Dbfetch
ID CP009965; SV 1; circular; genomic DNA; STD; PRO; 4983 BP. XX AC CP009965; XX PR Project:PRJNA238054; XX DT 06-FEB-2015 (Rel. 123, Created) DT 29-MAY-2015 (Rel. 124, Last updated, Version 2) XX DE Bacillus cereus E33L plasmid pBCO_5, complete sequence. XX KW . XX OS Bacillus cereus E33L OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; OC Bacillus cereus group. OG Plasmid pBCO_5 XX RN [1] RC Publication Status: Online-Only RP 1-4983 RX PUBMED; 25931591. RA Johnson S.L., Daligault H.E., Davenport K.W., Jaissle J., Frey K.G., RA Ladner J.T., Broomall S.M., Bishop-Lilly K.A., Bruce D.C., Gibbons H.S., RA Coyne S.R., Lo C.C., Meincke L., Munk A.C., Koroleva G.I., Rosenzweig C.N., RA Palacios G.F., Redden C.L., Minogue T.D., Chain P.S.; RT "Complete genome sequences for 35 biothreat assay-relevant bacillus RT species"; RL Genome Announc 3(2):0(2015). XX RN [2] RP 1-4983 RA Bishop-Lilly K.A., Broomall S.M., Chain P.S., Chertkov O., Coyne S.R., RA Daligault H.E., Davenport K.W., Erkkila T., Frey K.G., Gibbons H.S., Gu W., RA Jaissle J., Johnson S.L., Koroleva G.I., Ladner J.T., Lo C.-C., RA Minogue T.D., Munk C., Palacios G.F., Redden C.L., Rosenzweig C.N., RA Scholz M.B., Teshima H., Xu Y.; RT ; RL Submitted (18-NOV-2014) to the INSDC. RL Bioscience, Los Alamos National Laboratory, P.O. Box 1663, MS M888, Los RL Alamos, NM 87545, USA XX DR MD5; d17419d5bda98e620f79c1f6b4e14d3b. DR BioSample; SAMN03199333. DR EuropePMC; PMC4417687; 25931591. XX CC The DNA was obtained from USAMRIID. CC ##Genome-Assembly-Data-START## CC Assembly Date :: 04-NOV-2014 CC Assembly Method :: Newbler v. 2.6; Velvet v. 1.2.08; Allpaths CC v. 44837; Phrap v. SPS - 4.24; HGAP v. CC 2.2.0 CC Genome Coverage :: 344x CC Sequencing Technology :: Illumina; PacBio; 454 CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4983 FT /organism="Bacillus cereus E33L" FT /plasmid="pBCO_5" FT /host="zebra" FT /strain="E33L" FT /mol_type="genomic DNA" FT /country="Namibia:Etosha National Park" FT /isolation_source="Animal, carcass of dead zebra" FT /collection_date="1996" FT /note="common: Zebra Killer" FT /db_xref="taxon:288681" FT gene complement(18..584) FT /locus_tag="BF28_6035" FT CDS complement(18..584) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BF28_6035" FT /product="firmicute plasmid replication family protein" FT /db_xref="EnsemblGenomes-Gn:BF28_6035" FT /db_xref="EnsemblGenomes-Tr:AJI25879" FT /protein_id="AJI25879.1" FT /translation="MALEVLQLDKEHEEKKITVELTSDELKKIQKLLEIEEEKEKTEEQ FT REEEKKNYNFIQLYRDNMPELRWLMTKQPFASSLLFFILEHMDNRNALACSYSVFEDYF FT GKSRMTIYRAIKTLEENGFIDVLKMGTSNIYLVNENLAWTDKNTSKKFAKYDGKILVSK FT KENKDYQYRSQFDRFKALRERENLK" FT gene complement(1257..1667) FT /locus_tag="BF28_6036" FT CDS