ID CP000696; SV 1; circular; genomic DNA; STD; PRO; 4909 BP.
XX
AC CP000696; AAOO01000000-AAOO01000076;
XX
PR Project:PRJNA15753;
XX
DT 12-MAY-2007 (Rel. 91, Created)
DT 15-MAY-2014 (Rel. 120, Last updated, Version 4)
XX
DE Acidiphilium cryptum JF-5 plasmid pACRY08, complete sequence.
XX
KW .
XX
OS Acidiphilium cryptum JF-5
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
OC Acetobacteraceae; Acidiphilium.
OG Plasmid pACRY08
XX
RN [1]
RP 1-4909
RG US DOE Joint Genome Institute
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.;
RT "Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5";
RL Unpublished.
XX
RN [2]
RP 1-4909
RG US DOE Joint Genome Institute
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.;
RT ;
RL Submitted (04-MAY-2007) to the INSDC.
RL US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA
RL 94598-1698, USA
XX
DR MD5; 593aa2bbd6101f2a7876ba6800e5aefe.
DR BioSample; SAMN02598339.
XX
CC URL -- http://www.jgi.doe.gov
CC JGI Project ID: 4000181
CC Source DNA and bacteria available from Timothy Magnuson
CC (magntimo@isu.edu)
CC Contacts: Timothy Magnuson (magntimo@isu.edu)
CC Paul Richardson (microbes@cuba.jgi-psf.org)
CC Quality assurance done by JGI-Stanford
CC Annotation done by JGI-ORNL and JGI-PGF
CC Finishing done by JGI-LANL
CC Finished microbial genomes have been curated to close all gaps with
CC greater than 98% coverage of at least two independent clones. Each
CC base pair has a minimum q (quality) value of 30 and the total error
CC rate is less than one per 50000.
CC The JGI and collaborators endorse the principles for the
CC distribution and use of large scale sequencing data adopted by the
CC larger genome sequencing community and urge users of this data to
CC follow them. It is our intention to publish the work of this
CC project in a timely fashion and we welcome collaborative
CC interaction on the project and analysis.
CC (http://www.genome.gov/page.cfm?pageID=10506376).
XX
FH Key Location/Qualifiers
FH
FT source 1..4909
FT /organism="Acidiphilium cryptum JF-5"
FT /plasmid="pACRY08"
FT /strain="JF-5"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:349163"
FT gene 1120..1605
FT /locus_tag="Acry_3633"
FT CDS 1120..1605
FT /codon_start=1
FT /transl_table=11
FT /locus_tag="Acry_3633"
FT /product="hypothetical protein"
FT /db_xref="EnsemblGenomes-Gn:Acry_3633"
FT /db_xref="EnsemblGenomes-Tr:ABQ29225"
FT /db_xref="UniProtKB/TrEMBL:A5FUE3"
FT /protein_id="ABQ29225.1"
FT /translation="MWGMLASMSKHSMASLRERRAALGLVQMNLWIREEDRAAFTAAVA
FT PFKQRAGELDPAQRPGRKRQEFARASSRPVARQKPPEAPQRPAERRSAPRPAIALPCRL
FT IFPTRPPARLRNAMKEDGWFYDKLTGTWTADEAEPVELWIDELVRDWGGRIIAPAGG"
FT gene 1770..2378
FT /locus_tag="Acry_3634"
FT CDS 1770..2378
FT /codon_start=1
