FASTA/SSEARCH - Proteome Similarity Search

This tool provides sequence similarity searching against complete proteomes databases using the FASTA suite of programs. FASTA provides a heuristic search with a protein query. FASTX and FASTY translate a DNA query. Optimal searches are available with SSEARCH (local).

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STEP 1 - Select your databases

PROTEIN DATABASES
- Eukaryota
  - Aedes aegypti
  - Ajellomyces capsulata ATCC 26029
  - Ajellomyces capsulata H143
  - Ajellomyces dermatitidis ER-3
  - Ajellomyces dermatitidis SLH14081
  - Anopheles darlingi
  - Anopheles gambiae
  - Arabidopsis thaliana
  - Arthroderma benhamiae
  - Arthroderma gypseum
  - Arthroderma otae
  - Ashbya gossypii
  - Aspergillus clavatus
  - Aspergillus flavus
  - Aspergillus niger
  - Aspergillus oryzae
  - Aspergillus terreus
  - Babesia bovis
  - Bos taurus
  - Botryotinia fuckeliana
  - Caenorhabditis briggsae
  - Caenorhabditis elegans
  - Candida albicans SC5314
  - Candida dubliniensis
  - Candida glabrata
  - Candida tropicalis
  - Chaetomium globosum NBRC 6347
  - Clavispora lusitaniae
  - Coccidioides posadasii C735
  - Colletotrichum graminicola
  - Coprinopsis cinerea
  - Cryptococcus gattii
  - Cryptococcus neoformans var. neoformans B-3501A
  - Cryptococcus neoformans var. neoformans JEC21
  - Cryptosporidium hominis TU502
  - Cryptosporidium parvum
  - Danio rerio
  - Debaryomyces hansenii
  - Deltaproteobacteria
  - Dictyostelium discoideum
  - Drosophila melanogaster
  - Drosophila pseudoobscura pseudoobscura
  - Encephalitozoon cuniculi
  - Encephalitozoon intestinalis
  - Enterocytozoon bieneusi
  - Gallus gallus
  - Giardia intestinalis
  - Giardia intestinalis ATCC 50581
  - Giardia intestinalis ATCC 50803
  - Guillardia theta
  - Hemiselmis andersenii
  - Homo sapiens
  - Kluyveromyces lactis
  - Laccaria bicolor
  - Lachancea thermotolerans
  - Leishmania braziliensis
  - Leishmania donovani
  - Leishmania infantum
  - Leishmania major
  - Leishmania mexicana
  - Loa loa
  - Lodderomyces elongisporus
  - Magnaporthe oryzae
  - Malassezia globosa
  - Meyerozyma guilliermondii
  - Moniliophthora perniciosa
  - Monosiga brevicollis
  - Mus musculus
  - Nectria haematococca
  - Nematostella vectensis
  - Neosartorya fischeri
  - Neosartorya fumigata ATCC MYA-4609
  - Neosartorya fumigata CEA10
  - Neospora caninum
  - Neurospora crassa
  - Nosema ceranae
  - Oryza sativa
  - Ostreococcus lucimarinus
  - Ostreococcus tauri
  - Paludibacter propionicigenes
  - Paracoccidioides brasiliensis ATCC MYA-826
  - Paracoccidioides brasiliensis Pb03
  - Paracoccidioides brasiliensis Pb18
  - Paramecium tetraurelia
  - Penicillium chrysogenum
  - Penicillium marneffei
  - Phaeosphaeria nodorum
  - Pichia angusta
  - Pichia pastoris
  - Pichia pastoris GS115
  - Plasmodium berghei
  - Plasmodium chabaudi
  - Plasmodium falciparum
  - Plasmodium knowlesi
  - Plasmodium vivax
  - Plasmodium yoelii yoelii
  - Polysphondylium pallidum
  - Postia placenta
  - Puccinia graminis f. sp. tritici
  - Pyrenophora teres f. teres
  - Rattus norvegicus
  - Saccharomyces cerevisiae ATCC 204508
  - Saccharomyces cerevisiae AWRI1631
  - Saccharomyces cerevisiae AWRI796
  - Saccharomyces cerevisiae FostersB
  - Saccharomyces cerevisiae FostersO
  - Saccharomyces cerevisiae JAY291
  - Saccharomyces cerevisiae Lalvin EC1118
  - Saccharomyces cerevisiae Lalvin QA23
  - Saccharomyces cerevisiae RM11-1a
  - Saccharomyces cerevisiae VIN 13
  - Saccharomyces cerevisiae YJM789
  - Saccharomyces cerevisiae Zymaflore VL3
  - Scheffersomyces stipitis
  - Schizosaccharomyces japonicus
  - Schizosaccharomyces pombe
  - Sclerotinia sclerotiorum
  - Sordaria macrospora
  - Sporisorium reilianum
  - Talaromyces stipitatus
  - Tetraodon nigroviridis
  - Thalassiosira pseudonana
  - Theileria annulata
  - Theileria parva
  - Toxoplasma gondii RH
  - Trichinella spiralis
  - Trichophyton verrucosum
  - Trypanosoma brucei brucei
  - Trypanosoma brucei gambiense
  - Trypanosoma cruzi
  - Uncinocarpus reesii
  - Ustilago maydis
  - Vanderwaltozyma polyspora
  - Verticillium albo-atrum
  - Yarrowia lipolytica
  - Zygosaccharomyces rouxii
- Archaea
  - Acidilobus saccharovorans
  - Aciduliprofundum boonei
  - Aeropyrum pernix
  - Archaeoglobus fulgidus
  - Archaeoglobus profundus
  - Archaeoglobus veneficus SNP6
  - Caldivirga maquilingensis
  - Candidatus Caldiarchaeum subterraneum
  - Desulfurococcus kamchatkensis
  - Desulfurococcus mucosus
  - Ferroglobus placidus
  - Haladaptatus paucihalophilus DX253
  - Halalkalicoccus jeotgali
  - Haloarcula marismortui
  - Halobacterium salinarium
  - Halobacterium salinarum
  - Haloferax volcanii
  - Halogeometricum borinquense
  - Halomicrobium mukohataei
  - Haloquadratum walsbyi
  - Halorhabdus utahensis
  - Halorubrum lacusprofundi
  - Haloterrigena turkmenica
  - Hyperthermus butylicus
  - Ignicoccus hospitalis
  - Ignisphaera aggregans
  - Korarchaeum cryptofilum
  - Metallosphaera sedula
  - Methanobacterium sp.
  - Methanobacterium thermoautotrophicum
  - Methanobrevibacter ruminantium
  - Methanobrevibacter smithii
  - Methanobrevibacter smithii DSM 2374
  - Methanobrevibacter smithii DSM 2375
  - Methanocaldococcus fervens
  - Methanocaldococcus infernus
  - Methanocaldococcus jannaschii
  - Methanocaldococcus sp.
  - Methanocaldococcus vulcanius
  - Methanocella paludicola
  - Methanococcoides burtonii
  - Methanococcus aeolicus
  - Methanococcus maripaludis C5
  - Methanococcus maripaludis C6
  - Methanococcus maripaludis C7
  - Methanococcus maripaludis S2
  - Methanococcus vannielii
  - Methanococcus voltae
  - Methanocorpusculum labreanum
  - Methanoculleus marisnigri
  - Methanohalobium evestigatum
  - Methanohalophilus mahii
  - Methanoplanus petrolearius
  - Methanopyrus kandleri
  - Methanoregula boonei
  - Methanosaeta thermophila
  - Methanosarcina acetivorans
  - Methanosarcina barkeri
  - Methanosarcina mazei
  - Methanosphaera stadtmanae
  - Methanosphaerula palustris
  - Methanospirillum hungatei
  - Methanothermobacter marburgensis
  - Methanothermococcus okinawensis IH1
  - Methanothermus fervidus
  - Nanoarchaeum equitans
  - Natrialba magadii
  - Natronomonas pharaonis
  - Nitrosopumilus maritimus
  - Picrophilus torridus
  - Pyrobaculum aerophilum
  - Pyrobaculum arsenaticum
  - Pyrobaculum calidifontis
  - Pyrobaculum islandicum
  - Pyrococcus abyssi
  - Pyrococcus furiosus
  - Pyrococcus horikoshii
  - Pyrococcus kodakaraensis
  - Staphylothermus hellenicus
  - Staphylothermus marinus
  - Sulfolobus acidocaldarius
  - Sulfolobus islandicus HVE10/4
  - Sulfolobus islandicus L.D.8.5
  - Sulfolobus islandicus L.S.2.15
  - Sulfolobus islandicus M.14.25
  - Sulfolobus islandicus M.16.27
  - Sulfolobus islandicus M.16.4
  - Sulfolobus islandicus REY15A
  - Sulfolobus islandicus Y.G.57.14
  - Sulfolobus islandicus Y.N.15.51
  - Sulfolobus solfataricus 98/2
  - Sulfolobus solfataricus ATCC 35092
  - Sulfolobus tokodaii
  - Thermococcus barophilus
  - Thermococcus gammatolerans
  - Thermococcus onnurineus
  - Thermococcus sibiricus
  - Thermofilum pendens
  - Thermoplasma acidophilum
  - Thermoplasma volcanium
  - Thermoproteus neutrophilus
  - Thermoproteus uzoniensis 768-20
  - Thermosphaera aggregans
  - Uncultured methanogenic archaeon RC-I
  - Vulcanisaeta distributa
  - Vulcanisaeta moutnovskia
- Bacteria
  - Abiotrophia defectiva ATCC 49176
  - Acaryochloris marina
  - Accumulibacter phosphatis
  - Acetivibrio cellulolyticus CD2
  - Acetobacter pasteurianus
  - Acetobacter pasteurianus IFO 3283-01-42C
  - Acetobacter pasteurianus IFO 3283-03
  - Acetobacter pasteurianus IFO 3283-07
  - Acetobacter pasteurianus IFO 3283-12
  - Acetobacter pasteurianus IFO 3283-22
  - Acetobacter pasteurianus IFO 3283-26
  - Acetobacter pasteurianus IFO 3283-32
  - Acetobacter pomorum DM001
  - Acetohalobium arabaticum
  - Acholeplasma laidlawii
  - Achromobacter piechaudii ATCC 43553
  - Achromobacter xylosoxidans
  - Achromobacter xylosoxidans C54
  - Acidaminococcus fermentans
  - Acidaminococcus sp. D21
  - Acidimicrobium ferrooxidans DSM 10331
  - Acidiphilium cryptum
  - Acidiphilium multivorum
  - Acidithiobacillus caldus ATCC 51756
  - Acidithiobacillus ferrooxidans ATCC 23270
  - Acidithiobacillus ferrooxidans ATCC 53993
  - Acidobacteria bacterium
  - Acidobacterium capsulatum
  - Acidobacterium sp.
