Pairwise Sequence Alignment (NUCLEOTIDE)

EMBOSS Water uses the Smith-Waterman algorithm (modified for speed enhancements) to calculate the local alignment of two sequences.

This is the form for nucleotide sequences. Please go to the protein form if you wish to align protein sequences.

STEP 1 - Enter your nucleotide sequences

your first nucleotide sequence in any supported format:

Or, a file:

AND

your second nucleotide sequence in any supported format:

Or, a file:

STEP 2 - Set your pairwise alignment options
STEP 3 - Submit your job
(Tick this box if you want to be notified by email when the results are available)
If available, the title will be included in the subject of the notification email and can be used as a way to identify your analysis

If you plan to use these services during a course please contact us.