DaliLite computes optimal and suboptimal structural alignments between two protein structures. It will compare all chains in the first structure against all chains in the second (unless specific chain IDs are given). The resulting superimposed coordinate files can be downloaded or viewed interactively in Jmol.
The DaliLite services have been retired. To access similar services, please visit the structure tools page. If you have any questions/concerns please contact us via the feedback link above.