  - Acidobacterium sp. MP5ACTX8
  - Acidothermus cellulolyticus
  - Acidovorax avenae
  - Acidovorax citrulli
  - Acidovorax delafieldii 2AN
  - Acidovorax ebreus
  - Acidovorax sp.
  - Acinetobacter baumannii 1656-2
  - Acinetobacter baumannii AB0057
  - Acinetobacter baumannii AB307-0294
  - Acinetobacter baumannii ACICU
  - Acinetobacter baumannii ATCC 17978
  - Acinetobacter baumannii AYE
  - Acinetobacter baumannii SDF
  - Acinetobacter baumannii TCDC-AB0715
  - Acinetobacter calcoaceticus
  - Acinetobacter haemolyticus ATCC 19194
  - Acinetobacter radioresistens SK82
  - Acinetobacter sp. ADP1
  - Acinetobacter sp. ATCC 27244
  - Acinetobacter sp. JCM 1667
  - Actinobacillus minor 202
  - Actinobacillus minor NM305
  - Actinobacillus pleuropneumoniae 1096
  - Actinobacillus pleuropneumoniae 3
  - Actinobacillus pleuropneumoniae 4074
  - Actinobacillus pleuropneumoniae 46
  - Actinobacillus pleuropneumoniae 56153
  - Actinobacillus pleuropneumoniae 5b
  - Actinobacillus pleuropneumoniae 7
  - Actinobacillus pleuropneumoniae CVJ13261
  - Actinobacillus pleuropneumoniae D13039
  - Actinobacillus pleuropneumoniae Femo
  - Actinobacillus pleuropneumoniae M62
  - Actinobacillus pleuropneumoniae N273
  - Actinobacillus pleuropneumoniae S1536
  - Actinobacillus succinogenes
  - Actinobacillus ureae ATCC 25976
  - Actinomyces coleocanis DSM 15436
  - Actinomyces odontolyticus ATCC 17982
  - Actinomyces odontolyticus F0309
  - Actinomyces sp. oral taxon 171 F0337
  - Actinomyces sp. oral taxon 178 F0338
  - Actinomyces sp. oral taxon 180 F0310
  - Actinomyces sp. oral taxon 848 F0332
  - Actinomyces urogenitalis DSM 15434
  - Actinosynnema mirum
  - Aerococcus urinae ACS-120-V-Col10a
  - Aerococcus viridans
  - Aeromicrobium marinum DSM 15272
  - Aeromonas hydrophila
  - Aeromonas salmonicida A449
  - Afipia sp. 1NLS2
  - Aggregatibacter actinomycetemcomitans
  - Aggregatibacter actinomycetemcomitans D7S-1
  - Aggregatibacter aphrophilus
  - Aggregatibacter segnis ATCC 33393
  - Agrobacterium radiobacter
  - Agrobacterium sp. H13-3
  - Agrobacterium tumefaciens
  - Agrobacterium vitis
  - Ahrensia sp. R2A130
  - Akkermansia muciniphila
  - Alcanivorax borkumensis
  - Algoriphagus sp. PR1
  - Alicycliphilus denitrificans
  - Alicyclobacillus acidocaldarius
  - Alicyclobacillus acidocaldarius LAA1
  - Aliivibrio salmonicida LFI1238
  - Alistipes putredinis DSM 17216
  - Alistipes shahii WAL 8301
  - Alistipes sp. HGB5
  - Alkalilimnicola ehrlichei
  - Alkaliphilus metalliredigens
  - Alkaliphilus oremlandii
  - Allochromatium vinosum
  - Alpha proteobacterium BAL199
  - Alteromonadales bacterium TW-7
  - Alteromonas macleodii
  - Aminobacterium colombiense
  - Ammonifex degensii
  - Amoebophilus asiaticus
  - Amycolatopsis mediterranei
  - Anabaena variabilis
  - Anaerobaculum hydrogeniformans ATCC BAA-1850
  - Anaerocellum thermophilum
  - Anaerococcus hydrogenalis ACS-025-V-Sch4
  - Anaerococcus hydrogenalis DSM 7454
  - Anaerococcus lactolyticus ATCC 51172
  - Anaerococcus prevotii
  - Anaerococcus prevotii ACS-065-V-Col13
  - Anaerococcus tetradius ATCC 35098
  - Anaerococcus vaginalis ATCC 51170
  - Anaerofustis stercorihominis DSM 17244
  - Anaerolinea thermophila
  - Anaeromyxobacter dehalogenans 2CP-1
  - Anaeromyxobacter dehalogenans 2CP-C
  - Anaeromyxobacter sp. Fw109-5
  - Anaeromyxobacter sp. K
  - Anaerostipes caccae DSM 14662
  - Anaerostipes sp. 3_2_56FAA
  - Anaerotruncus colihominis DSM 17241
  - Anaplasma centrale
  - Anaplasma marginale Florida
  - Anaplasma marginale St. Maries
  - Anaplasma phagocytophilum
  - Anoxybacillus flavithermus
  - Aquifex aeolicus
  - Arcanobacterium haemolyticum
  - Arcobacter butzleri
  - Arcobacter butzleri JV22
  - Arcobacter nitrofigilis
  - Aromatoleum aromaticum
  - Arthrobacter arilaitensis
  - Arthrobacter aurescens
  - Arthrobacter chlorophenolicus
  - Arthrobacter phenanthrenivorans
  - Arthrobacter sp.
  - Arthrospira maxima CS-328
  - Aster yellows witches'-broom phytoplasma
  - Atopobium parvulum
  - Atopobium rimae ATCC 49626
  - Atopobium vaginae DSM 15829
  - Atopobium vaginae PB189-T1-4
  - Azoarcus sp.
  - Azobacteroides pseudotrichonymphae genomovar. CFP2
  - Azorhizobium caulinodans
  - Azospirillum sp.
  - Azotobacter vinelandii
  - Bacillus amyloliquefaciens ATCC 23350
  - Bacillus amyloliquefaciens FZB42
  - Bacillus anthracis A0174
  - Bacillus anthracis A0193
  - Bacillus anthracis A0248
  - Bacillus anthracis A0389
  - Bacillus anthracis A0442
  - Bacillus anthracis A0465
  - Bacillus anthracis A0488
  - Bacillus anthracis Ames
  - Bacillus anthracis Ames ancestor
  - Bacillus anthracis CDC 684
  - Bacillus anthracis Sterne
  - Bacillus anthracis Tsiankovskii-I
  - Bacillus atrophaeus
  - Bacillus cellulosilyticus
  - Bacillus cereus 03BB102
  - Bacillus cereus 03BB108
  - Bacillus cereus 172560W
  - Bacillus cereus 95/8201
  - Bacillus cereus AH1134
  - Bacillus cereus AH1271
  - Bacillus cereus AH1272
  - Bacillus cereus AH1273
  - Bacillus cereus AH187
  - Bacillus cereus AH603
  - Bacillus cereus AH621
  - Bacillus cereus AH676
  - Bacillus cereus AH820
  - Bacillus cereus ATCC 10876
  - Bacillus cereus ATCC 10987
  - Bacillus cereus ATCC 14579
  - Bacillus cereus ATCC 4342
  - Bacillus cereus B4264
  - Bacillus cereus BDRD-Bcer4
  - Bacillus cereus BDRD-ST196
  - Bacillus cereus BDRD-ST24
  - Bacillus cereus BDRD-ST26
  - Bacillus cereus BGSC 6E1
  - Bacillus cereus F65185
  - Bacillus cereus G9241
  - Bacillus cereus G9842
  - Bacillus cereus H3081.97
  - Bacillus cereus MM3
  - Bacillus cereus NVH0597-99
  - Bacillus cereus Q1
  - Bacillus cereus R309803
  - Bacillus cereus Rock1-15
  - Bacillus cereus Rock1-3
  - Bacillus cereus Rock3-28
  - Bacillus cereus Rock3-29
  - Bacillus cereus Rock3-42
  - Bacillus cereus Rock3-44
  - Bacillus cereus Rock4-18
  - Bacillus cereus Rock4-2
  - Bacillus cereus W
  - Bacillus cereus ZK
  - Bacillus cereus cytotoxis
  - Bacillus cereus m1293
  - Bacillus cereus mm1550
  - Bacillus cereus var. anthracis
  - Bacillus clausii
  - Bacillus coagulans 36D1
  - Bacillus halodurans
  - Bacillus licheniformis Goettingen
  - Bacillus licheniformis Novozymes
  - Bacillus megaterium ATCC 12872
  - Bacillus megaterium DSM 319
  - Bacillus mycoides DSM 2048
  - Bacillus mycoides Rock1-4
  - Bacillus mycoides Rock3-17
  - Bacillus pseudofirmus
  - Bacillus pseudomycoides DSM 12442
  - Bacillus pumilus
  - Bacillus pumilus ATCC 7061
  - Bacillus selenitireducens
  - Bacillus sp. 2_A_57_CT2
  - Bacillus sp. B14905
  - Bacillus sp. BT1B_CT2
  - Bacillus sp. NRRL B-14911
  - Bacillus sp. SG-1
  - Bacillus subtilis 168
  - Bacillus subtilis ATCC 6633 spizizenii
  - Bacillus subtilis BSn5
  - Bacillus subtilis spizizenii
  - Bacillus thuringiensis ATCC 10792
  - Bacillus thuringiensis ATCC 35646 israelensis
  - Bacillus thuringiensis Al Hakam
  - Bacillus thuringiensis BGSC 4AJ1
  - Bacillus thuringiensis BGSC 4AW1 andalousiensis
  - Bacillus thuringiensis BGSC 4BA1 pondicheriensis
  - Bacillus thuringiensis BGSC 4BD1 huazhongensis
  - Bacillus thuringiensis BGSC 4CC1 pulsiensis
  - Bacillus thuringiensis BGSC 4Y1 tochigiensis
  - Bacillus thuringiensis BMB171
  - Bacillus thuringiensis Bt407
  - Bacillus thuringiensis CT-43
  - Bacillus thuringiensis IBL200
  - Bacillus thuringiensis IBL4222
  - Bacillus thuringiensis T01001
  - Bacillus thuringiensis T03a001 kurstaki
  - Bacillus thuringiensis T04001 sotto
  - Bacillus thuringiensis YBT-020
  - Bacillus thuringiensis konkukian
  - Bacillus thuringiensis t13001 pakistani
  - Bacillus tusciae
  - Bacillus weihenstephanensis
  - Bacteriovorax marinus
  - Bacteroides caccae ATCC 43185
  - Bacteroides capillosus ATCC 29799
  - Bacteroides cellulosilyticus DSM 14838
  - Bacteroides coprocola DSM 17136
  - Bacteroides dorei DSM 17855