complement(1257..1667) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BF28_6036" FT /product="hypothetical protein" FT /note="conserved hypothetical protein" FT /db_xref="EnsemblGenomes-Gn:BF28_6036" FT /db_xref="EnsemblGenomes-Tr:AJI25882" FT /protein_id="AJI25882.1" FT /translation="MKKYISIFSLFVMLLTGCQFQKEENIPGIEQLESVKEIKISNFKK FT LDSLNENFNKSFSKKNEIGTFKNAMKTAKNQKQNITEYDYNIQIIFNDDSNKALHIAKT FT NEKKIILKYIGENTDTYVIDAKDSKELITLIY" FT gene 1775..2680 FT /locus_tag="BF28_6037" FT CDS 1775..2680 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BF28_6037" FT /product="hypothetical protein" FT /note="conserved hypothetical protein" FT /db_xref="EnsemblGenomes-Gn:BF28_6037" FT /db_xref="EnsemblGenomes-Tr:AJI25880" FT /protein_id="AJI25880.1" FT /translation="MGILFKKGLLSTVCVTAMASLLTFSPLVTSAKTDTTQVKTASKHE FT HSVQKGEITLKYTAPDVDLSTVTPEQKETLEKIGWKVENGILVQYRSIPEEVKKAIDLG FT YLEPLEEVNHQKHNAPTTFSNHEDHTGHEEIEEVLIVNGEKVEIKDGRFDVKGNPDTLE FT VQIDKDTKQTVQKSEDGKYHLVLEQNLSEVIEKMDNHEGHDNMTHADQSLLNPFSDVTY FT GYGDTYRNGDWVHCNRFNGPLSDNRHLRKTNPQAIINFYMSDCDLGALRYCLNHANCNQ FT KYRAAYCSWKLGHSEKYHKH" FT gene 2779..3057 FT /locus_tag="BF28_6038" FT CDS 2779..3057 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BF28_6038" FT /product="putative membrane protein" FT /db_xref="EnsemblGenomes-Gn:BF28_6038" FT /db_xref="EnsemblGenomes-Tr:AJI25881" FT /protein_id="AJI25881.1" FT /translation="MSLTLLTTTLLLILISNFIIKNLLKNKIKKTTLNFISSVVVLPGI FT SLFWLITYTCDLPFNIFLSFYFPLIITIFLILMLIINLIKLIKNVDV" FT gene 3658..4893 FT /locus_tag="BF28_6039" FT CDS 3658..4893 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BF28_6039" FT /product="plasmid recombination enzyme family protein" FT /db_xref="EnsemblGenomes-Gn:BF28_6039" FT /db_xref="EnsemblGenomes-Tr:AJI25878" FT /protein_id="AJI25878.1" FT /translation="MSYAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESERTHLNYD FT LHNDGHIDYLKTVKDKIEQNVETNRAIRKDAVVMCEFVVTSDKEFFDVLDMVDPVQQKV FT FFKEAYNFLKNRYGEQNIVHAAVHLDEKTPHMHVGMVPVTEENKLSAKQIFNRKELVSL FT QDDFHAHMVEKGFYLERGVSSDKKHVEMRKLKAMTAKEEIKALEKEMGQCLQKKEVVNK FT QMEQLESRLNQLQNAVKSTNKVDKMEVKHKGGILRSKTVEMSVEDFEELKTKAKASEAF FT KRENMTLHRKNEALQASNTDLHTTVKRLEKENEGLKPYKARYERLAKLMDEMNKFYEKF FT IPKELSKFHEIIGFCKRKVNASINRFSSLRYSEKELNENEKRGYETASKFLENQRKEQK FT QQRKERGDEREL" XX SQ Sequence 4983 BP; 1777 A; 698 C; 838 G; 1670 T; 0 other; aataaaaatg attactctta ttttagattt tctctttctc ttaatgcttt gaatctatca 60 aattggcttc gatattgata atctttattt tcttttttgc taacaagaat tttaccatca 120 tattttgcga attttttact tgtgttttta tctgtccagg caaggttttc attgactaaa 180 taaatatttg atgtacccat ttttaatacg tcaataaaac cgttttcttc aagggtttta 240 atcgctctat aaattgtcat tctcgatttt ccgaaataat cttcaaaaac tgaatatgaa 300 caggctaaag cattacggtt gtccatatgt tctagtataa aaaataacaa actactagca 