The Geuvadis project aims to bring together the knowledge and resources
on medical genome and transcriptome sequencing in Europe. This browser is for viewing results of the Geuvadis RNA-sequencing
project, where mRNA and small RNA sequencing data from lymphoblastoid cell lines of 465 individuals were combined with genome
sequencing data of the same individuals provided by the 1000 Genomes Project, in order
to characterize regulatory variation in human populations. The samples in this project are from five populations, with 89-95
samples analyzed in each: the CEPH (CEU), Finns (FIN), British (GBR), Toscani (TSI) and Yoruba (YRI), of which CEU, FIN, GBR
and TSI were analyzed jointly as EUR.
Please cite Lappalainen et al. 2013 Nature [ http://dx.doi.org/10.1038/nature12531 ]
in presentations and publications using this data. For further details of methods and data usage, see the Geuvadis RNA-sequencing project
webpage: http://www.geuvadis.org/web/geuvadis/RNAseq-project.
This browser is for visualization and download of exon and transcript quantifications of protein-coding genes and miRNAs, and
quantitative trait loci (QTL) for exon expression levels (eQTL), transcript ratios (trQTL), and miRNA expression levels (mirQLTs).
If you have any questions about tracks, data and the browser, please contact Andrew Tikhonov.
Raw FASTQ and BAM files:Experiment information in ArrayExpressRaw FASTQ data in ENA BAM files in ArrayExpress |
Analysis results and other data:Genotype dataFull data files for download |
Other links:Geuvadis consortiumBrowser for expression levels by population |
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