  - Bacteroides eggerthii 1_2_48FAA
  - Bacteroides eggerthii DSM 20697
  - Bacteroides finegoldii DSM 17565
  - Bacteroides fragilis 638R
  - Bacteroides fragilis ATCC 25285
  - Bacteroides fragilis YCH46
  - Bacteroides helcogenes
  - Bacteroides intestinalis DSM 17393
  - Bacteroides ovatus ATCC 8483
  - Bacteroides ovatus SD CC 2a
  - Bacteroides ovatus SD CMC 3f
  - Bacteroides pectinophilus ATCC 43243
  - Bacteroides plebeius DSM 17135
  - Bacteroides salanitronis
  - Bacteroides sp. 3_1_40A
  - Bacteroides sp. 4_1_36
  - Bacteroides stercoris ATCC 43183
  - Bacteroides thetaiotaomicron
  - Bacteroides uniformis ATCC 8492
  - Bacteroides vulgatus
  - Bacteroides vulgatus PC510
  - Bacteroides xylanisolvens SD CC 1b
  - Bacteroides xylanisolvens XB1A
  - Bartonella bacilliformis
  - Bartonella clarridgeiae
  - Bartonella grahamii
  - Bartonella henselae
  - Bartonella quintana
  - Bartonella tribocorum
  - Baumannia cicadellinicola coagulata
  - Bdellovibrio bacteriovorus
  - Beggiatoa sp. PS
  - Beggiatoa sp. SS
  - Beijerinckia indica
  - Bermanella marisrubri
  - Beutenbergia cavernae
  - Bifidobacterium adolescentis
  - Bifidobacterium adolescentis L2-32
  - Bifidobacterium angulatum DSM 20098
  - Bifidobacterium animalis AD011
  - Bifidobacterium animalis BB-12
  - Bifidobacterium animalis Bl-04
  - Bifidobacterium animalis DSM 10140
  - Bifidobacterium animalis HN019
  - Bifidobacterium animalis V9
  - Bifidobacterium bifidum PRL2010
  - Bifidobacterium bifidum S17
  - Bifidobacterium breve DSM 20213
  - Bifidobacterium catenulatum DSM 16992
  - Bifidobacterium dentium
  - Bifidobacterium dentium ATCC 27678
  - Bifidobacterium dentium ATCC 27679
  - Bifidobacterium dentium JCVIHMP022
  - Bifidobacterium gallicum DSM 20093
  - Bifidobacterium longum 157F
  - Bifidobacterium longum ATCC 15707
  - Bifidobacterium longum ATCC 55813 infantis
  - Bifidobacterium longum BBMN68
  - Bifidobacterium longum DJO10A
  - Bifidobacterium longum F8
  - Bifidobacterium longum JDM301
  - Bifidobacterium longum JGI
  - Bifidobacterium longum NCC 2705
  - Bifidobacterium longum Tokyo
  - Bifidobacterium pseudocatenulatum DSM 20438
  - Bifidobacterium sp. 12_1_47BFAA
  - Bilophila wadsworthia 3_1_6
  - Blastopirellula marina DSM 3645
  - Blattabacterium sp. Blattella germanica
  - Blattabacterium sp. Periplaneta americana
  - Blautia hansenii DSM 20583
  - Blautia hydrogenotrophica DSM 10507
  - Blochmannia floridanus
  - Blochmannia pennsylvanicus
  - Blochmannia vafer
  - Bordetella avium
  - Bordetella bronchiseptica
  - Bordetella parapertussis
  - Bordetella pertussis
  - Bordetella petrii
  - Borrelia afzelii
  - Borrelia afzelii ACA-1
  - Borrelia burgdorferi 118a
  - Borrelia burgdorferi 156a
  - Borrelia burgdorferi 29805
  - Borrelia burgdorferi 64b
  - Borrelia burgdorferi 72a
  - Borrelia burgdorferi 94a
  - Borrelia burgdorferi Bol26
  - Borrelia burgdorferi CA-11.2a
  - Borrelia burgdorferi DSM 4680
  - Borrelia burgdorferi JD1
  - Borrelia burgdorferi N40
  - Borrelia burgdorferi WI91-23
  - Borrelia burgdorferi ZS7
  - Borrelia duttonii
  - Borrelia garinii
  - Borrelia garinii Far04
  - Borrelia garinii PBr
  - Borrelia hermsii
  - Borrelia recurrentis
  - Borrelia sp. SV1
  - Borrelia spielmanii A14S
  - Borrelia turicatae
  - Borrelia valaisiana VS116
  - Brachybacterium faecium
  - Brachyspira hyodysenteriae
  - Brachyspira murdochii
  - Brachyspira pilosicoli
  - Bradyrhizobium japonicum
  - Bradyrhizobium sp. BTAi1
  - Bradyrhizobium sp. ORS278
  - Brevibacillus brevis
  - Brevibacterium mcbrellneri ATCC 49030
  - Brevundimonas subvibrioides
  - Brucella abortus 1
  - Brucella abortus 2308
  - Brucella abortus A
  - Brucella abortus S19
  - Brucella canis
  - Brucella ceti Cudo
  - Brucella melitensis 1
  - Brucella melitensis 2
  - Brucella melitensis M28
  - Brucella melitensis bv. 2 63/9
  - Brucella microti
  - Brucella ovis
  - Brucella sp. BO1
  - Brucella sp. BO2
  - Brucella sp. NF 2653
  - Brucella suis
  - Brucella suis 1
  - Bryantella formatexigens DSM 14469
  - Buchnera aphidicola 5A
  - Buchnera aphidicola Baizongia pistaciae
  - Buchnera aphidicola JF98
  - Buchnera aphidicola JF99
  - Buchnera aphidicola LL01
  - Buchnera aphidicola TLW03
  - Buchnera aphidicola Tokyo 1998
  - Buchnera aphidicola Tuc7
  - Buchnera aphidicola cedri Cinara
  - Buchnera aphidicola graminum Schizaphis
  - Burkholderia ambifaria AMMD
  - Burkholderia ambifaria IOP40-10
  - Burkholderia ambifaria MC40-6
  - Burkholderia ambifaria MEX-5
  - Burkholderia cenocepacia AU 1054
  - Burkholderia cenocepacia HI2424
  - Burkholderia cenocepacia MC0-3
  - Burkholderia cepacia
  - Burkholderia glumae
  - Burkholderia graminis C4D1M
  - Burkholderia mallei ATCC 23344
  - Burkholderia mallei GB8 horse 4
  - Burkholderia mallei NCTC 10229
  - Burkholderia mallei NCTC 10247
  - Burkholderia mallei PRL-20
  - Burkholderia mallei SAVP1
  - Burkholderia multivorans CGD1
  - Burkholderia multivorans CGD2
  - Burkholderia multivorans CGD2M
  - Burkholderia multivorans DOE JGI
  - Burkholderia multivorans Tohoku University
  - Burkholderia phymatum
  - Burkholderia phytofirmans
  - Burkholderia pseudomallei 1106a
  - Burkholderia pseudomallei 1710b
  - Burkholderia pseudomallei 305
  - Burkholderia pseudomallei 576
  - Burkholderia pseudomallei 668
  - Burkholderia pseudomallei K96243
  - Burkholderia pseudomallei MSHR346
  - Burkholderia pseudomallei Pakistan 9
  - Burkholderia rhizoxinica
  - Burkholderia sp. ATCC 17760
  - Burkholderia sp. CCGE1002
  - Burkholderia sp. CCGE1003
  - Burkholderia sp. Ch1-1
  - Burkholderia sp. H160
  - Burkholderia sp. TJI49
  - Burkholderia thailandensis
  - Burkholderia vietnamiensis
  - Burkholderia xenovorans
  - Butyrivibrio crossotus DSM 2876
  - Butyrivibrio fibrisolvens 16/4
  - Butyrivibrio proteoclasticus
  - Caldicellulosiruptor hydrothermalis
  - Caldicellulosiruptor kristjanssonii
  - Caldicellulosiruptor kronotskyensis
  - Caldicellulosiruptor lactoaceticus 6A
  - Caldicellulosiruptor obsidiansis
  - Caldicellulosiruptor owensensis
  - Caldicellulosiruptor saccharolyticus
  - Calditerrivibrio nitroreducens
  - Caminibacter mediatlanticus TB-2
  - Campylobacter coli JV20
  - Campylobacter coli RM2228
  - Campylobacter concisus
  - Campylobacter curvus
  - Campylobacter fetus
  - Campylobacter gracilis RM3268
  - Campylobacter hominis ATCC BAA-381
  - Campylobacter jejuni 1336
  - Campylobacter jejuni 260.94
  - Campylobacter jejuni 305
  - Campylobacter jejuni 327
  - Campylobacter jejuni 414
  - Campylobacter jejuni 84-25
  - Campylobacter jejuni CF93-6
  - Campylobacter jejuni CG8421
  - Campylobacter jejuni CG8486
  - Campylobacter jejuni DFVF1099
  - Campylobacter jejuni HB93-13
  - Campylobacter jejuni HS21
  - Campylobacter jejuni HS:41
  - Campylobacter jejuni IA3902
  - Campylobacter jejuni O:2
  - Campylobacter jejuni O:23/36
  - Campylobacter jejuni O:6
  - Campylobacter jejuni RM1221
  - Campylobacter jejuni S3
  - Campylobacter jejuni doylei
  - Campylobacter lari
  - Campylobacter rectus RM3267
  - Campylobacter showae RM3277
  - Campylobacter upsaliensis JV21
  - Campylobacter upsaliensis RM3195
  - Candidatus Nitrospira defluvii
  - Candidatus Pelagibacter sp. IMCC9063
  - Candidatus Pelagibacter ubique HTCC1002
  - Capnocytophaga gingivalis JCVIHMP016
  - Capnocytophaga ochracea
  - Capnocytophaga ochracea F0287
  - Capnocytophaga sp. oral taxon 338 F0234
  - Capnocytophaga sputigena Capno
  - Carboxydothermus hydrogenoformans
  - Cardiobacterium hominis ATCC 15826
  - Carnobacterium sp. AT7
  - Carsonella ruddii
  - Catenibacterium mitsuokai DSM 15897
  - Catenulispora acidiphila
  - Catonella morbi ATCC 51271
  - Caulobacter crescentus CB15
  - Caulobacter crescentus NA1000
  - Caulobacter segnis
  - Caulobacter sp.
