EMBOSS Seqret

Enter or paste a set of PROTEIN DNA RNA sequences in any supported format:

Or, upload a file:

• INPUT FORMAT
  Unknown format GCG sequence format GCG old (version 8) sequence format EMBL entry format Swissprot entry format NBRF/PIR entry format PDB protein databank format ATOM lines PDB protein databank format SEQRES lines PDB protein databank format nucleotide ATOM lines PDB protein databank format nucleotide SEQRES lines FASTA format including NCBI-style IDs Plain old fasta format with IDs not parsed further FASTQ short read format ignoring quality scores FASTQ short read format with phred quality FASTQ Illumina 1.3 short read format FASTQ Solexa/Illumina 1.0 short read format Sequence Alignment/Map (SAM) format Genbank entry format Genbank/DDBJ entry format (alias) Refseq entry format Refseq protein entry format Codata entry format DNA strider output format Clustalw output format Phylip interleaved and non-interleaved formats Phylip non-interleaved format ACE sequence format ACE sequence format ACEDB sequence format Fasta format variant with database name before ID GCG MSF (multiple sequence file) file format Hennig86 output format Jackknifer interleaved and non-interleaved formats Nexus/paup interleaved format Treecon output format Mega interleaved and non-interleaved formats Intelligenetics sequence format strict parser Intelligenetics sequence format Old staden package sequence format Plain text GFF feature file with sequence in the header GFF3 feature file with sequence GFF3 feature file with sequence Stockholm (pfam) format Selex format Fitch program format Biomart tab-delimited results Mase program format Raw sequence with no non-sequence characters Staden experiment file ABI trace file Binary Sequence Alignment/Map (BAM) format Ensembl SQL format
• OUTPUT FORMAT
  EMBL entry format Unknown format GCG sequence format GCG old (version 8) sequence format EMBL new entry format Swissprot entry format Swissprot entry format (swold) Swissprot entry format (swissold) Swissprot entry format (swissprotold) Swissprot entry format (swissnew) FASTA format NCBI fasta format with NCBI-style IDs NCBI fasta format with NCBI-style IDs using GI number NBRF/PIR entry format Genbank entry format Genbank/DDBJ entry format (alias) Genpept entry format Refseq entry format Refseqp entry format GFF2 feature file with sequence in the header GFF3 feature file with sequence in FASTA format after GFF3 feature file with sequence in FASTA format after Intelligenetics sequence format Codata entry format DNA strider output format ACEDB sequence format Staden experiment file Old staden package sequence format Plain text Fitch program format GCG MSF (multiple sequence file) file format Clustalw multiple alignment format Selex format Phylip interleaved format Phylip non-interleaved format NCBI ASN.1 format Hennig86 output format Mega interleaved output format Mega non-interleaved output format Nexus/paup interleaved format Nexus/paup non-interleaved format Jackknifer output interleaved format Jackknifer output non-interleaved format Treecon output format Mase program format DASDNA DAS nucleotide-only sequence DASSEQUENCE DAS any sequence FASTQ short read format with phred quality FASTQ short read format with phred quality FASTQ Illumina 1.3 short read format FASTQ Solexa/Illumina 1.0 short read format Sequence alignment/map (SAM) format Binary sequence alignment/map (BAM) format Debugging trace of full internal data content

• FEATURE
  yes no
• FIRST ONLY
  yes no
• REVERSE
  yes no
• OUTPUT CASE
  No change lower case UPPER CASE
• SEQUENCE RANGE