FT /transl_table=11
FT /locus_tag="Acry_3634"
FT /product="hypothetical protein"
FT /db_xref="EnsemblGenomes-Gn:Acry_3634"
FT /db_xref="EnsemblGenomes-Tr:ABQ29226"
FT /db_xref="UniProtKB/TrEMBL:A5FUE4"
FT /protein_id="ABQ29226.1"
FT /translation="MRRCGAHSMDCAITLVAGRFSASRETMNEIDPKRQERNKRYRTGL
FT EERGIKAFQVVAPETAKGLFRRAAELMTRDNDPMEPRQAMRLVGGANEPELGDSAPALI
FT AELDEARKRIAEIERQAEARRAITAQAAERHRQMLEAERDAARAAEAAEREKVQAIAME
FT ALQAQERVGRAETVILQVKTLPGIKGRLVRWLAGDVLPD"
FT gene complement(2704..3048)
FT /pseudo
FT /locus_tag="Acry_3635"
FT gene complement(3385..3825)
FT /locus_tag="Acry_3636"
FT CDS complement(3385..3825)
FT /codon_start=1
FT /transl_table=11
FT /locus_tag="Acry_3636"
FT /product="protein of unknown function DUF29"
FT /note="PFAM: protein of unknown function DUF29"
FT /db_xref="EnsemblGenomes-Gn:Acry_3636"
FT /db_xref="EnsemblGenomes-Tr:ABQ29227"
FT /db_xref="InterPro:IPR002636"
FT /db_xref="UniProtKB/TrEMBL:A5FUE5"
FT /protein_id="ABQ29227.1"
FT /translation="MSTSTLYDRDFYAWANEQAGLLRAGKLTQADIEHIAEEIESMGKT
FT EKRELISRLAVLLTHLLKWQYQPVRRGASWEVTIRIQRRDLARHLRDNPSLQAKLDEAI
FT SDAYGDAILAAYGETAIPKQTFPTTCPWSFDQMMAEDFWPEA"
FT gene complement(3839..4234)
FT /locus_tag="Acry_3637"
FT CDS complement(3839..4234)
FT /codon_start=1
FT /transl_table=11
FT /locus_tag="Acry_3637"
FT /product="hypothetical protein"
FT /db_xref="EnsemblGenomes-Gn:Acry_3637"
FT /db_xref="EnsemblGenomes-Tr:ABQ29228"
FT /db_xref="GOA:A5FUE6"
FT /db_xref="InterPro:IPR007889"
FT /db_xref="UniProtKB/TrEMBL:A5FUE6"
FT /protein_id="ABQ29228.1"
FT /translation="MLSQRRAAQAWGISRATLQRAVSSGKISVLPDGTIDPAEMLRAFG
FT EAKGGPPGHHNEPLGPPLGRGDEMAFQAEIRVLKAQIEAKEALLSAKDRHIEDLSQALR
FT LLAGPPAPAPQPSLLARLFSRQKPPRS"
FT gene complement(4247..4822)
FT /locus_tag="Acry_3638"
FT CDS complement(4247..4822)
FT /codon_start=1
FT /transl_table=11
FT /locus_tag="Acry_3638"
FT /product="hypothetical protein"
FT /db_xref="EnsemblGenomes-Gn:Acry_3638"
FT /db_xref="EnsemblGenomes-Tr:ABQ29229"
FT /db_xref="InterPro:IPR036388"
FT /db_xref="InterPro:IPR036390"
FT /db_xref="UniProtKB/TrEMBL:A5FUE7"
FT /protein_id="ABQ29229.1"
FT /translation="MSKVPPKTVGLATAPSGTWVQTERAAHERWAKLIGSHPKAAALMH
FT VIVGNMGRHNALVASVPNLQRMMGCSRNTALRAINVLKEQNWIEVRQLGGVGTTNAYIV
FT NDRVAWTGSRDGIRYSLFSAAVLVSDDEQPDKAEIGAQPPLERVPALYPGDRQLPTGNG
FT LDPPTQPPLVGLEPDLPAQVKEPHGPHD"
XX
SQ Sequence 4909 BP; 1013 A; 1378 C; 1503 G; 1015 T; 0 other;
tgacaaaaaa cgtccaaacc cgtcccatca gctatgggac taccccgtcc catcagctat 60
gggactaccc ccccctataa aatattgatt taattcatta tttttttcac tccttctatg 120
atctagagga gcacccccga agggggctgc ctgccgtgca ggtagtccac ggggatgcgt 180
agcggagcgc cccgatagga ggctggcgac gcgcagccat tccggtgggc ccacctgtgc 240
ggactggctg atcaggcggc cctcggggcc gatgattgaa ggagcggaaa gccgctgacg 300