  - Cellulomonas flavigena
  - Cellulophaga algicola
  - Cellulophaga lytica
  - Cellvibrio japonicus
  - Chitinophaga pinensis
  - Chlamydia muridarum
  - Chlamydia pneumoniae AR39
  - Chlamydia pneumoniae CWL029
  - Chlamydia pneumoniae J138
  - Chlamydia pneumoniae TW-183
  - Chlamydia trachomatis A
  - Chlamydia trachomatis D-EC
  - Chlamydia trachomatis D-LC
  - Chlamydia trachomatis D/UW-3/Cx
  - Chlamydia trachomatis E/11023
  - Chlamydia trachomatis E/150
  - Chlamydia trachomatis G/11074
  - Chlamydia trachomatis G/11222
  - Chlamydia trachomatis G/9301
  - Chlamydia trachomatis G/9768
  - Chlamydia trachomatis Jali20/OT
  - Chlamydia trachomatis L2
  - Chlamydia trachomatis L2b
  - Chlamydia trachomatis Sweden2
  - Chlamydia trachomatis TZ1A828/OT
  - Chlamydophila abortus
  - Chlamydophila caviae
  - Chlamydophila felis
  - Chlamydophila pneumoniae LPCoLN
  - Chlamydophila psittaci 6BC
  - Chlamydophila psittaci RD1
  - Chlorobaculum parvum thiosulfatophilum
  - Chlorobium chlorochromatii
  - Chlorobium ferrooxidans DSM 13031
  - Chlorobium limicola
  - Chlorobium phaeobacteroides BS1
  - Chlorobium phaeobacteroides DSM 266
  - Chlorobium tepidum
  - Chloroflexus aggregans
  - Chloroflexus aurantiacus ATCC 29364
  - Chloroflexus aurantiacus ATCC 29366
  - Chloroherpeton thalassium
  - Chromobacterium violaceum
  - Chromohalobacter salexigens
  - Chryseobacterium gleum ATCC 35910
  - Chthoniobacter flavus Ellin428
  - Citrobacter koseri
  - Citrobacter rodentium
  - Citrobacter youngae ATCC 29220
  - Clavibacter michiganensis
  - Clavibacter michiganensis sepedonicus
  - Cloacamonas acidaminovorans
  - Clostridiales genomosp. BVAB3
  - Clostridium acetobutylicum
  - Clostridium acetobutylicum EA 2018
  - Clostridium asparagiforme DSM 15981
  - Clostridium bartlettii DSM 16795
  - Clostridium beijerinckii
  - Clostridium bolteae ATCC BAA-613
  - Clostridium botulinum 230613
  - Clostridium botulinum 657
  - Clostridium botulinum ATCC 19397
  - Clostridium botulinum Alaska E43
  - Clostridium botulinum Bf
  - Clostridium botulinum C Eklund
  - Clostridium botulinum D 1873
  - Clostridium botulinum E1 'BoNT E Beluga'
  - Clostridium botulinum Eklund 17B
  - Clostridium botulinum H04402 065
  - Clostridium botulinum Kyoto
  - Clostridium botulinum Langeland
  - Clostridium botulinum Loch Maree
  - Clostridium botulinum Los Alamos
  - Clostridium botulinum NCTC 2916
  - Clostridium botulinum Okra
  - Clostridium botulinum Sanger
  - Clostridium butyricum 5521
  - Clostridium butyricum E4 E BL5262
  - Clostridium carboxidivorans P7
  - Clostridium cellulolyticum
  - Clostridium cellulovorans
  - Clostridium cf. saccharolyticum K10
  - Clostridium difficile 630
  - Clostridium difficile CD196
  - Clostridium difficile NAP07
  - Clostridium difficile NAP08
  - Clostridium difficile R20291
  - Clostridium hathewayi DSM 13479
  - Clostridium hiranonis DSM 13275
  - Clostridium hylemonae DSM 15053
  - Clostridium kluyveri ATCC 8527
  - Clostridium kluyveri NBRC 12016
  - Clostridium lentocellum DSM 5427
  - Clostridium leptum DSM 753
  - Clostridium ljungdahlii
  - Clostridium methylpentosum DSM 5476
  - Clostridium nexile DSM 1787
  - Clostridium novyi
  - Clostridium papyrosolvens DSM 2782
  - Clostridium perfringens 13
  - Clostridium perfringens ATCC 13124
  - Clostridium perfringens B 3626 ATCC
  - Clostridium perfringens C JGS1495
  - Clostridium perfringens CPE F4969
  - Clostridium perfringens D JGS1721
  - Clostridium perfringens E JGS1987
  - Clostridium perfringens NCTC 8239
  - Clostridium perfringens SM101
  - Clostridium phytofermentans
  - Clostridium ramosum DSM 1402
  - Clostridium saccharolyticum
  - Clostridium scindens ATCC 35704
  - Clostridium sp. HGF2
  - Clostridium sp. L2-50
  - Clostridium sp. M62/1
  - Clostridium sp. SS2/1
  - Clostridium spiroforme DSM 1552
  - Clostridium sticklandii
  - Clostridium symbiosum WAL-14163
  - Clostridium symbiosum WAL-14673
  - Clostridium tetani
  - Clostridium thermocellum ATCC 27405
  - Clostridium thermocellum DSM 1313
  - Clostridium thermocellum DSM 2360
  - Clostridium thermocellum DSM 4150
  - Collinsella aerofaciens ATCC 25986
  - Collinsella intestinalis DSM 13280
  - Collinsella stercoris DSM 13279
  - Colwellia psychrerythraea
  - Comamonas testosteroni
  - Comamonas testosteroni KF-1
  - Comamonas testosteroni S44
  - Conexibacter woesei
  - Congregibacter litoralis KT71
  - Coprobacillus sp. 29_1
  - Coprococcus catus GD/7
  - Coprococcus comes ATCC 27758
  - Coprococcus eutactus ATCC 27759
  - Coprococcus sp. ART55/1
  - Coprothermobacter proteolyticus
  - Coraliomargarita akajimensis
  - Coriobacterium glomerans PW2
  - Corynebacterium accolens ATCC 49725
  - Corynebacterium accolens ATCC 49726
  - Corynebacterium ammoniagenes DSM 20306
  - Corynebacterium amycolatum SK46
  - Corynebacterium aurimucosum
  - Corynebacterium diphtheriae
  - Corynebacterium efficiens
  - Corynebacterium efficiens YS-314
  - Corynebacterium genitalium ATCC 33030
  - Corynebacterium glucuronalyticum ATCC 51866
  - Corynebacterium glucuronalyticum ATCC 51867
  - Corynebacterium glutamicum Kalinowski
  - Corynebacterium glutamicum Nakagawa
  - Corynebacterium glutamicum R
  - Corynebacterium jeikeium
  - Corynebacterium jeikeium ATCC 43734
  - Corynebacterium kroppenstedtii
  - Corynebacterium lipophiloflavum DSM 44291
  - Corynebacterium matruchotii ATCC 14266
  - Corynebacterium matruchotii ATCC 33806
  - Corynebacterium pseudogenitalium ATCC 33035
  - Corynebacterium pseudotuberculosis 1002
  - Corynebacterium pseudotuberculosis C231
  - Corynebacterium pseudotuberculosis FRC41
  - Corynebacterium pseudotuberculosis I19
  - Corynebacterium striatum ATCC 6940
