Dbfetch
ID AF033819; SV 3; linear; genomic RNA; STD; VRL; 9181 BP. XX AC AF033819; XX DT 23-JAN-1998 (Rel. 54, Created) DT 23-SEP-2018 (Rel. 138, Last updated, Version 9) XX DE HIV-1, complete genome. XX KW . XX OS Human immunodeficiency virus 1 OC Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. XX RN [1] RP 1-9181 RA Petropoulos C.J.; RT "Appendix 2: Retroviral taxonomy, protein structure, sequences, and genetic RT maps"; RL (in) Coffin J.M. (Eds.); RL RETROVIRUSES; RL Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, NY, USA RL (1997) XX RN [2] RP 1-9181 RA Chappey C.; RT ; RL Submitted (12-NOV-1997) to the INSDC. RL NIH, NLM, Rockville Pike, Bethesda, MD 20894, USA XX RN [3] RC Sequence update by submitter RP 1-9181 RA Chappey C.; RT ; RL Submitted (15-MAR-1999) to the INSDC. RL NIH, NLM, Rockville Pike, Bethesda, MD 20894, USA XX DR MD5; bbf2c9acba90e37c651795a0ed32ace4. DR EuropePMC; PMC102072; 10982320. DR EuropePMC; PMC115041; 11483742. DR EuropePMC; PMC1352377; 16401352. DR EuropePMC; PMC135834; 12409472. DR EuropePMC; PMC136364; 12097574. DR EuropePMC; PMC1642619; 16971429. DR EuropePMC; PMC165338; 12843019. DR EuropePMC; PMC1866041; 17251288. DR EuropePMC; PMC2043256; 17646410. DR EuropePMC; PMC2386800; 18433472. DR EuropePMC; PMC2612349; 18987151. DR EuropePMC; PMC2659435; 19343218. DR EuropePMC; PMC2737215; 19771221. DR EuropePMC; PMC2769074; 11897790. DR EuropePMC; PMC3094990; 21430056. DR EuropePMC; PMC3285652; 22384022. DR EuropePMC; PMC3346622; 22290950. DR EuropePMC; PMC3372140; 22403424. DR EuropePMC; PMC3486483; 22933284. DR EuropePMC; PMC3750384; 23914950. DR EuropePMC; PMC3767832; 24040404. DR EuropePMC; PMC3791109; 23865750. DR EuropePMC; PMC4128663; 25110880. DR EuropePMC; PMC4134778; 24859335. DR EuropePMC; PMC4368187; 25793890. DR EuropePMC; PMC4439053; 25993381. DR EuropePMC; PMC4640541; 26555444. DR EuropePMC; PMC4669199; 26343537. DR EuropePMC; PMC4840495; 27168813. DR EuropePMC; PMC5020253; 27630839. DR EuropePMC; PMC5069997; 27756204. DR EuropePMC; PMC5124254; 27920885. DR EuropePMC; PMC5155393; 27964762. DR EuropePMC; PMC523241; 15479817. DR EuropePMC; PMC525068; 15507649. DR EuropePMC; PMC5359922; 28331526. DR EuropePMC; PMC6129269; 30423069. DR EuropePMC; PMC6256933; 20335932. DR RFAM; RF00036; RRE. DR RFAM; RF00175; HIV-1_DIS. DR RFAM; RF00250; mir-TAR. DR RFAM; RF00375; HIV_PBS. DR RFAM; RF00376; HIV_GSL3. DR RFAM; RF00480; HIV_FE. DR RFAM; RF01380; HIV-1_SD. DR RFAM; RF01381; HIV-1_SL3. DR RFAM; RF01382; HIV-1_SL4. DR RFAM; RF01418; HIV_POL-1_SL. XX CC On Apr 2, 1999 this sequence version replaced AF033819.2. XX FH Key Location/Qualifiers FH FT source 1..9181 FT /organism="Human immunodeficiency virus 1" FT /mol_type="genomic RNA" FT /note="strain for reference annotation" FT /db_xref="taxon:11676" FT misc_feature 1..96 FT /note="repeat; positions of RNA transcription FT initialization and polyadenylation; Region: R" FT regulatory 73..78 FT /regulatory_class="polyA_signal_sequence" FT 5'UTR 97..181 FT primer_bind 182..199 FT