FASTA/SSEARCH - LGIC Nucleotide Similarity Search

• LGIC NUCLEOTIDE DATABASES
  • LGICdb Nucleic Acid
• OTHER TYPES

  General

  • Protein Databases
  • Nucleotide Databases

  Specialised

  • Proteomes Databases
  • Genomes Databases
  • WGS Databases
  • ASD Protein Databases
  • ASD Nucleotide Databases
  • LGIC Protein Databases

Enter or paste a PROTEIN DNA RNA sequence in any supported format:

or Upload a file:

• PROGRAM
  FASTA SSEARCH TFASTX TFASTY

• MATRIX
  N/A
• MATCH/MISMATCH SCORES
  +5/-4 +3/-2 N/A
• GAP OPEN
  -23 -22 -21 -20 -19 -18 -17 -16 -15 -14 -13 -12 -11 -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0
• GAP EXTEND
  0 -1 -2 -3 -4 -5 -6 -7 -8
• KTUP
  2 N/A
• EXPECTATION UPPER VALUE
  1e-600 1e-300 1e-100 1e-50 1e-10 1e-5 0.001 0.1 1 2 5 10 20 50
• EXPECTATION LOWER VALUE
  0 (default) 1e-300 1e-100 1e-50 1e-10 1e-5 0.001 0.1 1 2 5 10 20 50
• DNA STRAND
  N/A both top bottom
• HISTOGRAM
  no yes
• FILTER
  none
• STATISTICAL ESTIMATES
  Regress
• SCORES
  10 20 30 40 50 60 70 80 90 100 150 200 250 500 750 1000
• ALIGNMENTS
  10 20 30 40 50 60 70 80 90 100 150 200 250 500 750 1000
• SEQUENCE RANGE
• DATABASE RANGE