  - Corynebacterium tuberculostearicum SK141
  - Corynebacterium urealyticum
  - Coxiella burnetii Dugway 5J108-111
  - Coxiella burnetii Nine Mile phase I
  - Coxiella burnetii Q154
  - Coxiella burnetii Q212
  - Coxiella burnetii RSA 331
  - Coxiella burnetii RSA 334
  - Croceibacter atlanticus
  - Crocosphaera watsonii
  - Cronobacter turicensis
  - Cryptobacterium curtum
  - Cupriavidus necator
  - Cupriavidus pinatubonensis
  - Cupriavidus taiwanensis
  - Cyanothece sp. ATCC 29155
  - Cyanothece sp. ATCC 51142
  - Cyanothece sp. CCY 0110
  - Cyanothece sp. PCC 7425
  - Cyanothece sp. PCC 7822
  - Cyanothece sp. PCC 8801
  - Cyanothece sp. RF-2
  - Cylindrospermopsis raciborskii CS-505
  - Cytophaga hutchinsonii
  - Dechloromonas aromatica
  - Deferribacter desulfuricans DSM 14783
  - Dehalococcoides ethenogenes
  - Dehalococcoides sp. BAV1
  - Dehalococcoides sp. CBDB1
  - Dehalococcoides sp. GT
  - Dehalococcoides sp. VS
  - Dehalogenimonas lykanthroporepellens
  - Deinococcus deserti
  - Deinococcus geothermalis
  - Deinococcus maricopensis
  - Deinococcus proteolyticus
  - Deinococcus radiodurans
  - Delftia acidovorans
  - Delta proteobacterium MLMS-1
  - Denitrovibrio acetiphilus
  - Dermacoccus sp. Ellin185
  - Desulfarculus baarsii
  - Desulfatibacillum alkenivorans
  - Desulfitobacterium hafniense DCB-2
  - Desulfitobacterium hafniense Y51
  - Desulfobacca acetoxidans
  - Desulfobacterium autotrophicum
  - Desulfococcus oleovorans
  - Desulfohalobium retbaense
  - Desulfomicrobium baculatum
  - Desulfonatronospira thiodismutans ASO3-1
  - Desulforudis audaxviator
  - Desulfotalea psychrophila
  - Desulfotomaculum acetoxidans
  - Desulfotomaculum nigrificans DSM 574
  - Desulfotomaculum reducens
  - Desulfovibrio aespoeensis
  - Desulfovibrio desulfuricans ATCC 27774
  - Desulfovibrio desulfuricans G20
  - Desulfovibrio fructosovorans JJ
  - Desulfovibrio magneticus
  - Desulfovibrio piger ATCC 29098
  - Desulfovibrio salexigens
  - Desulfovibrio sp. FW1012B
  - Desulfovibrio vulgaris DP4
  - Desulfovibrio vulgaris Hildenborough
  - Desulfovibrio vulgaris Miyazaki F
  - Desulfovibrio vulgaris RCH1
  - Desulfurispirillum indicum
  - Desulfurivibrio alkaliphilus
  - Desulfurobacterium thermolithotrophum
  - Desulfuromonas acetoxidans DSM 684
  - Dethiobacter alkaliphilus AHT 1
  - Dethiosulfovibrio peptidovorans DSM 11002
  - Dialister invisus DSM 15470
  - Dialister micraerophilus DSM 19965
  - Dialister microaerophilus UPII 345-E
  - Dichelobacter nodosus
  - Dickeya dadantii 3937
  - Dickeya dadantii Ech586
  - Dickeya dadantii Ech703
  - Dickeya zeae
  - Dictyoglomus thermophilum
  - Dictyoglomus turgidum
  - Dietzia cinnamea P4
  - Dinoroseobacter shibae
  - Dokdonia donghaensis MED134
  - Dorea formicigenerans ATCC 27755
  - Dorea longicatena DSM 13814
  - Dyadobacter fermentans
  - Edwardsiella ictaluri
  - Edwardsiella tarda ATCC 23685
  - Edwardsiella tarda EIB202
  - Edwardsiella tarda FL6-60
  - Eggerthella lenta
  - Eggerthella sp. 1_3_56FAA
  - Eggerthella sp. HGA1
  - Ehrlichia canis
  - Ehrlichia chaffeensis
  - Ehrlichia chaffeensis Sapulpa
  - Ehrlichia ruminantium ARC-OVI
  - Ehrlichia ruminantium CIRAD
  - Ehrlichia ruminantium Gardel
  - Eikenella corrodens ATCC 23834
  - Elusimicrobium minutum
  - Enhydrobacter aerosaccus SK60
  - Enterobacter cancerogenus ATCC 35316
  - Enterobacter cloacae ATCC 13047
  - Enterobacter cloacae NCTC 9394
  - Enterobacter cloacae SCF1
  - Enterobacter sakazakii
  - Enterobacter sp.
  - Enterobacteriaceae bacterium 9_2_54FAA
  - Enterococcus casseliflavus ATCC 12755
  - Enterococcus faecalis 62
  - Enterococcus faecalis ATCC 29200
  - Enterococcus faecalis DAPTO 512
  - Enterococcus faecalis DAPTO 516
  - Enterococcus faecalis HH22
  - Enterococcus faecalis OG1RF
  - Enterococcus faecalis PC1.1
  - Enterococcus faecalis R712
  - Enterococcus faecalis S613
  - Enterococcus faecalis TUSoD Ef11
  - Enterococcus faecalis TX0012
  - Enterococcus faecalis TX0017
  - Enterococcus faecalis TX0027
  - Enterococcus faecalis TX0031
  - Enterococcus faecalis TX0043
  - Enterococcus faecalis TX0102
  - Enterococcus faecalis TX0104
  - Enterococcus faecalis TX0109
  - Enterococcus faecalis TX0309A
  - Enterococcus faecalis TX0309B
  - Enterococcus faecalis TX0312
  - Enterococcus faecalis TX0411
  - Enterococcus faecalis TX0470
  - Enterococcus faecalis TX0630
  - Enterococcus faecalis TX0635
  - Enterococcus faecalis TX0645
  - Enterococcus faecalis TX0855
  - Enterococcus faecalis TX0860
  - Enterococcus faecalis TX1302
  - Enterococcus faecalis TX1332
  - Enterococcus faecalis TX1341
  - Enterococcus faecalis TX1342
  - Enterococcus faecalis TX1346
  - Enterococcus faecalis TX2134
  - Enterococcus faecalis TX2137
  - Enterococcus faecalis TX2141
  - Enterococcus faecalis TX4000
  - Enterococcus faecalis TX4244
  - Enterococcus faecalis TX4248
  - Enterococcus faecalis V583
  - Enterococcus faecium D344SRF
  - Enterococcus faecium DO
  - Enterococcus faecium E1039
  - Enterococcus faecium E1071
  - Enterococcus faecium E1162
  - Enterococcus faecium E1636
  - Enterococcus faecium E1679
  - Enterococcus faecium E980
  - Enterococcus faecium PC4.1
  - Enterococcus faecium TX0082
  - Enterococcus faecium TX0133A
  - Enterococcus faecium TX0133B
  - Enterococcus faecium TX0133C
  - Enterococcus faecium TX0133a01
  - Enterococcus faecium TX0133a04
  - Enterococcus faecium TX1330
  - Enterococcus faecium U0317
  - Enterococcus italicus DSM 15952
  - Enterococcus sp. 7L76
  - Eremococcus coleocola ACS-139-V-Col8
  - Erwinia amylovora ATCC 49946
  - Erwinia amylovora CFBP1430
  - Erwinia billingiae
  - Erwinia carotovora
  - Erwinia pyrifoliae DSM 12163
  - Erwinia pyrifoliae Ep1/96
  - Erwinia sp.
