The HMMER web server: fast and sensitive homology searches.
This site has been designed to provide near interactive searches for most queries,
coupled with intuitive and interactive results visualisations

Quickstart tutorial:

Blog News August, 2015

hmmer.org is updating

hmmer.org is moving off of Janelia tonight, into the great cloud. You may see some flakiness as DNS nameservers update.

more...

Recent Papers

HMMER web server: 2015 update
R.D. Finn, J. Clements, W. Arndt, B.L. Miller, T.J. Wheeler, F. Schreiber, A. Bateman and S.R. Eddy
Nucleic Acids Research (2015) Web Server Issue 43:W30-W38. PDF

HMMER web server: interactive sequence similarity searching
R.D. Finn, J. Clements and S.R. Eddy
Nucleic Acids Research (2011) Web Server Issue 39:W29-W37. PDF

more...