Dbfetch
ID CP001984; SV 1; circular; genomic DNA; STD; PRO; 5428 BP. XX AC CP001984; DQ418780; XX PR Project:PRJNA30165; XX DT 21-APR-2010 (Rel. 104, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 5) XX DE Bacillus megaterium QM B1551 plasmid pBM100, complete sequence. XX KW . XX OS Bacillus megaterium QM B1551 OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus. OG Plasmid pBM100 XX RN [1] RP 1-5428 RA Stevenson D.M., Zhou Y., Mueller K., Jablonski L., Vary P.S.; RT "Replicons of the Indigenous Plasmids of Bacillus megaterium QM B1551"; RL Plasmid 37:232-232(1997). XX RN [2] RP 1-5428 RA Kunnimalaiyaan M., Zhou Y., Scholle M., Baisa G.A., Vary P.S.; RT "Discoveries within the Seven Plasmid Array of Bacillus megaterium QM RT B1551"; RL Plasmid 45:142-142(2001). XX RN [3] RP 1-5428 RX DOI; 10.1128/JB.00449-11. RX PUBMED; 21705586. RA Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., RA Koenig S.S., Creasy H.H., Rosovitz M.J., Riley D.R., Daugherty S., RA Martin M., Elbourne L.D., Paulsen I., Biedendieck R., Braun C., RA Grayburn S., Dhingra S., Lukyanchuk V., Ball B., Ul-Qamar R., Seibel J., RA Bremer E., Jahn D., Ravel J., Vary P.S.; RT "Genome sequences of the biotechnologically important Bacillus megaterium RT strains QM B1551 and DSM319"; RL J. Bacteriol. 193(16):4199-4213(2011). XX RN [4] RP 1-5428 RA Zhou Y., Edirisinghe J.N., Vary P.S.; RT ; RL Submitted (27-FEB-2006) to the INSDC. RL Biological Sciences, Northern Illinois University, Montgomery 306, DeKalb, RL IL 60115, USA XX RN [5] RP 1-5428 RA Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., RA Riley D.R., Huot-Creasy H., Koenig S.S.K., Galens K., Orvis J., Creasy T., RA Biedendieck R., Braun C., Grayburn S., Jahn D., Vary P.S., Ravel J.; RT ; RL Submitted (05-FEB-2010) to the INSDC. RL Institute for Genome Sciences, University of Maryland School of Medicine, RL 801 West Baltimore St, Baltimore, MD 21201, USA XX DR MD5; fd41f912abff981aa601f88ae19be9f7. DR BioSample; SAMN02603354. DR EuropePMC; PMC3147683; 21705586. DR EuropePMC; PMC3236047. XX CC On Apr 8, 2010 this sequence version replaced gi:91718798. CC Bacteria available from the Bacillus Genetic Stock Center, CC (http://www.bgsc.org/), The Ohio State University, 776 Biological CC Sciences Building, 484 West 12th Avenue, Columbus. Ohio 43210 under CC inventory No. 7A116 or from Patricia S. Vary (pvary@niu.edu), Dept. CC of Biological Sciences, Northern Illinois University, DeKalb, IL CC 60115. XX FH Key Location/Qualifiers FH FT source 1..5428 FT /organism="Bacillus megaterium QM B1551" FT /plasmid="pBM100" FT /strain="QM B1551" FT /mol_type="genomic DNA" FT /db_xref="taxon:545693" FT gene 8..190 FT /locus_tag="BMQ_pBM10001" FT