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Pepinfo (EMBOSS)
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Create a variety of plots that display different amino acid properties, such as hydropathy or charged residues, and their position in the sequence
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Pepstats (EMBOSS)
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Calculate properties of your protein such as molecular weight
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Pepwindow (EMBOSS)
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Draw a hydropathy plot for your protein sequence
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SAPS
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Evaluate a wide variety of additional protein sequence properties
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Cpgplot (EMBOSS)
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Identify and plot CpG islands in nucleotide sequence(s)
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Newcpgreport (EMBOSS)
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Identify CpG islands in nucleotide sequence(s)
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Isochore (EMBOSS)
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Plot isochores in DNA sequences