NCBI BLAST - EMVEC Database Query

• VECTORS DATABASES
  • emvec
• OTHER TYPES

  General

  • Protein Databases
  • Nucleotide Databases

Enter or paste a PROTEIN DNA/RNA sequence in any supported format:

Upload a file:

• PROGRAM
  blastn tblastx tblastn

• MATRIX
  BLOSUM45 BLOSUM50 BLOSUM62 BLOSUM80 BLOSUM90 PAM30 PAM70 PAM250
• MATCH/MISMATCH SCORES
  2,-7 1,-3 2,-5 1,-2 2,-3 1,-1 5,-4 4,-5
• GAP OPEN
  default 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 25
• GAP EXTEND
  default 1 2 3 4 5 6 8 10
• EXP. THR
  1e-200 1e-100 1e-50 1e-10 1e-5 1e-4 1e-3 1e-2 1e-1 1.0 10 (default) 100 1000
• FILTER
  no yes
• DROPOFF
  0 (default) 2 4 6 8 10
• SCORES
  5 10 20 50 (default) 100 150 200 250 500 750 1000
• ALIGNMENTS
  5 10 20 50 (default) 100 150 200 250 500 750 1000
• SEQUENCE RANGE
• GAPALIGN
  true false
• ALIGNMENT VIEWS
  pairwise M/S identities M/S non-identities Flat identities Flat non-identities BLASTXML
• TRANSLATION TABLE
  N/A Standard Vertebrate Mitochondrial Yeast Mitochondrial Mold Mitochondrial Protozoan Mitochondrial Coelenterate Invertebrate Mitochondrial Ciliate Nuclear Dasycladacean Nuclear Hexamita Nuclear Echinoderm Mitochondrial Flatworm Mitochondrial Euplotid Nuclear Bacterial and Plant Plastid Alternative Yeast Nuclear Ascidian Mitochondrial Alternative Flatworm Mitochondrial Blepharisma Macronuclear Chlorophycean Mitochondrial Trematode Mitochondrial Scenedesmus obliquus Mitochondrial Thraustochytrium Mitochondrial