MAFFT < Multiple Sequence Alignment

Multiple Sequence Alignment

MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program.

We have recently changed the default parameter settings for MAFFT. Alignments should run much more quickly and larger DNA alignments can be carried out by default. Please click the 'More options' button to review the defaults and change them if required.

Important note: This tool can align up to 500 sequences or a maximum file size of 1 MB.

STEP 1 - Enter your input sequences

Enter or paste a set of sequences in any supported format:

Or upload a file:

STEP 2 - Set your Parameters

OUTPUT FORMAT

MATRIX (PROTEIN ONLY)
GAP OPEN PENALTY
GAP EXTENSION PENALTY
ORDER
TREE REBUILDING NUMBER
GUIDE TREE OUTPUT
MAXITERATE
PERFORM FFTS

STEP 3 - Submit your job

Be notified by email (Tick this box if you want to be notified by email when the results are available)

EMAIL:

TITLE: If available, the title will be included in the subject of the notification email and can be used as a way to identify your analysis

If you plan to use these services during a course please contact us.