam350 pam360 pam370 pam380 pam390 pam400 pam410 pam420 pam430 pam440 pam450 pam460 pam470 pam480 pam490 pam500
• EXP THR.
  1e-200 1e-100 1e-50 1e-10 1e-5 1e-4 1e-3 1e-2 1e-1 1.0 10 (default) 100 1000
• FILTER
  none seg xnu seg+xnu
• VIEW FILTER
  no yes
• SENSITIVITY
  very low low medium normal high
• SCORES
  5 10 20 50 (default) 100 150 200 250 300 350 400 450 500
• ALIGNMENTS
  5 10 20 50 (default) 100 150 200 250 300 350 400 450 500
• SORT
  pvalue count highscore totalscore
• STATS
  sump poisson kap
• topcomboN
  1 2 3 4 5 50 100 1000 All
• ALIGNMENT VIEWS
  pairwise BLASTXML
• TRANSLATION TABLE
  N/A Standard Vertebrate Mitochondrial Yeast Mitochondrial Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma Invertebrate Mitochondrial Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear Echinoderm Mitochondrial Euplotid Nuclear Bacterial and Plant Plastid Alternative Yeast Nuclear Ascidian Mitochondrial Flatworm Mitochondrial Blepharisma Macronuclear Chlorophycean Mitochondrial Trematode Mitochondrial Scenedesmus obliquus mitochondrial Thraustochytrium mitochondrial Codon2004