FASTM/FASTS/FASTF --- compare peptides to a protein sequence database

• PROTEIN DATABASES
  • UniProt Knowledgebase
  • UniProtKB/Swiss-Prot
  • UniProtKB/Swiss-Prot isoforms
  • UniProtKB/TrEMBL
  • UniProtKB Taxonomic Subsets
    • UniProtKB Archaea
    • UniProtKB Arthropoda
    • UniProtKB Bacteria
    • UniProtKB Complete Microbial Proteomes
    • UniProtKB Eukaryota
    • UniProtKB Fungi
    • UniProtKB Human
    • UniProtKB Mammals
    • UniProtKB Nematoda
    • UniProtKB PDB
    • UniProtKB Rodents
    • UniProtKB Vertebrates
    • UniProtKB Viridiplantae
    • UniProtKB Viruses
  • UniProt Clusters
    • UniProt Clusters 100%
    • UniProt Clusters 100% (SEG filtered)
    • UniProt Clusters 90%
    • UniProt Clusters 50%
  • Patents
    • EPO Patent Protein Sequences
    • JPO Patent Protein Sequences
    • KIPO Patent Protein Sequences
    • USPTO Patent Protein Sequences
    • NR Patent Proteins Level-1
    • NR Patent Proteins Level-2
  • Structure
    • Protein Structure Sequences
    • Structural Genomics Targets
  • Other Protein Databases
    • UniProt Archive
    • International Protein Index
    • IntAct
    • IMGT/HLA
    • IPD-KIR
    • IPD-MHC
• OTHER TYPES

  General

  • Nucleotide Databases

  Specialised

  • Proteomes Databases
  • LGIC Protein Databases

Enter or paste a PROTEIN sequence in any supported format:

or Upload a file:

• PROGRAM
  FASTM FASTF FASTS

• MATRIX
  BLOSUM50 BLOSUM62 BLASTP62 BLOSUM80 PAM120 PAM250 MDM10 MDM20 MDM40
• MATCH/MISMATCH SCORES
  N/A
• GAP OPEN
  -23 -22 -21 -20 -19 -18 -17 -16 -15 -14 -13 -12 -11 -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0
• GAP EXTEND
  0 -1 -2 -3 -4 -5 -6 -7 -8
• KTUP
  2 1 N/A
• EXPECTATION UPPER VALUE
  1e-600 1e-300 1e-100 1e-50 1e-10 1e-5 0.001 0.1 1 2 5 10 20 50
• EXPECTATION LOWER VALUE
  0 (default) 1e-300 1e-100 1e-50 1e-10 1e-5 0.001 0.1 1 2 5 10 20 50
• DNA STRAND
  N/A both top bottom
• HISTOGRAM
  no yes
• FILTER
  none seg xnu seg+xnu
• STATISTICAL ESTIMATES
  Regress MLE Altshul-Gish Regress/shuf. MLE/shuf.
• SCORES
  10 20 30 40 50 60 70 80 90 100 150 200 250 500 750 1000
• ALIGNMENTS
  10 20 30 40 50 60 70 80 90 100 150 200 250 500 750 1000
• SEQUENCE RANGE
• DATABASE RANGE
• MULTI HSPs
  no yes
• SCORE FORMAT
  Default -m 9 -- with coordinates scores and %identity -m 9C -- with CIGAR alignment -m 9c -- with encoded alignment -m 9i -- with identity and length