cggcttaatc atgaacggcg gccctgaagg gccgcgcggg accagggcga gggaccggcg 360
cgggcgcgct gcgccctccg ggtctcccgc gctgcgctcg acccgcgcca cgaggtgaga 420
gacggcgacg cgggaagcaa aggcggcatt gggggcgatg cggcgaggat ggccgtaaaa 480
tcccgtcaga cgggcgtaca caggtttttg gggttttctg ctcccctttc agcgtccgat 540
ccgcaaggcc gctctacggc ctcctgaggg gctggaatgg gcattccgga ttagtagccg 600
cgtgggatga ccagcctgat atgccccttg gtggttaccc aaccgccgtg ctggtcactg 660
ctggcctcga agcagagatg accgccgcag gtctgccact tcacccgcgc acccttggcc 720
ttgagtgcct tgaggttggc ccgttcggtc tggatctcgg cccgcagggc ctctgcacgt 780
caatagaaca cagcacaacc acagcagagt cacaccataa agtccgccat aatcacggca 840
gatacgatgc aaaaacacaa catgtccgct gcatatctgc gccagaaacc ccgccaaacc 900
cccgccacta tgcgggcgga aagttcagga gagaagtcac agaccattgc acctttggag 960
cctccggaca tgaaagcgca ttgacccgcc ccggtgcggt cctcgcggcc cggaatggca 1020
gcaatcctga gcgcgtctgt ccctctgccc tgaccttcgc tggggcaccg aactgcaccc 1080
cttggggtgc aatcgcggca ctagtgtcgt tgtcggaaaa tgtggggtat gctcgcgagc 1140
atgagcaagc actcgatggc ctcgttacgg gagcgccggg cggcgcttgg cctggttcag 1200
atgaatctct ggatcaggga agaggaccgc gcggcgttca ccgcggcggt tgcgccgttc 1260
aagcagcggg ccggggagct ggacccggcg cagcggcccg gcaggaaacg ccaggagttc 1320
gccagagcgt cgtcccggcc ggtggcacgg cagaagccgc cagaggctcc ccagaggccc 1380
gcagaaaggc gatcggcacc cagaccggcg attgccctgc cctgtcggct gatcttcccc 1440
accaggccgc ccgcccgcct ccgcaatgcg atgaaggagg atgggtggtt ctacgacaaa 1500
ctcaccggca cctggaccgc tgatgaggct gaaccggtcg aactctggat cgatgaattg 1560
gttcgcgatt ggggcggtcg gatcatcgca ccggcaggcg gataatttcc ccggcatcct 1620
cgtggcaaga actagtgctt aattaccaaa gggcgcactt acgagttgct gcgcaactca 1680
gtgtgctgga ggtacagaca aggcagggcg gttaatccgg gcaagcggct ttcgccgcag 1740
aaagcgcgtg agacggccat tagcgtcttg tgagacggtg tggtgcgcac tctatggatt 1800
gtgccataac tctggttgcg gggcggttca gtgcgtcgcg tgagacgatg aacgagatcg 1860
atccaaaacg ccaggagcgg aacaagcggt atcgtacggg gcttgaggag cgcggtatca 1920
aggcgtttca ggtggtggcc ccagagacgg ctaaggggct gtttcggcga gcagcggaac 1980
tgatgacccg cgacaatgac ccaatggagc cacgtcaagc catgcgtctg gttggcgggg 2040
caaatgagcc ggaattgggt gatagtgcac cagcattgat cgctgagctg gacgaggcac 2100
ggaagcggat tgctgagatc gagcgtcagg cggaggcgag aagggctatc acggcgcagg 2160
ctgccgaacg gcataggcag atgttggagg ccgagcggga tgcagcgagg gcagcagagg 2220
ccgcagagcg tgagaaggta caggcgatcg ccatggaggc tctgcaagcc caagagcgag 2280
taggtcgagc cgaaactgtc atcctgcagg ttaagacctt gccgggaatc aagggccgtc 2340
tggtgcgctg gctggcagga gacgtactgc cggattagct gtccggaatc gaccgtattc 2400
ggacaggtaa ttttaccatg cccataaatt aggcttctag agttatggac aatcaaatac 2460
tattgaacat ggttttaatc tcgggattct ggacggttca atcatcggtg tgagccgaac 2520
ctgagttacg gcctcgacga cgaaacgaaa agatatttga tcagagcggc gattatcaaa 2580
acaatcaacg tcatgatggc aataccgaac agcgccatac ctcccatcat ccagccgccc 2640