CDS 8..190 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10001" FT /product="hypothetical protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10001" FT /db_xref="EnsemblGenomes-Tr:ABE57123" FT /db_xref="UniProtKB/TrEMBL:Q1PHU1" FT /protein_id="ABE57123.1" FT /translation="MPIMFQSESCVRFRTDILNIYIQLLTKTVCKLINVSSKIPILYPL FT LFSSIGHDIIKKNGD" FT gene 407..1192 FT /locus_tag="BMQ_pBM10002" FT CDS 407..1192 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10002" FT /product="replication protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10002" FT /db_xref="EnsemblGenomes-Tr:ADE72258" FT /db_xref="UniProtKB/TrEMBL:D5E383" FT /protein_id="ADE72258.1" FT /translation="MSLGEGWTIRKTQLQNKFSRRNVDAAWKELAIKQYAVGFSAYVDG FT KKDYFYAVSDIPISQANFELLVIEQINLLQSQGKNVMTLSVIQHSPLEITEKISDVQNV FT HQIQNKQISSDVRSVQHSVYNTERTPINKKETNEKLTNEKISSSPRDFIDDKLREKYNN FT VPFDEVKSEMLNDTVIVDTNKQYKSLLEYRLKHWKPKQTKRKRVVRNARKEMVPKWLQT FT NDENAVAEDLPVNNDFEAEKEKMKAELMQLDAELKAGNR" FT gene 1233..1742 FT /locus_tag="BMQ_pBM10003" FT CDS 1233..1742 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10003" FT /product="conserved hypothetical protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10003" FT /db_xref="EnsemblGenomes-Tr:ABE57125" FT /db_xref="InterPro:IPR025052" FT /db_xref="UniProtKB/TrEMBL:Q1PHT9" FT /protein_id="ABE57125.1" FT /translation="MKNVSENERAYWNHEVAEQLDIGTSTLRKWCLELEENEYVFSKGE FT QESRAFLKRDIDVLMNMKNEIRNKKKSLKDAAKIALEKARTGVVLVEQEQEQAPPVPVE FT QAQPMFTLEDMRNIVREELQEQAKARENERDKALMGVMRELQDVKKMIAASQEVSKKKW FT WEFWKT" FT gene complement(2398..2745) FT /locus_tag="BMQ_pBM10004" FT CDS complement(2398..2745) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10004" FT /product="helix-turn-helix domain protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10004" FT /db_xref="EnsemblGenomes-Tr:ABE57126" FT /db_xref="GOA:Q1PHT8" FT /db_xref="InterPro:IPR001387" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:Q1PHT8" FT /protein_id="ABE57126.1" FT /translation="MANLRNLGREMVKAKNPELHKSLFGSTASIFGQLILEKRMSKGIS FT QDDLALMANTTQKTISRVEGGNSNVTMDTYDKLFDALNISPEERGQAFLKKTERGNEVI FT VGANPIYSHSY" FT gene complement(2767..3309) FT /locus_tag="BMQ_pBM10005" FT CDS complement(2767..3309) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10005" FT /product="hypothetical protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10005" FT /db_xref="EnsemblGenomes-Tr:ADE72259" FT /db_xref="UniProtKB/TrEMBL:D5E384" FT /protein_id="ADE72259.1" FT /translation="MVNIVAEVISLPDLKGVDQMTDYMSMLFEDPAKDSLIKIGFITKA FT MDALATVPKAQLPPRGRDAEGNHFFVGFELTTDPIDGVEYTLRPKAIKALRAEPIYELR FT LSVERLNWHFRATFFPKYHPDTNQLFYCLVNPFEKEGKEGDNDDPTDENMQETYEVFKQ FT VRAHFDDYRKYFDDLYQ" FT gene complement(3985..4215) FT /locus_tag="BMQ_pBM10006" FT CDS complement(3985..4215) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10006" FT /product="helix-turn-helix domain protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10006" FT /db_xref="EnsemblGenomes-Tr:ADE72260" FT /db_xref="GOA:D5E385" FT /db_xref="InterPro:IPR001387" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D5E385" FT /protein_id="ADE72260.1" FT /translation="MQCHLKKYLEEQDISVRKLSEEINERRDTINDLANNRDMNNRRIP FT ASLLAKLMMYFDVTLDDLFTLIENNDKDKES" FT gene 4378..4752 FT /locus_tag="BMQ_pBM10007" FT CDS 4378..4752 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10007" FT /product="transcriptional regulator, LuxR family protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10007" FT /db_xref="EnsemblGenomes-Tr:ABE57129" FT /db_xref="GOA:Q1PHT5" FT /db_xref="InterPro:IPR000792" FT /db_xref="InterPro:IPR016032" FT /db_xref="InterPro:IPR036388" FT /db_xref="UniProtKB/TrEMBL:Q1PHT5" FT /protein_id="ABE57129.1" FT /translation="MEKAEKLLVGIENVLGMANELFDEVARLKQVEEECKILKEKLFLT FT QFTRSEKEVFELALDSLSSSKMAEWLFKERSTISQQRKDICKKLGVKNIKEAVQKFQNL FT HQEPQQEIHQESPQKLVNIS" FT gene 5019..5282 FT /locus_tag="BMQ_pBM10008" FT CDS 5019..5282 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BMQ_pBM10008" FT /product="conserved hypothetical protein" FT /db_xref="EnsemblGenomes-Gn:BMQ_pBM10008" FT /db_xref="EnsemblGenomes-Tr:ADE72261" FT /db_xref="GOA:D5E386" FT /db_xref="InterPro:IPR002145" FT /db_xref="UniProtKB/TrEMBL:D5E386" FT /protein_id="ADE72261.1" FT /translation="MDIIIRNIGKEYVKAIDEKAKALNMSRNEFLNRYLIGYAHHREAL FT GREDRLEKFLNETQQQMLAFTMLMDMMTDTLRELSGLDDDES" XX SQ Sequence 5428 BP; 1875 A; 873 C; 1018 G; 1662 T; 0 other; gatcattttg ccgattatgt ttcaatcaga aagttgtgtt cgatttcgga cagatatttt 60 gaatatttat attcaactgt taactaaaac tgtctgcaaa ttaatcaatg tctctagtaa 120 aattccgatt ttatacccac tcctattttc atcaatagga catgatataa taaaaaagaa 180 cggagattga ggcctccgtt ctcttggttg tacttgttgc aatagtacgt ttatttggtt 240 acgtatatta tagcaagtac tccaacaaaa aatcaatcgt tggaggaatt tagaaatgaa 300 tggaattatc aaaacaataa aaacaacgca atatgctcaa atacataacg cgccattaca 360 aacggacctg gaggacttgc ggtctatcgg tctattaagt catattatga gcttaggtga 420 aggttggacg attaggaaga cccagttaca aaacaaattt tctcgtagaa atgtagacgc 480 tgcttggaag gaattagcta ttaaacaata cgctgtcggt tttagcgcat atgttgacgg 540 aaaaaaagat tatttttacg ccgtatcaga tattccgatt tcgcaagcta atttcgaatt 600 gcttgtcatt gaacaaataa atctcttaca atcgcaaggt aaaaacgtca tgacgttaag 660 cgtgatacaa cattcgccac ttgaaatcac tgaaaaaata tctgatgtac aaaatgtaca 720 tcagatacaa aataagcaaa tttcttctga tgtacgttct gtacaacaca gtgtgtacaa 780 cacagaacgt acacctataa ataaaaaaga aacaaatgaa aaattaacaa atgaaaaaat 840 tagtagtagt ccacgtgatt