  - Erwinia tasmaniensis
  - Erysipelothrix rhusiopathiae ATCC 19414
  - Erysipelotrichaceae bacterium 3_1_53
  - Erythrobacter litoralis
  - Erythrobacter sp. NAP1
  - Erythrobacter sp. SD-21
  - Escherichia albertii TW07627
  - Escherichia coli 101-1
  - Escherichia coli 1180
  - Escherichia coli 1357
  - Escherichia coli 1827-70
  - Escherichia coli 2362-75
  - Escherichia coli 3431
  - Escherichia coli 53638
  - Escherichia coli 55989
  - Escherichia coli 83972
  - Escherichia coli ATCC 27325
  - Escherichia coli ATCC 33849
  - Escherichia coli ATCC 55124
  - Escherichia coli ATCC 8739
  - Escherichia coli ATCC 9637
  - Escherichia coli Austria
  - Escherichia coli B171
  - Escherichia coli B7A
  - Escherichia coli DH10B
  - Escherichia coli E110019
  - Escherichia coli E1167
  - Escherichia coli E128010
  - Escherichia coli E1520
  - Escherichia coli E22
  - Escherichia coli E482
  - Escherichia coli EC4100B
  - Escherichia coli EDL933
  - Escherichia coli EPECa14
  - Escherichia coli F11
  - Escherichia coli H120
  - Escherichia coli H252
  - Escherichia coli H263
  - Escherichia coli H489
  - Escherichia coli JGI
  - Escherichia coli Korea
  - Escherichia coli LT-68
  - Escherichia coli M863
  - Escherichia coli MC4100
  - Escherichia coli MG1655
  - Escherichia coli MS 107-1
  - Escherichia coli MS 110-3
  - Escherichia coli MS 116-1
  - Escherichia coli MS 117-3
  - Escherichia coli MS 119-7
  - Escherichia coli MS 124-1
  - Escherichia coli MS 145-7
  - Escherichia coli MS 146-1
  - Escherichia coli MS 153-1
  - Escherichia coli MS 16-3
  - Escherichia coli MS 175-1
  - Escherichia coli MS 182-1
  - Escherichia coli MS 185-1
  - Escherichia coli MS 187-1
  - Escherichia coli MS 196-1
  - Escherichia coli MS 198-1
  - Escherichia coli MS 200-1
  - Escherichia coli MS 21-1
  - Escherichia coli MS 45-1
  - Escherichia coli MS 57-2
  - Escherichia coli MS 60-1
  - Escherichia coli MS 69-1
  - Escherichia coli MS 78-1
  - Escherichia coli MS 84-1
  - Escherichia coli MS 85-1
  - Escherichia coli NC101
  - Escherichia coli O103:H2
  - Escherichia coli O111:H-
  - Escherichia coli O127:H6
  - Escherichia coli O139:H28
  - Escherichia coli O150:H5
  - Escherichia coli O157:- 2687
  - Escherichia coli O157:H- 493-89
  - Escherichia coli O157:H7 1044
  - Escherichia coli O157:H7 EC1212
  - Escherichia coli O157:H7 EC4042
  - Escherichia coli O157:H7 EC4045
  - Escherichia coli O157:H7 EC4076
  - Escherichia coli O157:H7 EC4113
  - Escherichia coli O157:H7 EC4115
  - Escherichia coli O157:H7 EC4196
  - Escherichia coli O157:H7 EC4206
  - Escherichia coli O157:H7 EC4401
  - Escherichia coli O157:H7 EC4486
  - Escherichia coli O157:H7 EC4501
  - Escherichia coli O157:H7 EC508
  - Escherichia coli O157:H7 EC869
  - Escherichia coli O157:H7 G5101
  - Escherichia coli O157:H7 LSU-61
  - Escherichia coli O157:H7 TW14359
  - Escherichia coli O157:H7 TW14588
  - Escherichia coli O17:K52:H18
  - Escherichia coli O18:K1:H7
  - Escherichia coli O1:K1 / APEC
  - Escherichia coli O26:H11
  - Escherichia coli O44:H18
  - Escherichia coli O45:K1
  - Escherichia coli O55:H7
  - Escherichia coli O55:H7 5905
  - Escherichia coli O55:H7 TW 07815
  - Escherichia coli O6
  - Escherichia coli O6:K15:H31
  - Escherichia coli O78:H11
  - Escherichia coli O7:K1
  - Escherichia coli O8
  - Escherichia coli O81
  - Escherichia coli O83:H1
  - Escherichia coli O9:H4
  - Escherichia coli OR:K5:H-
  - Escherichia coli REL606
  - Escherichia coli RN587/1
  - Escherichia coli SE11
  - Escherichia coli SMS-3-5
  - Escherichia coli STEC_7v
  - Escherichia coli Sakai
  - Escherichia coli TA007
  - Escherichia coli TW10509
  - Escherichia coli UM146
  - Escherichia coli UTI89
  - Escherichia coli WV_060327
  - Escherichia fergusonii
  - Escherichia fergusonii B253
  - Ethanoligenens harbinense
  - Eubacterium biforme DSM 3989
  - Eubacterium cellulosolvens 6
  - Eubacterium cylindroides T2-87
  - Eubacterium dolichum DSM 3991
  - Eubacterium eligens
  - Eubacterium hallii DSM 3353
  - Eubacterium limosum
  - Eubacterium rectale
  - Eubacterium rectale DSM 17629
  - Eubacterium rectale M104/1
  - Eubacterium saburreum DSM 3986
  - Eubacterium siraeum 70/3
  - Eubacterium siraeum DSM 15702
  - Eubacterium siraeum V10Sc8a
  - Eubacterium ventriosum ATCC 27560
  - Eubacterium yurii ATCC 43715
  - Exiguobacterium sibiricum
  - Exiguobacterium sp.
  - Faecalibacterium cf. prausnitzii KLE1255
  - Faecalibacterium prausnitzii A2-165
  - Faecalibacterium prausnitzii L2-6
  - Faecalibacterium prausnitzii M21/2
  - Faecalibacterium prausnitzii SL3/3
  - Ferrimonas balearica
  - Fervidobacterium nodosum
  - Fibrobacter succinogenes JCVI
  - Fibrobacter succinogenes JGI
  - Filifactor alocis
  - Finegoldia magna
  - Finegoldia magna ACS-171-V-Col3
  - Finegoldia magna ATCC 53516
  - Finegoldia magna BVS033A4
  - Flavobacteria bacterium BAL38
  - Flavobacteria bacterium BBFL7
  - Flavobacteria bacterium MS024-2A
  - Flavobacteriaceae bacterium
  - Flavobacteriales bacterium ALC-1
  - Flavobacterium johnsoniae
  - Flavobacterium psychrophilum
  - Fluviicola taffensis
  - Francisella novicida FTE
  - Francisella novicida FTG
  - Francisella philomiragia
  - Francisella tularensis FSC 198
  - Francisella tularensis FTNF002-00
  - Francisella tularensis LVS
  - Francisella tularensis NE061598
  - Francisella tularensis OSU18
  - Francisella tularensis WY96-3418
  - Francisella tularensis mediasiatica
  - Francisella tularensis novicida
  - Francisella tularensis tularensis
  - Frankia alni
  - Frankia sp. CcI3
  - Frankia sp. EAN1pec
  - Frankia sp. EUN1f
  - Frankia sp. EuI1c
  - Frankia symbiont of Datisca glomerata
  - Fulvimarina pelagi HTCC2506
  - Fusobacterium nucleatum ATCC 23726
  - Fusobacterium nucleatum ATCC 49256 vincentii
  - Fusobacterium nucleatum nucleatum
  - Fusobacterium periodonticum ATCC 33693
  - Gallionella capsiferriformans
  - Gardnerella vaginalis 409-05
  - Gardnerella vaginalis 5-1
  - Gardnerella vaginalis AMD
  - Gardnerella vaginalis ATCC 14019
  - Gemmatimonas aurantiaca
  - Geobacillus kaustophilus
  - Geobacillus sp. C56-T3
  - Geobacillus sp. G11MC16
  - Geobacillus sp. WCH70
  - Geobacillus sp. Y4.1MC1
  - Geobacillus sp. Y412MC10
  - Geobacillus sp. Y412MC52
  - Geobacillus sp. Y412MC61
  - Geobacillus thermodenitrificans
  - Geobacillus thermoglucosidasius C56-YS93
  - Geobacter bemidjiensis
  - Geobacter lovleyi
  - Geobacter metallireducens
  - Geobacter sp. FRC-32
  - Geobacter sp. M18
  - Geobacter sp. M21
  - Geobacter sulfurreducens ATCC 51573
  - Geobacter sulfurreducens DL-1
  - Geobacter uraniireducens
  - Geodermatophilus obscurus
  - Gloeobacter violaceus
  - Gluconacetobacter diazotrophicus
  - Gluconacetobacter diazotrophicus
  - Gluconacetobacter hansenii ATCC 23769
  - Gluconobacter oxydans
  - Gordonia bronchialis
  - Gordonia neofelifaecis NRRL B-59395
  - Gordonibacter pamelaeae 7-10-1-b
  - Gramella forsetii
  - Granulibacter bethesdensis
  - Granulicatella adiacens ATCC 49175
  - Grimontia hollisae CIP 101886
  - Haemophilus aegyptius ATCC 11116
  - Haemophilus ducreyi
  - Haemophilus influenzae 10810
  - Haemophilus influenzae 22.1-21
  - Haemophilus influenzae 22.4-21
  - Haemophilus influenzae 3655
  - Haemophilus influenzae 6P18H1
  - Haemophilus influenzae 7P49H1
  - Haemophilus influenzae 86-028NP
  - Haemophilus influenzae ATCC 51907
  - Haemophilus influenzae HK1212
  - Haemophilus influenzae NT127
  - Haemophilus influenzae PittAA
  - Haemophilus influenzae PittEE
  - Haemophilus influenzae PittGG
  - Haemophilus influenzae PittHH
  - Haemophilus influenzae PittII
  - Haemophilus influenzae R2846
  - Haemophilus influenzae R2866
  - Haemophilus influenzae R3021
  - Haemophilus influenzae RdAW
  - Haemophilus parainfluenzae
  - Haemophilus parainfluenzae ATCC 33392
  - Haemophilus parasuis
  - Haemophilus parasuis 29755
  - Haemophilus somnus 129Pt
  - Haemophilus somnus 2336
  - Hahella chejuensis
  - Halanaerobium praevalens
  - Halanaerobium sp.
  - Haliangium ochraceum
  - Halomonas elongata
  - Halorhodospira halophila
  - Halothermothrix orenii
  - Halothiobacillus neapolitanus
  - Hamiltonella defensa
  - Helicobacter acinonychis
  - Helicobacter felis
  - Helicobacter hepaticus
  - Helicobacter mustelae
  - Helicobacter pylori 2017
  - Helicobacter pylori 2018
  - Helicobacter pylori 26695
  - Helicobacter pylori 35A
  - Helicobacter pylori 51
  - Helicobacter pylori 52
  - Helicobacter pylori 908
  - Helicobacter pylori 98-10
  - Helicobacter pylori B128
  - Helicobacter pylori B38
  - Helicobacter pylori B8
  - Helicobacter pylori Cuz20
  - Helicobacter pylori F16
  - Helicobacter pylori F30
  - Helicobacter pylori F32
  - Helicobacter pylori F57
  - Helicobacter pylori G27
  - Helicobacter pylori Gambia94/24
  - Helicobacter pylori HPAG1
  - Helicobacter pylori India7
  - Helicobacter pylori J99
  - Helicobacter pylori Lithuania75
  - Helicobacter pylori P12
  - Helicobacter pylori PeCan4
  - Helicobacter pylori SJM180
  - Helicobacter pylori Sat464
  - Helicobacter pylori Shi470
  - Helicobacter pylori SouthAfrica7
  - Helicobacter pylori v225d
  - Helicobacter suis HS1
  - Helicobacter suis HS5
  - Heliobacterium modesticaldum
  - Herbaspirillum seropedicae
  - Herminiimonas arsenicoxydans
  - Herpetosiphon aurantiacus
  - Hippea maritima DSM 10411
  - Hirschia baltica
  - Hoeflea phototrophica DFL-43
  - Holdemania filiformis DSM 12042
  - Hydrogenivirga sp. 128-5-R1-1
  - Hydrogenobacter thermophilus
  - Hydrogenobaculum sp.