atcataccat gcatcatcgg gttgctccgt gtttcagtca gccttgccca tcatcccgcg 2700
catcattgcc ggcatcccat ccttcgcaaa gcgatcgagc tcccgtgcat gggcatagat 2760
cacctttacc atttccggat cgtccgaagt ttcggtgacc tgaatcccgg taggtaagag 2820
tttataagat cgtttatact tcgtgctgtt ggcaaacatg gccggtacac tgttgctcat 2880
cgggtaggga aatggtcgat tctcagcgag gcgattatac atttcgatca cgtgcgcctg 2940
gatgaggtga gcggttgttg gattactcga aacagtggtg tcaattatgc cgttgggcat 3000
gtagtccgta gcgcgcgtga tctccgtatg tcgctcgaat agtttcatgc cgagcttcat 3060
cggccccatc atgttgctgc gggacatcat gccctgcatg tccatgtggg acatatttga 3120
tcccatcatt ccgcccatca ttccgccaga tgaacccgta gtatctgcgg actgtgcagc 3180
ggcgcatcgt ggtccaagac cgagaagggc gagaaagccg gaaaatgtgc tgccaaggat 3240
agcggagagg gtacgacgct tcatgaggtt tcacatctct cgattgattg ggatggcaaa 3300
acaagtctaa accttaccat catggcagtg taaagaaagc gtcagaatct cgaattatgg 3360
aaaacgtgga cactacgcgt ccttttaggc ttccggccag aagtcttcgg ccatcatttg 3420
gtcgaaggac caggggcagg tggtggggaa ggtttgctta ggtatagccg tttcaccgta 3480
tgccgcgagg attgcatcgc cataggcatc gctgatggct tcgtcgagct tggcttggag 3540
gcttgggttg tcacgtagat gacgggcaag atcacggcgc tgaatgcgga tagtcacttc 3600
ccatgacgct ccacggcgga caggctgata ttgccatttc aagagatgcg tgaggagtac 3660
tgcgaggcgg ctgatcagtt cccgcttctc ggtcttgccc atgctctcga tctcctcggc 3720
gatgtgttca atgtcggcct gcgtcagctt cccagcgcgc agaagtccgg cctgttcatt 3780
cgcccaggcg tagaaatcgc ggtcatagag ggtcgatgtg ctcatggtat taattctatc 3840
acgaacgggg cggcttctgg cgggaaaata gcctggccag cagagacggc tgtggtgccg 3900
gcgctggcgg gccagcgagc agccggagcg cctggctcaa atcctcgatg tgccgatcct 3960
tcgcggagag cagagcctcc ttggcttcga tctgcgcttt gagcacccgg atttcggcct 4020
gaaaagccat ctcatccccc cggcccaggg gtggcccaag tggctcattg tggtggcccg 4080
gtgggccacc cttggcttcg ccaaaggcgc gaagcatctc tgccggatca atcgttccat 4140
ccggcaaaac actaattttt ccgctggata cggcccgctg tagggtggct ctggatatcc 4200
cccaggcttg ggcggctcgc ctctggctca gcatggccca agtggctcaa tcatgtggcc 4260
catgtggctc tttcacttgg gccggtaggt ctggctctaa cccgaccagc ggaggctgcg 4320
tcggcggatc gaggccgttt ccagtcggca attggcggtc tcccggatac aaagcaggaa 4380
cccgctctag gggcggctgt gcaccaattt cggccttgtc tggctgttcg tcgtcggaaa 4440
ccagtaccgc cgcactgaac aggctgtagc gtatgccatc gcggctccca gtccatgcca 4500
cgcgatcatt cacgatgtag gcgtttgttg ttccgacacc gcctagctga cggacctcaa 4560
tccaattttg ttccttcagc acgttgatcg cacggagagc ggtattccga gagcaaccca 4620
tcatccgctg aaggttaggg acgctggcta ccaaggcatt gtgacgtccc atgttgccta 4680
cgatgacgtg catgagtgcc gcagccttgg ggtgggagcc gatgagtttt gcccatcgct 4740
catgtgctgc cctttcggtt tgcacccatg ttccgctcgg cgctgtagcg agaccgacgg 4800
tttttggggg aactttcgac atgggactac cccgtctcac tcatgaacaa tgattgtcag 4860
tacgtagaca atcaatgtct attttagcgg acatttaatg tcaatgaac 4909
//