360 aatggctgtt ttgtcattaa ccaacgtaat tcaggcatat tatcacgata caattgaata 420 aagttatagt tctttttttc ttcttctctt tgttcttctg tcttctcttt ttcttcctca 480 atctctaata atttttgaat ttttttcaat tcatcactag tcaattcaac tgtaatcttt 540 ttttcttcat gttctttatc caattgcaac acctctaacg ccatattttt aaccctccta 600 tgtatcacaa gttatgatac atttatgtat caactttgtt acatcgtata acaaaaagta 660 taacacgtaa agaataattt gttacatgac gtaacataaa tgtatcacaa gctatgttac 720 atttatgtat cacaagctat gttacattta ctctttaaaa acccttattt atcaatgttt 780 ttcagcctgt ccctttctat atctcctagt agggcttttc tctatgcaat ggtcaggtag 840 tatttttttg agaaccccac tcaaaaaaat ctccaccttt cctccattgc atggagaaat 900 tcggctggtt tttagctttc gccaagccga acataccaaa aacaaggatt taggttgttc 960 gacttggact agcaattgta ccagccgaac cgcctagatc catcgaccaa aacattcagc 1020 tttttctata ttcagttacg ttaagttcgt ggggtttagc ccccacacga ctagccagca 1080 ttcacaccca aaaacaagga gaaaaatttt taaaaccaaa tactagattt tggtttattc 1140 tcttttaata ccgaagaggc caaataagcc cctttaatat aaaaaaagac caacttttag 1200 ttggtctttt tttatatttg attttgtgat tcaaaaaatt attttattaa taacatttaa 1260 taaataagtg ttattaattc tttagaatct ttagcatcaa taacatatgt gtctgtattt 1320 tcaccaatgt attttaaaat aattttcttt tcattagttt tagctatatg taaagcttta 1380 ttagaatcat cattaaatat tatttgtata ttatagtcat attctgttat attttgcttt 1440 tggtttttag cggttttcat ggcattttta aaagtaccaa tttcgttttt cttagaaaaa 1500 gatttattaa aattttcatt taaagaatct agttttttaa aattagatat ttttatttct 1560 tttacacttt ctaactgttc aattccaggt atgttttctt ctttttgaaa ttgacatcct 1620 gttaatagca ttacaaacaa tgaaaatata gaaatatact ttttcatatt agccctccat 1680 tttagattta ttattataat attaaaactt aaacgaaatt tccaataatt gtgttatact 1740 agtattgttt taaaaataat atatttgtaa ggggatggga attttgttta aaaaaggatt 1800 attaagtact gtttgtgtaa cagcaatggc aagtttactt actttttctc cattggtaac 1860 ttcagctaaa acagatacca cccaagttaa gacagcatct aaacatgaac attctgttca 1920 aaaaggagaa attacactta aatacacagc acctgatgtt gatttaagta cagtaactcc 1980 agaacaaaaa gaaactttag aaaaaatagg ttggaaagta gaaaatggta ttcttgtaca 2040 atatcgttca attccagaag aagttaaaaa agctatagac ctagggtatc ttgaaccttt 2100 agaagaagta aatcatcaaa aacataatgc acctactact ttttcaaacc atgaagatca 2160 tacaggtcat gaagaaattg aagaagtttt aattgttaat ggtgaaaagg tagaaataaa 2220 agatggacgt tttgatgtaa aaggtaatcc tgatacatta gaagttcaaa ttgataaaga 2280 tactaaacag acagttcaaa aaagtgaaga tggtaaatat catttagtat tagaacaaaa 2340 tttaagtgaa gtaattgaaa agatggacaa tcatgagggt catgataata tgactcatgc 2400 tgatcaatca cttttaaatc ctttttcaga tgtaacttat ggttatggag atacttatag 2460 aaatggtgat tgggtacatt gtaacagatt taatggtcct ctttctgata atagacattt 2520 acggaaaact aatcctcaag ctattatcaa tttttatatg agtgattgtg atcttggtgc 2580 acttagatat tgtttaaatc atgcaaattg taatcaaaaa tatagagctg catattgttc 2640 ttggaaactt ggacatagcg aaaaatatca taaacattaa