  - Hyphomicrobium denitrificans
  - Hyphomonas neptunium
  - Idiomarina baltica OS145
  - Idiomarina loihiensis
  - Ilyobacter polytropus
  - Intrasporangium calvum
  - Isosphaera pallida
  - Janibacter sp. HTCC2649
  - Jannaschia sp.
  - Janthinobacterium sp.
  - Jonesia denitrificans
  - Jonquetella anthropi E3_33 E1
  - Kangiella koreensis
  - Ketogulonicigenium vulgare
  - Kineococcus radiotolerans
  - Kingella denitrificans ATCC 33394
  - Kingella oralis ATCC 51147
  - Kitasatospora setae
  - Klebsiella pneumoniae 342
  - Klebsiella pneumoniae ATCC 13884 rhinoscleromatis
  - Klebsiella pneumoniae ATCC 700721
  - Klebsiella variicola
  - Kocuria rhizophila
  - Kordia algicida OT-1
  - Kosmotoga olearia
  - Kribbella flavida
  - Ktedonobacter racemifer DSM 44963
  - Kytococcus sedentarius
  - Labrenzia aggregata IAM 12614
  - Lachnospiraceae bacterium 4_1_37FAA
  - Lachnospiraceae bacterium 5_1_63FAA
  - Lachnospiraceae bacterium 8_1_57FAA
  - Lactobacillus acidophilus
  - Lactobacillus acidophilus
  - Lactobacillus acidophilus ATCC 4796
  - Lactobacillus amylolyticus DSM 11664
  - Lactobacillus amylovorus
  - Lactobacillus amylovorus
  - Lactobacillus antri DSM 16041
  - Lactobacillus brevis
  - Lactobacillus brevis ATCC 27305 gravesensis
  - Lactobacillus buchneri ATCC 11577
  - Lactobacillus casei ATCC 334
  - Lactobacillus casei BD-II
  - Lactobacillus casei BL23
  - Lactobacillus casei LC2W
  - Lactobacillus casei Zhang
  - Lactobacillus crispatus
  - Lactobacillus crispatus 214-1
  - Lactobacillus crispatus JV-V01
  - Lactobacillus delbrueckii ATCC 11842
  - Lactobacillus delbrueckii ATCC BAA-365
  - Lactobacillus delbrueckii DSM 20072 lactis
  - Lactobacillus delbrueckii ND02
  - Lactobacillus delbrueckii PB2003/044-T3-4
  - Lactobacillus delbrueckii subsp. bulgaricus
  - Lactobacillus fermentum ATCC 14931
  - Lactobacillus fermentum CECT 5716
  - Lactobacillus fermentum NBRC 3956
  - Lactobacillus gasseri
  - Lactobacillus gasseri 202-4
  - Lactobacillus gasseri 224-1
  - Lactobacillus gasseri JV-V03
  - Lactobacillus helveticus
  - Lactobacillus helveticus
  - Lactobacillus helveticus DSM 20075
  - Lactobacillus hilgardii ATCC 8290
  - Lactobacillus iners ATCC 55195
  - Lactobacillus iners DSM 13335
  - Lactobacillus iners LEAF 2052A-d
  - Lactobacillus iners LEAF 2053A-b
  - Lactobacillus iners LEAF 2062A-h1
  - Lactobacillus iners LEAF 3008A-a
  - Lactobacillus iners LactinV 01V1-a
  - Lactobacillus iners LactinV 03V1-b
  - Lactobacillus iners LactinV 09V1-c
  - Lactobacillus iners LactinV 11V1-d
  - Lactobacillus iners SPIN 2503V10-D
  - Lactobacillus iners UPII 143-D
  - Lactobacillus iners UPII 60-B
  - Lactobacillus jensenii 1153
  - Lactobacillus jensenii 208-1
  - Lactobacillus jensenii 269-3
  - Lactobacillus jensenii JV-V16
  - Lactobacillus johnsonii ATCC 33200
  - Lactobacillus johnsonii FI9785
  - Lactobacillus johnsonii NCC 533
  - Lactobacillus oris PB013-T2-3
  - Lactobacillus paracasei ATCC 25302
  - Lactobacillus plantarum ATCC 14917
  - Lactobacillus plantarum JDM1
  - Lactobacillus plantarum ST-III
  - Lactobacillus plantarum WCFS1
  - Lactobacillus reuteri 100-23
  - Lactobacillus reuteri CF48-3A
  - Lactobacillus reuteri DSM 20016
  - Lactobacillus reuteri JCM 1112
  - Lactobacillus reuteri MM2-3
  - Lactobacillus reuteri MM4-1
  - Lactobacillus reuteri SD2112
  - Lactobacillus rhamnosus HN001
  - Lactobacillus rhamnosus Helsinki
  - Lactobacillus rhamnosus LMS2-1
  - Lactobacillus rhamnosus Lc 705
  - Lactobacillus rhamnosus Tokyo
  - Lactobacillus ruminis ATCC 25644
  - Lactobacillus sakei
  - Lactobacillus salivarius ACS-116-V-Col5a
  - Lactobacillus salivarius ATCC 11741
  - Lactobacillus salivarius CECT 5713
  - Lactobacillus salivarius UCC118
  - Lactobacillus ultunensis DSM 16047
  - Lactobacillus vaginalis ATCC 49540
  - Lactococcus lactis
  - Lactococcus lactis
  - Lactococcus lactis
  - Lactococcus lactis IL1403
  - Lactococcus lactis KF147
  - Lactococcus lactis subsp. lactis
  - Laribacter hongkongensis
  - Lawsonia intracellularis
  - Leadbetterella byssophila
  - Leeuwenhoekiella blandensis MED217
  - Legionella drancourtii LLAP12
  - Legionella longbeachae
  - Legionella longbeachae D-4968
  - Legionella pneumophila 1
  - Legionella pneumophila 130b
  - Legionella pneumophila Corby
  - Legionella pneumophila Lens
  - Legionella pneumophila Paris
  - Legionella pneumophila Philadelphia 1
  - Leifsonia xyli xyli
  - Lentisphaera araneosa HTCC2155
  - Leptospira biflexa ATCC 23582
  - Leptospira biflexa Ames
  - Leptospira borgpetersenii JB197
  - Leptospira borgpetersenii L550
  - Leptospira interrogans
  - Leptospira interrogans copenhageni
  - Leptothrix cholodnii
  - Leptotrichia buccalis
  - Leptotrichia goodfellowii F0264
  - Leptotrichia hofstadii F0254
  - Leuconostoc citreum
  - Leuconostoc gasicomitatum
  - Leuconostoc kimchii
  - Leuconostoc mesenteroides
  - Leuconostoc mesenteroides ATCC 19254 cremoris
  - Liberibacter asiaticus
  - Liberibacter solanacearum
  - Limnobacter sp. MED105
  - Listeria grayi DSM 20601
  - Listeria innocua
  - Listeria innocua FSL J1-023
  - Listeria innocua FSL S4-378
  - Listeria ivanovii FSL F6-596
  - Listeria marthii FSL S4-120
  - Listeria monocytogenes 08-5578
  - Listeria monocytogenes 08-5923
  - Listeria monocytogenes 4a
  - Listeria monocytogenes 4c
  - Listeria monocytogenes Clip81459
  - Listeria monocytogenes EGD-e
  - Listeria monocytogenes F2365
  - Listeria monocytogenes F6854
  - Listeria monocytogenes F6900
  - Listeria monocytogenes FSL F2-208
  - Listeria monocytogenes FSL J1-194
  - Listeria monocytogenes FSL J2-071
  - Listeria monocytogenes FSL N1-017
  - Listeria monocytogenes FSL N3-165
  - Listeria monocytogenes FSL R2-503
  - Listeria monocytogenes H7858
  - Listeria monocytogenes HPB2262
  - Listeria monocytogenes J2818
  - Listeria seeligeri
  - Listeria seeligeri FSL N1-067
  - Listeria seeligeri FSL S4-171
  - Listeria welshimeri
  - Loktanella vestfoldensis SKA53
  - Lutiella nitroferrum 2002
  - Lyngbya sp. PCC 8106
  - Lysinibacillus fusiformis ZC1
  - Lysinibacillus sphaericus
  - Macrococcus caseolyticus
  - Magnetococcus sp.
  - Magnetospirillum gryphiswaldense
  - Magnetospirillum magneticum
  - Manganese-oxidizing bacterium
  - Mannheimia haemolytica BOVINE
  - Mannheimia haemolytica OVINE
  - Mannheimia succiniciproducens
  - Maribacter sp.
  - Maricaulis maris
  - Marine gamma proteobacterium HTCC2080
  - Marine gamma proteobacterium HTCC2143
  - Marinithermus hydrothermalis DSM 14884
  - Marinobacter adhaerens
  - Marinobacter algicola DG893
  - Marinobacter aquaeolei
  - Marinobacter sp. ELB17
  - Marinomonas mediterranea MMB-1
  - Marinomonas sp.