ttattgatga taaattacga gaaaaatata ataatgtacc 900 tttcgacgaa gtgaaaagtg aaatgcttaa cgatactgta atcgttgata cgaataagca 960 atataaatca ctattagaat accgtcttaa acattggaaa ccgaagcaaa caaaaaggaa 1020 acgtgtagta cgtaatgcac gtaaagaaat ggttccaaag tggctacaaa caaatgatga 1080 aaatgcagta gcagaagatc ttccagtgaa taatgatttt gaagctgaaa aggaaaaaat 1140 gaaggcggag cttatgcaat tagatgcaga attaaaagca ggtaatcgtt aataaatatt 1200 gaattacacc tacaaaagcg agagcgaacg aggtgaagaa cgtgtcagaa aacgaacgcg 1260 catattggaa tcatgaagta gctgaacaac ttgacatagg tacaagcaca ttaagaaaat 1320 ggtgcttaga attggaagag aacgagtacg tgttctctaa aggcgaacaa gaaagccgag 1380 cttttttaaa acgtgatatt gatgttttaa tgaacatgaa aaatgaaata cgaaataaga 1440 aaaaatcact caaagatgcg gctaaaatcg cgttagaaaa ggcaagaacg ggggtcgttc 1500 tcgtagaaca agaacaggaa caagcacccc ccgttcccgt cgaacaagca cagccgatgt 1560 tcaccttgga ggacatgcgg aacattgtac gtgaagagct acaggaacaa gctaaagcac 1620 gtgagaacga acgagataaa gcactaatgg gtgtcatgcg tgaattacag gatgtaaaaa 1680 aaatgatagc tgcttctcaa gaggtaagta aaaaaaaatg gtgggagttt tggaaaacct 1740 aattttttta gaaatcttga gtgcaatata gtttaataca tcttgagcaa cttcaatgga 1800 gtattatcaa caacatgtaa taggttattt cataatacag agaagaagtt ttattaaaaa 1860 atgatacctt caaggtgtat ctttttttgt agcatggtat atagcatata atattttccc 1920 tttatgtctg ttatataggc aattacaaag ttttcttaaa gataaggtca agtgggatgc 1980 aattttcgag attgttattg atagatacta taaattacgt aagtaattat gtattatcaa 2040 agctgctttt tttctcctgt tttgtttgta tgatgaatgg gggagacggc ggcaaggatg 2100 aaggtataag aaaagccctc aagatttgtt gagggctttt cttacatgtt tggttgatta 2160 tagctactgt ggtaaagagc ttgctttttt caatgtattc ctgaacaagg ttgaacaaat 2220 agctttggga ataaataagt ggttggaaaa gttgtgggtt atttaaaaaa tagataaata 2280 acagggagac gagaaatgat cctttaaaaa cgatttatta aattcatctt ttcttaatgt 2340 ttgtaaggga gaataagtca aaaagacctg tagttgtgtg actacagatc ttgtctctta 2400 ataactgtgg gagtagattg gattcgctcc tacaattacc tcgttccccc gttcagtctt 2460 ttttaagaaa gcttgacccc tttcttctgg actgatatta agagcgtcaa acagcttgtc 2520 atacgtgtcc attgtcacgt tgctgttccc gccctctaca cgagagattg ttttttgtgt 2580 tgtattagcc attaaagcaa ggtcatcttg tgatatgcct ttgctcatac gcttctctag 2640 gattagttgc ccgaagatag aggctgtact gccaaataaa gatttgtgca actcaggatt 2700 tttagccttc accatttccc tacctaaatt ccgtaggttt gccatgaaaa atcatctcct 2760 tatagcttat tggtagaggt catcaaaata tttacggtaa tcatcgaaat gtgcccttac 2820 ttgtttaaac acctcgtacg tttcctgcat gttttcatct gttgggtcat cgttatctcc 2880 ttctttccct tctttttcga aaggattcac taaacaatag aaaagttggt tagtatcagg 2940 atgatattta gggaagaagg tagcacgaaa atgccaattt aatcgctcga cgcttaatcg 3000 taactcataa attggttctg cacgtaatgc cttaatagcc tttggacgta aagtgtactc 3060 tactccgtca attgggtctg ttgttaattc aaaccctacg aagaaatgat ttccctctgc 3120 gtctctacct ctaggtggta attgagcttt