aaatatcaaa caaaaaagag 2700 gggaaatctc ctctttttat ttttgatatt tttaaataaa taattctttt caattatgga 2760 agggagatgt tttattgtat gagtttgaca ctattaacaa caacattact acttatttta 2820 atttctaatt ttattattaa aaatctgtta aaaaacaaaa taaaaaaaac tactcttaat 2880 tttattagta gtgtagtagt attaccagga atctctttat tttggttaat tacttatact 2940 tgtgatttac catttaatat ttttttaagt ttttattttc cattaattat tacgatattt 3000 ttaattctaa tgttaataat taatttaatt aagttgatta aaaatgttga tgtatagttt 3060 tataattatt tgaagtgata tttattttaa ggggtctctc gaattgtctg agggattttt 3120 ttgtttttcg atgttttata tgtgtaggag aatatacaag tattacaaat gaatttgaaa 3180 cgttttaagg gtatatagca agttttaatc gtattcgttt tatagaaaaa aagaattaaa 3240 aaggctagtg ctgaaataga taagaggtag ttgcatggcg tgtgtcaacg gtaccggacc 3300 gaacccgaaa gggtgcggga ggataaggag ttgacacact tactatgcga ccctctgggc 3360 attgaacaaa ctacggtttg ttcctgccaa ccggcgaggg agcccctcaa ggattgaggg 3420 gttggggagt tcgattaagg gggtctgggg aagagttccc cagtgggttt gggcaacgcc 3480 caaggttttt attcggcaag ccgaatcctc cgtaggagca cactctttac gatagtaaag 3540 tatagtgtgc tatactttac atggaagtcc accgaaaaac agtagagaag tatatatact 3600 ttatatggtt ctagggactg ataaggacgt agaaccatat ggaaaagagg cgaaaaaatg 3660 agttatgcaa tttgccgaat gcagaaattt aaaatgcgag atgtgaaggg aattcagatt 3720 cataatcaga gagagaaaga gagtcacaca aatcatgata ttgaatcgga gcgaacacat 3780 cttaattatg atttacataa tgatggccac attgattatt taaaaacagt gaaagacaag 3840 attgaacaaa atgtagagac caatcgggcg attcgaaaag atgcggttgt gatgtgtgag 3900 tttgtggtaa caagcgataa agaatttttt gatgtgctag atatggttga tccagttcaa 3960 caaaaggtgt ttttcaaaga agcttataat tttttaaaaa atagatatgg ggaacaaaat 4020 attgtgcatg cagcggtgca tttggatgag aaaacacctc atatgcacgt tggcatggtt 4080 ccagtaacgg aagaaaataa gttatcagcc aaacaaattt ttaaccgaaa agaattggtt 4140 tcactccagg acgattttca cgctcacatg gtagaaaagg gcttttattt ggaacgtggt 4200 gtatcaagtg acaaaaaaca tgtagaaatg cgaaaactta aggcaatgac cgcaaaggaa 4260 gagataaaag ctttagaaaa agagatggga caatgcctac agaaaaaaga agtagtaaat 4320 aaacaaatgg aacaattaga atctcgtttg aatcaattac aaaatgcagt gaaatcaaca 4380 aataaagtcg ataagatgga agttaaacat aaaggtggta ttttacgctc taaaaccgtt 4440 gaaatgagcg tagaagactt tgaagagctc aaaactaagg cgaaggcatc agaagccttt 4500 aaacgtgaaa atatgacgtt acatcgcaag aatgaagcat tacaagcaag taatacagat 4560 ttacatacaa cagtgaaacg attggaaaaa gaaaatgaag ggctgaagcc gtataaagcc 4620 agatatgaac gtctagcaaa attaatggat gaaatgaata aattttatga gaagtttatt 4680 ccaaaagaac tgtctaaatt tcatgagatt attggttttt gtaagagaaa agtaaatgca 4740 tctataaata gatttagttc tcttagatat tcggaaaaag aattaaatga aaatgagaaa 4800 agaggttatg aaacagcatc aaagtttctc gaaaatcaac gaaaagaaca aaaacaacaa 4860 agaaaagaac gtggagatga aagagaactt tgataggaga gttgtcaatg aaaaagctaa 4920 agagaaatgc aattcaatgt cgaaaatgtg gtgatgtaat tgaatccaag ttcactcatg 4980 att 4983 //