  - Marinomonas sp. MED121
  - Mariprofundus ferrooxydans PV-1
  - Marivirga tractuosa
  - Megamonas hypermegale ART12/1
  - Megasphaera genomosp. type_1 28L
  - Megasphaera micronuciformis F0359
  - Meiothermus ruber
  - Meiothermus silvanus
  - Mesoplasma florum
  - Mesorhizobium ciceri bv. biserrulae
  - Mesorhizobium opportunistum WSM2075
  - Mesorhizobium sp.
  - Methylacidiphilum infernorum
  - Methylibium petroleiphilum
  - Methylobacillus flagellatus
  - Methylobacter tundripaludum SV96
  - Methylobacterium chloromethanicum
  - Methylobacterium extorquens ATCC 14718
  - Methylobacterium extorquens DM4
  - Methylobacterium extorquens PA1
  - Methylobacterium nodulans
  - Methylobacterium populi
  - Methylobacterium radiotolerans
  - Methylobacterium sp.
  - Methylocella silvestris
  - Methylococcus capsulatus
  - Methylocystis sp. ATCC 49242
  - Methylosinus trichosporium OB3b
  - Methylotenera mobilis
  - Methylotenera sp.
  - Methylovorus sp. MP688
  - Methylovorus sp. SIP3-4
  - Microbacterium testaceum
  - Micrococcus luteus
  - Micrococcus luteus SK58
  - Microcystis aeruginosa
  - Micromonospora aurantiaca
  - Micromonospora sp.
  - Microscilla marina ATCC 23134
  - Mitsuokella multacida DSM 20544
  - Mobiluncus curtisii
  - Mobiluncus curtisii ATCC 35241
  - Mobiluncus curtisii ATCC 35242 holmesii
  - Mobiluncus curtisii ATCC 51333
  - Mobiluncus mulieris 28-1
  - Mobiluncus mulieris ATCC 35239
  - Mobiluncus mulieris ATCC 35243
  - Mobiluncus mulieris FB024-16
  - Moorella thermoacetica
  - Moraxella catarrhalis
  - Moraxella catarrhalis 101P30B1
  - Moraxella catarrhalis 103P14B1
  - Moraxella catarrhalis 46P47B1
  - Moraxella catarrhalis 7169
  - Moraxella catarrhalis BC1
  - Moraxella catarrhalis BC7
  - Moraxella catarrhalis BC8
  - Moraxella catarrhalis CO72
  - Moraxella catarrhalis O35E
  - Moritella sp. PE36
  - Mucilaginibacter paludis DSM 18603
  - Mycobacterium abscessus
  - Mycobacterium avium
  - Mycobacterium bovis AF2122/97
  - Mycobacterium bovis Pasteur 1173P2
  - Mycobacterium bovis Tokyo 172
  - Mycobacterium gilvum
  - Mycobacterium leprae Br4923
  - Mycobacterium leprae TN
  - Mycobacterium marinum
  - Mycobacterium parascrofulaceum ATCC BAA-614
  - Mycobacterium paratuberculosis
  - Mycobacterium smegmatis
  - Mycobacterium sp. JLS
  - Mycobacterium sp. KMS
  - Mycobacterium sp. MCS
  - Mycobacterium sp. Spyr1
  - Mycobacterium tuberculosis ATCC 25177
  - Mycobacterium tuberculosis ATCC 25618
  - Mycobacterium tuberculosis CDC1551A
  - Mycobacterium tuberculosis F11
  - Mycobacterium tuberculosis KZN 1435
  - Mycobacterium tuberculosis Oshkosh
  - Mycobacterium tuberculosis SUMu001
  - Mycobacterium tuberculosis SUMu002
  - Mycobacterium tuberculosis SUMu003
  - Mycobacterium tuberculosis SUMu004
  - Mycobacterium tuberculosis SUMu005
  - Mycobacterium tuberculosis SUMu006
  - Mycobacterium tuberculosis SUMu007
  - Mycobacterium tuberculosis SUMu008
  - Mycobacterium tuberculosis SUMu009
  - Mycobacterium tuberculosis SUMu010
  - Mycobacterium tuberculosis SUMu011
  - Mycobacterium tuberculosis SUMu012
  - Mycobacterium ulcerans
  - Mycobacterium vanbaalenii
  - Mycoplasma agalactiae 5632
  - Mycoplasma agalactiae PG2
  - Mycoplasma alligatoris A21JP2
  - Mycoplasma arthritidis
  - Mycoplasma bovis ATCC 25523
  - Mycoplasma capricolum
  - Mycoplasma conjunctivae
  - Mycoplasma crocodyli
  - Mycoplasma fermentans JER
  - Mycoplasma fermentans M64
  - Mycoplasma gallisepticum F
  - Mycoplasma gallisepticum R(high)
  - Mycoplasma gallisepticum passage15
  - Mycoplasma genitalium
  - Mycoplasma haemofelis
  - Mycoplasma hominis
  - Mycoplasma hyopneumoniae 168
  - Mycoplasma hyopneumoniae 232
  - Mycoplasma hyopneumoniae 7448
  - Mycoplasma hyopneumoniae J
  - Mycoplasma hyorhinis
  - Mycoplasma leachii
  - Mycoplasma mobile
  - Mycoplasma mycoides GM12 capri
  - Mycoplasma mycoides SC
  - Mycoplasma mycoides mycoides SC
  - Mycoplasma penetrans
  - Mycoplasma pneumoniae ATCC 15531
  - Mycoplasma pneumoniae M129
  - Mycoplasma pulmonis
  - Mycoplasma suis Illinois
  - Mycoplasma suis KI_3806
  - Mycoplasma synoviae
  - Myxococcus xanthus
  - NC10 bacterium 'Dutch sediment'
  - Nakamurella multipartita
  - Natranaerobius thermophilus
  - Nautilia profundicola
  - Neisseria bacilliformis ATCC BAA-1200
  - Neisseria cinerea ATCC 14685
  - Neisseria elongata ATCC 29315
  - Neisseria flavescens NRL30031/H210
  - Neisseria flavescens SK114
  - Neisseria gonorrhoeae ATCC 700825
  - Neisseria gonorrhoeae NCCP11945
  - Neisseria gonorrhoeae TCDC-NG08107
  - Neisseria lactamica
  - Neisseria lactamica ATCC 23970
  - Neisseria lactamica Y92-1009
  - Neisseria meningitidis
  - Neisseria meningitidis
  - Neisseria meningitidis 053442
  - Neisseria meningitidis 2a
  - Neisseria meningitidis 8013
  - Neisseria meningitidis 961-5945
  - Neisseria meningitidis A
  - Neisseria meningitidis ATCC 13091
  - Neisseria meningitidis B
  - Neisseria meningitidis CU385
  - Neisseria meningitidis ES14902
  - Neisseria meningitidis G2136
  - Neisseria meningitidis H44/76
  - Neisseria meningitidis M01-240013
  - Neisseria meningitidis M01-240149
  - Neisseria meningitidis M01-240355
  - Neisseria meningitidis M04-240196
  - Neisseria meningitidis M0579
  - Neisseria meningitidis M13399
  - Neisseria meningitidis M6190
  - Neisseria meningitidis N1568
  - Neisseria meningitidis NZ-05/33
  - Neisseria meningitidis OX99.30304
  - Neisseria meningitidis alpha14
  - Neisseria mucosa ATCC 25996
  - Neisseria mucosa C102
  - Neisseria polysaccharea ATCC 43768
  - Neisseria sicca ATCC 29256
  - Neisseria subflava NJ9703
  - Neorickettsia risticii
  - Neorickettsia sennetsu
  - Neptuniibacter caesariensis
  - Nitratifractor salsuginis
  - Nitratiruptor sp.
  - Nitrobacter hamburgensis
  - Nitrobacter sp. Nb-311A
  - Nitrobacter winogradskyi
  - Nitrococcus mobilis Nb-231
  - Nitrosococcus halophilus
  - Nitrosococcus oceani
  - Nitrosococcus watsoni
  - Nitrosomonas europaea
  - Nitrosomonas eutropha
  - Nitrosospira multiformis
  - Nocardia farcinica
  - Nocardioidaceae bacterium Broad-1
  - Nocardioides sp.
  - Nocardiopsis dassonvillei
  - Nodularia spumigena CCY 9414
  - Nostoc azollae
  - Nostoc punctiforme
  - Nostoc sp.
  - Novosphingobium aromaticivorans
  - Novosphingobium nitrogenifigens DSM 19370
  - Oceanibulbus indolifex HEL-45
  - Oceanicaulis alexandrii HTCC2633
  - Oceanicola batsensis HTCC2597
  - Oceanicola granulosus HTCC2516
  - Oceanithermus profundus
  - Oceanobacillus iheyensis
  - Ochrobactrum anthropi
  - Ochrobactrum intermedium LMG 3301
  - Oenococcus oeni
  - Oenococcus oeni ATCC BAA-1163
  - Oenococcus oeni AWRIB429
  - Oligotropha carboxidovorans
  - Olsenella uli
  - Onion yellows phytoplasma
  - Opitutaceae bacterium TAV2
  - Opitutus terrae
  - Oribacterium sinus F0268
  - Oribacterium sp. oral taxon 078 F0262
  - Orientia tsutsugamushi Boryong
  - Orientia tsutsugamushi Ikeda
  - Oscillatoria sp. PCC 6506
  - Oscillochloris trichoides DG6
  - Oxalobacteraceae bacterium IMCC9480
  - Paenibacillus curdlanolyticus YK9
  - Paenibacillus larvae B-3650
  - Paenibacillus polymyxa E681
  - Paenibacillus polymyxa SC2
  - Paenibacillus sp.
  - Paenibacillus vortex V453
  - Pantoea ananatis
  - Pantoea ananatis AJ13355