gggaacagtc gctagtgcat ccattgcttt 3180 agtgataaac ccgattttga ttaaggaatc tttggcgggg tcttcaaata acatagacat 3240 gtaatccgtc atctgatcta caccttttaa atcgggtaat gagataacct ctgctactat 3300 atttaccata catcatatca tataatacct aaattgtgaa aaaatttaag gcgtatatga 3360 cgtttccccc ctttgatgta aaattaacgc cttttacagc gatatataaa ttttaatata 3420 aaaaattaaa aaaaggggaa aaacttcctt tttaattaag tgagataaaa agattaaaat 3480 ggtgtttttt tatgcaggta tttcaagcgc gttattcaca gaaacgttgt taaatcaaca 3540 atgtataaaa agatgcataa tcaagaaaac tcttctttct gcgagccctt gcctcccaag 3600 gtttcttttt tgtggtgggt tccggaaaga gtgtttatgt aaactagctt tgtatatcgt 3660 atacataccc aaatgtttct tatctagtaa aagaatggtg atataattat aaatagatct 3720 acacagggag taagaatatg atgaatccaa aagaaaagca aagttccaaa tttagcgttg 3780 tgtttaagtc ctacgaacaa tttttgaaga agattttaaa tatgttcttt actagatgat 3840 atttcataca aaaaaggctt ttaagaaata taacacttaa aagctttttt tggtgcctat 3900 aagctgtttt atgttaacta gaaagaaata tataaacata tacatagcac tttttattga 3960 ttaaaaagct gagtacatta gttctcagct ttctttatct ttatcgttat tttcaattag 4020 cgtaaacaaa tcgtccaacg ttacatcaaa atacatcatc aatttagcta gtaaactggc 4080 tggtattcgt ctgttattca tatcacggtt gttcgccaaa tcgtttattg tatcgcgtct 4140 ttcattgatt tcttcagata atttccttac agaaatgtct tgctcttcta aatatttttt 4200 tagatgacat tgcaatttta cgttctccaa aattgacctc cttctcaaaa aaattcaata 4260 ttttattgac ctttcattat gtaagatgct atatttatgt taacaatttg acacgtttaa 4320 cgtgccgata actgaattgt ttattccatt tattttaaca tatgggagct gattcaaatg 4380 gaaaaagctg aaaaattgtt agtggggatc gaaaatgttt taggcatggc taatgaactt 4440 tttgacgagg tagcacgttt gaaacaagtc gaggaggagt gtaaaatcct aaaagaaaaa 4500 ttgtttttga cccaatttac acgctcggaa aaagaagtgt ttgaactcgc acttgacagt 4560 ctttcatctt caaaaatggc tgaatggcta ttcaaagaac ggagcacaat ttcacaacaa 4620 cgtaaggata tttgcaaaaa attaggcgtt aaaaatatca aagaagcagt acaaaaattt 4680 caaaaccttc accaagaacc gcaacaagaa atccaccaag aatcaccaca aaaactcgta 4740 aacatttcat aaaaaatgaa aaaagcgtat cgacagcagg tgcccacgag gggaatcagc 4800 cacctaaata gttgaaaata tggaatattt ttagggggtt gaagggacat tgcaaacgtt 4860 ttcagtgtac ccactggaaa aaatcgtggt atcacggtta agctaggctc tgcctagcct 4920 agcacagtat gtgatagcaa aaacccctta tgctctttcg aagaaataac ggattaattt 4980 ccagttacta ttttttttga aaaaaggagt tggttttttt ggatattatt attcgcaata 5040 tcggcaaaga atacgtcaaa gcaattgatg aaaaagcgaa ggcattgaac atgtctcgca 5100 atgaattttt gaacagatat ttaatcggat acgcacatca tcgggaagca cttgggaggg 5160 aagaccgact ggaaaagttt cttaatgaaa cacaacagca aatgttagct ttcacaatgc 5220 taatggatat gatgacagat actttacgag aattaagtgg attggacgat gatgaatcgt 5280 aatcatatga cggttttttt atttaagggt cttctgaaac acgaggcaat acagcaaacg 5340 tacgaaaatc gcctgtattt gatttttgat gtgtcggaag ataaataatt gccttatcat 5400 taaaaacgtc atataaggca atatggaa 5428 //