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This page (revision-14) was last changed on 10-Jul-2014 13:17 by Andrew Tikhonov

This page was created on 02-Jun-2011 09:10 by Rodrigo Santamaria

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At line 19 changed 2 lines
# __Choose a dataset to preprocess or upload your own data__
\\ aPE can be used on the EBI R-Cloud to pre-process private datasets by uploading its corresponding CEL files to your R/Bioconductor Workbench account.
# __Choose a dataset to preprocess or upload your own data__ \\ aPE can be used on the EBI R-Cloud to pre-process private datasets by uploading its corresponding CEL files to your R/Bioconductor Workbench account.
At line 22 changed 3 lines
You can use this [interface|http://www.ebi.ac.uk/arrayexpress/] to search for a dataset.\\
# __Launch the R-Cloud Workbench, register and create a new project__
\\ The EBI R-Cloud is a new service at the EBI which allows R users to log in and run distributed computational jobs remotely on its powerful 64-bit linux cluster. This is available through a Java client called the ArrayExpress R/Bioconductor Workbench. Open the following address in a browser and follow the instructions on the page to download or launch the Workbench: [http://www.ebi.ac.uk/tools/rcloud] \\\\
You can use this [interface|http://www.ebi.ac.uk/arrayexpress/] to search for a dataset.\\ \\
# __Launch the R-Cloud Workbench, register and create a new project__ \\ The EBI R-Cloud is a new service at the EBI which allows R users to log in and run distributed computational jobs remotely on its powerful 64-bit linux cluster. This is available through a Java client called the ArrayExpress R/Bioconductor Workbench. Open the following address in a browser and follow the instructions on the page to download or launch the Workbench: [http://www.ebi.ac.uk/tools/rcloud] \\\\
At line 27 changed 2 lines
# __Run the whole pipeline__
\\ If your CEL files are in a folder 'td', running affyParaEBI within R is straightforward with the following simple code:
# __Pre-process your data__ \\ If your CEL files are in a folder 'td', running affyParaEBI within R is straightforward with the following simple code:
Version Date Modified Size Author Changes ... Change note
14 10-Jul-2014 13:17 3.621 kB Andrew Tikhonov to previous
13 10-Jul-2014 09:44 3.611 kB 172.18.6.30 to previous | to last
12 10-Jul-2014 09:40 3.647 kB 172.18.6.30 to previous | to last
11 25-Apr-2014 13:01 3.89 kB ZnivFv to previous | to last
10 27-Sep-2013 17:17 3.713 kB Andrew Tikhonov to previous | to last
9 10-Jan-2012 11:43 3.643 kB Andrew Tikhonov to previous | to last
8 02-Jun-2011 10:04 3.635 kB Rodrigo Santamaria to previous | to last
7 02-Jun-2011 09:58 3.647 kB Rodrigo Santamaria to previous | to last
6 02-Jun-2011 09:57 3.651 kB Rodrigo Santamaria to previous | to last
5 02-Jun-2011 09:50 3.662 kB Rodrigo Santamaria to previous | to last
4 02-Jun-2011 09:48 3.731 kB Rodrigo Santamaria to previous | to last
3 02-Jun-2011 09:34 0.931 kB Rodrigo Santamaria to previous | to last
2 02-Jun-2011 09:17 2.498 kB Rodrigo Santamaria to previous | to last
1 02-Jun-2011 09:10 1.787 kB Rodrigo Santamaria to last
« This page (revision-14) was last changed on 10-Jul-2014 13:17 by Andrew Tikhonov