gene 336..1838 FT /gene="gag" FT CDS 336..1838 FT /codon_start=1 FT /gene="gag" FT /product="Gag" FT /note="Pr55" FT /db_xref="GOA:A0A288CG13" FT /db_xref="InterPro:IPR000071" FT /db_xref="InterPro:IPR000721" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR008916" FT /db_xref="InterPro:IPR008919" FT /db_xref="InterPro:IPR010999" FT /db_xref="InterPro:IPR012344" FT /db_xref="InterPro:IPR014817" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:A0A288CG13" FT /protein_id="AAC82593.1" FT /translation="MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFA FT VNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKI FT EEEQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKA FT FSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGP FT IAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTS FT ILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPA FT ATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEG FT HTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAP FT PEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ" FT mat_peptide 339..731 FT /gene="gag" FT /product="matrix" FT mat_peptide 732..1424 FT /gene="gag" FT /product="capsid" FT mat_peptide 1425..1466 FT /gene="gag" FT /product="p2" FT mat_peptide 1467..1631 FT /gene="gag" FT /product="nucleocapsid" FT gene <1631..4642 FT /gene="pol" FT CDS <1631..4642 FT /codon_start=1 FT /gene="pol" FT /product="Pol" FT /note="Pr160" FT /db_xref="GOA:P04585" FT /db_xref="InterPro:IPR000071" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000721" FT /db_xref="InterPro:IPR001037" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR003308" FT /db_xref="InterPro:IPR008916" FT /db_xref="InterPro:IPR008919" FT /db_xref="InterPro:IPR010659" FT /db_xref="InterPro:IPR010661" FT /db_xref="InterPro:IPR010999" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR012344" FT /db_xref="InterPro:IPR017856" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR034170" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR036862" FT /db_xref="InterPro:IPR036875" FT /db_xref="PDB:1A30" FT /db_xref="PDB:1BV7" FT /db_xref="PDB:1BV9" FT /db_xref="PDB:1BVE" FT /db_xref="PDB:1BVG" FT /db_xref="PDB:1BWA" FT /db_xref="PDB:1BWB" FT /db_xref="PDB:1C0T" FT /db_xref="PDB:1C0U" FT /db_xref="PDB:1C1B" FT /db_xref="PDB:1C1C" FT /db_xref="PDB:1DMP" FT /db_xref="PDB:1DTQ" FT /db_xref="PDB:1DTT" FT /db_xref="PDB:1E6J" FT /db_xref="PDB:1EP4" FT /db_xref="PDB:1ESK" FT /db_xref="PDB:1EX4" FT /db_xref="PDB:1EXQ" FT /db_xref="PDB:1FB7" FT /db_xref="PDB:1FK9" FT /db_xref="PDB:1FKO" FT /db_xref="PDB:1FKP" FT /db_xref="PDB:1G6L" FT /db_xref="PDB:1HIV" FT /db_xref="PDB:1HVH" FT /db_xref="PDB:1HVR" FT /db_xref="PDB:1HWR" FT /db_xref="PDB:1HXB" FT /db_xref="PDB:1JKH" FT /db_xref="PDB:1JLA" FT /db_xref="PDB:1JLB" FT /db_xref="PDB:1JLC" FT /db_xref="PDB:1JLE" FT /db_xref="PDB:1JLF" FT /db_xref="PDB:1JLG" FT /db_xref="PDB:1JLQ" FT /db_xref="PDB:1KLM" FT /db_xref="PDB:1LV1" FT /db_xref="PDB:1LW0" FT /db_xref="PDB:1LW2" FT /db_xref="PDB:1LWC" FT /db_xref="PDB:1LWE" FT /db_xref="PDB:1LWF" FT /db_xref="PDB:1NCP" FT /db_xref="PDB:1O1W" FT /db_xref="PDB:1ODW" FT /db_xref="PDB:1ODY" FT /db_xref="PDB:1QBR" FT /db_xref="PDB:1QBS" FT /db_xref="PDB:1QBT" FT /db_xref="PDB:1QBU" FT /db_xref="PDB:1REV" FT /db_xref="PDB:1RT1" FT /db_xref="PDB:1RT2" FT /db_xref="PDB:1RT3" FT /db_xref="PDB:1RT4" FT /db_xref="PDB:1RT5" FT /db_xref="PDB:1RT6" FT /db_xref="PDB:1RT7" FT /db_xref="PDB:1RTD" FT /db_xref="PDB:1RTH" FT /db_xref="PDB:1RTI" FT /db_xref="PDB:1RTJ" FT /db_xref="PDB:1S1T" FT /db_xref="PDB:1S1U" FT /db_xref="PDB:1S1V" FT /db_xref="PDB:1S1W" FT /db_xref="PDB:1S1X" FT /db_xref="PDB:1T05" FT /db_xref="PDB:1TAM" FT /db_xref="PDB:1TKT" FT /db_xref="PDB:1TKX" FT /db_xref="PDB:1TKZ" FT /db_xref="PDB:1TL1" FT /db_xref="PDB:1TL3" FT /db_xref="PDB:1VRT" FT /db_xref="PDB:1VRU" FT /db_xref="PDB:2HND" FT /db_xref="PDB:2HNY" FT /db_xref="PDB:2HNZ" FT /db_xref="PDB:2KOD" FT /db_xref="PDB:2NPH" FT /db_xref="PDB:2OPP" FT /db_xref="PDB:2OPQ" FT /db_xref="PDB:2OPR" FT /db_xref="PDB:2OPS" FT /db_xref="PDB:2RF2" FT /db_xref="PDB:2RKI" FT /db_xref="PDB:2WHH" FT /db_xref="PDB:2WOM" FT /db_xref="PDB:2WON" FT /db_xref="PDB:2YNF" FT /db_xref="PDB:2YNG" FT /db_xref="PDB:2YNH" FT /db_xref="PDB:2YNI" FT /db_xref="PDB:3AO2" FT /db_xref="PDB:3C6T" FT /db_xref="PDB:3C6U" FT /db_xref="PDB:3DI6" FT /db_xref="PDB:3DLE" FT /db_xref="PDB:3DLG" FT /db_xref="PDB:3DM2" FT /db_xref="PDB:3DMJ" FT /db_xref="PDB:3DOK" FT /db_xref="PDB:3DOL" FT /db_xref="PDB:3DOX" FT /db_xref="PDB:3DRP" FT /db_xref="PDB:3DRR" FT /db_xref="PDB:3DRS" FT /db_xref="PDB:3DYA" FT /db_xref="PDB:3E01" FT /db_xref="PDB:3FFI" FT /db_xref="PDB:3I0R" FT /db_xref="PDB:3I0S" FT /db_xref="PDB:3KJV" FT /db_xref="PDB:3KK1" FT /db_xref="PDB:3KK2" FT /db_xref="PDB:3KK3" FT /db_xref="PDB:3KT2" FT /db_xref="PDB:3KT5" FT /db_xref="PDB:3LAK" FT /db_xref="PDB:3LAL" FT /db_xref="PDB:3LAM" FT /db_xref="PDB:3LAN" FT /db_xref="PDB:3LP0" FT /db_xref="PDB:3LP1" FT /db_xref="PDB:3LP2" FT /db_xref="PDB:3M8P" FT /db_xref="PDB:3M8Q" FT /db_xref="PDB:3MEC" FT /db_xref="PDB:3MED" FT /db_xref="PDB:3MEE" FT /db_xref="PDB:3MEG" FT /db_xref="PDB:3N3I" FT /db_xref="PDB:3NBP" FT /db_xref="PDB:3PHV" FT /db_xref="PDB:3QIN" FT /db_xref="PDB:3QIO" FT /db_xref="PDB:3QIP" FT /db_xref="PDB:3T19" FT /db_xref="PDB:3T1A" FT /db_xref="PDB:3TAM" FT /db_xref="PDB:4B3O" FT /db_xref="PDB:4B3P" FT /db_xref="PDB:4B3Q" FT /db_xref="PDB:4I7F" FT /db_xref="PDB:4KSE" FT /db_xref="PDB:4KV8" FT /db_xref="PDB:4NCG" FT /db_xref="PDB:4Q1W" FT /db_xref="PDB:4Q1X" FT /db_xref="PDB:4Q1Y" FT /db_xref="PDB:4Q5M" FT /db_xref="PDB:4QLH" FT /db_xref="PDB:4U1H" FT /db_xref="PDB:4U1I" FT /db_xref="PDB:4U1J" FT /db_xref="PDB:4U7Q" FT /db_xref="PDB:4U7V" FT /db_xref="PDB:5DGU" FT /db_xref="PDB:5DGW" FT /db_xref="PDB:5EU7" FT /db_xref="PDB:5HRN" FT /db_xref="PDB:5HRP" FT /db_xref="PDB:5HRR" FT /db_xref="PDB:5HRS" FT /db_xref="PDB:5IM7" FT /db_xref="PDB:5J2M" FT /db_xref="PDB:5J2N" FT /db_xref="PDB:5J2P" FT /db_xref="PDB:5J2Q" FT /db_xref="PDB:5K14" FT /db_xref="PDB:5KAO" FT /db_xref="PDB:5T82" FT /db_xref="PDB:5TC2" FT /db_xref="PDB:5VZ6" FT /db_xref="PDB:5XOS" FT /db_xref="PDB:5XOT" FT /db_xref="PDB:5YRS" FT /db_xref="PDB:6BJ2" FT /db_xref="PDB:6BJ3" FT /db_xref="PDB:6BSG" FT /db_xref="PDB:6BSH" FT /db_xref="PDB:6BSI" FT /db_xref="PDB:6BSJ" FT /db_xref="PDB:6DIF" FT /db_xref="PDB:6DIL" FT /db_xref="PDB:6DJ1" FT /db_xref="PDB:6DJ2" FT /db_xref="PDB:6DJ5" FT /db_xref="PDB:6DJ7" FT /db_xref="PDB:6DV0" FT /db_xref="PDB:6DV4" FT /db_xref="PDB:6E7J" FT /db_xref="PDB:6E9A" FT /db_xref="PDB:6EWA" FT /db_xref="PDB:6EX9" FT /db_xref="PDB:6GL1" FT /db_xref="UniProtKB/Swiss-Prot:P04585" FT /protein_id="AAC82598.2" FT /translation="FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAG FT ADRQGTVSFNFPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIG FT GIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETV FT PVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKD FT STKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRK FT YTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMD FT DLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPI FT VLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELEL FT AENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHT FT NDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPP FT LVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQ FT AIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAH FT KGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVA FT SCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQET FT AYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNK FT ELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQK FT QITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQ FT MAGDDCVASRQDED" FT mat_peptide 1680..1835 FT /gene="gag" FT /product="p6" FT mat_peptide 1799..2095 FT /gene="pol" FT /product="protease" FT mat_peptide 2096..4174 FT /gene="pol" FT /product="reverse transcriptase" FT mat_peptide 4175..4639 FT /gene="pol" FT /product="integrase" FT gene 4587..5165 FT /gene="vif" FT CDS 4587..5165 FT /codon_start=1 FT /gene="vif" FT /product="Vif" FT /note="p23" FT /db_xref="GOA:A0A288CG30" FT /db_xref="InterPro:IPR000475" FT /db_xref="UniProtKB/TrEMBL:A0A288CG30" FT /protein_id="AAC82594.1" FT /translation="MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYE FT SPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELAD FT QLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPL FT PSVTKLTEDRWNKPQKTKGHRGSHTMNGH" FT gene 5105..5341 FT /gene="vpr" FT CDS 5105..5341 FT /codon_start=1 FT /gene="vpr" FT /product="Vpr" FT /note="p15" FT /db_xref="GOA:A0A288CFT1" FT /db_xref="InterPro:IPR000012" FT /db_xref="UniProtKB/TrEMBL:A0A288CFT1" FT /protein_id="AAC82595.1" FT /translation="MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQH FT IYETYGDTWAGVEAIIRILQQLLFIHFQNWVST" FT gene 5377..7970 FT /gene="tat" FT CDS join(5377..5591,7925..7970) FT /codon_start=1 FT /gene="tat" FT /product="Tat" FT /note="p14" FT /db_xref="GOA:P04608" FT /db_xref="InterPro:IPR001831" FT /db_xref="InterPro:IPR036963" FT /db_xref="PDB:3MI9" FT /db_xref="PDB:3MIA" FT /db_xref="PDB:4OR5" FT /db_xref="PDB:5V61" FT /db_xref="PDB:6CYT" FT /db_xref="PDB:6MCE" FT /db_xref="PDB:6MCF" FT /db_xref="UniProtKB/Swiss-Prot:P04608" FT /protein_id="AAC82591.1" FT /translation="MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGI FT SYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE" FT gene 5516..8199 FT /gene="rev" FT CDS join(5516..5591,7925..8199) FT /codon_start=1 FT /gene="rev" FT /product="Rev" FT /note="p19" FT /db_xref="GOA:Q77YF8" FT /db_xref="InterPro:IPR000625" FT /db_xref="UniProtKB/TrEMBL:Q77YF8" FT /protein_id="AAC82592.1" FT /translation="MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRW FT RERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILV FT ESPTVLESGTKE" FT gene 5608..5856 FT /gene="vpu" FT CDS 5608..5856 FT /codon_start=1 FT /gene="vpu" FT /product="Vpu" FT /note="p16; 5608" FT /db_xref="GOA:Q9WB91" FT /db_xref="InterPro:IPR008187" FT /db_xref="InterPro:IPR009032" FT /db_xref="UniProtKB/TrEMBL:Q9WB91" FT /protein_id="AAD20388.1" FT /translation="MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDR FT LIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL" FT gene 5771..8341 FT /gene="env" FT CDS 5771..8341 FT /codon_start=1 FT /gene="env" FT /product="Env" FT /note="gp160; envelope glycoprotein" FT /db_xref="GOA:P04578" FT /db_xref="InterPro:IPR000328" FT /db_xref="InterPro:IPR000777" FT /db_xref="InterPro:IPR036377" FT /db_xref="InterPro:IPR037527" FT /db_xref="PDB:1AIK" FT /db_xref="PDB:1DF4" FT /db_xref="PDB:1DF5" FT /db_xref="PDB:1DLB" FT /db_xref="PDB:1FAV" FT /db_xref="PDB:1G9M" FT /db_xref="PDB:1GC1" FT /db_xref="PDB:1GZL" FT /db_xref="PDB:1K33" FT /db_xref="PDB:1K34" FT /db_xref="PDB:1MZI" FT /db_xref="PDB:1OPN" FT /db_xref="PDB:1OPT" FT /db_xref="PDB:1OPW" FT /db_xref="PDB:1RZJ" FT /db_xref="PDB:2CMR" FT /db_xref="PDB:2ME1" FT /db_xref="PDB:2MG1" FT /db_xref="PDB:2MG2" FT /db_xref="PDB:2MG3" FT /db_xref="PDB:2NY7" FT /db_xref="PDB:2PV6" FT /db_xref="PDB:2XRA" FT /db_xref="PDB:3D0V" FT /db_xref="PDB:3DNL" FT /db_xref="PDB:3DNN" FT /db_xref="PDB:3DNO" FT /db_xref="PDB:3DRO" FT /db_xref="PDB:3IDX" FT /db_xref="PDB:3IDY" FT /db_xref="PDB:3J70" FT /db_xref="PDB:3MNZ" FT /db_xref="PDB:3TYG" FT /db_xref="PDB:3VIE" FT /db_xref="PDB:4JPJ" FT /db_xref="PDB:4JPK" FT /db_xref="PDB:4YDV" FT /db_xref="PDB:4ZTO" FT /db_xref="PDB:5BN0" FT /db_xref="PDB:5C0R" FT /db_xref="PDB:5C0S" FT /db_xref="PDB:5CIL" FT /db_xref="PDB:5CIN" FT /db_xref="PDB:5CMU" FT /db_xref="PDB:5CMZ" FT /db_xref="PDB:5CN0" FT /db_xref="PDB:5DD0" FT /db_xref="PDB:5GHW" FT /db_xref="PDB:5H0N" FT /db_xref="PDB:5HFL" FT /db_xref="PDB:5HM1" FT /db_xref="PDB:5IVX" FT /db_xref="PDB:5KA5" FT /db_xref="PDB:5KA6" FT /db_xref="PDB:5NVP" FT /db_xref="PDB:5NWU" FT /db_xref="PDB:5NWW" FT /db_xref="PDB:5TKJ" FT /db_xref="PDB:5TKK" FT /db_xref="PDB:5WDF" FT /db_xref="PDB:5X08" FT /db_xref="PDB:5YB2" FT /db_xref="PDB:5YB3" FT /db_xref="PDB:5YB4" FT /db_xref="PDB:5YC0" FT /db_xref="PDB:5Z0W" FT /db_xref="PDB:5ZCX" FT /db_xref="PDB:6B9K" FT /db_xref="PDB:6BXP" FT /db_xref="PDB:6BXQ" FT /db_xref="PDB:6DE7" FT /db_xref="PDB:6DLN" FT /db_xref="UniProtKB/Swiss-Prot:P04578" FT /protein_id="AAC82596.1" FT /translation="MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVW FT KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQM FT HEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNIST FT SIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAG FT FAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNA FT KTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNN FT TLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNST FT WSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDG FT GNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGA FT LFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQL FT QARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREI FT NNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVG FT LRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSL FT ALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAV FT SLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL" FT sig_peptide 5771..5860 FT /gene="env" FT mat_peptide 5861..7303 FT /gene="env" FT /product="surface" FT mat_peptide 7304..8338 FT /gene="env" FT /product="transmembrane envelope" FT gene 8343..8714 FT /gene="nef" FT CDS 8343..8714 FT /codon_start=1 FT /gene="nef" FT /product="Nef" FT /note="p27" FT /db_xref="GOA:P04601" FT /db_xref="InterPro:IPR001558" FT /db_xref="InterPro:IPR027480" FT /db_xref="InterPro:IPR027481" FT /db_xref="PDB:3RL2" FT /db_xref="PDB:4NEE" FT /db_xref="PDB:4WU5" FT /db_xref="PDB:4WU7" FT /db_xref="PDB:5HGA" FT /db_xref="PDB:5HGB" FT /db_xref="PDB:5HGD" FT /db_xref="PDB:5HGH" FT /db_xref="UniProtKB/Swiss-Prot:P04601" FT /protein_id="AAC82597.1" FT /translation="MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITS FT SNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQ FT RRQDILDLWIYHTQGYFPD" FT 3'UTR 8631..9085 FT misc_feature 9086..9181 FT /note="repeat; positions of RNA transcription FT initialization and polyadenylation; Region: R" XX SQ Sequence 9181 BP; 3272 A; 1642 C; 2225 G; 2042 T; 0 other; ggtctctctg gttagaccag atctgagcct gggagctctc tggctaacta gggaacccac 60 tgcttaagcc tcaataaagc ttgccttgag tgcttcaagt agtgtgtgcc cgtctgttgt 120 gtgactctgg taactagaga tccctcagac ccttttagtc agtgtggaaa atctctagca 180 gtggcgcccg aacagggacc tgaaagcgaa agggaaacca gaggagctct ctcgacgcag 240 gactcggctt gctgaagcgc gcacggcaag aggcgagggg cggcgactgg tgagtacgcc 300 aaaaattttg actagcggag gctagaagga gagagatggg tgcgagagcg tcagtattaa 360 gcgggggaga attagatcga tgggaaaaaa ttcggttaag gccaggggga aagaaaaaat 420 ataaattaaa acatatagta tgggcaagca gggagctaga acgattcgca gttaatcctg 480 gcctgttaga aacatcagaa ggctgtagac aaatactggg acagctacaa ccatcccttc 540 agacaggatc agaagaactt agatcattat ataatacagt agcaaccctc tattgtgtgc 600 atcaaaggat agagataaaa gacaccaagg aagctttaga caagatagag gaagagcaaa 660 acaaaagtaa gaaaaaagca cagcaagcag cagctgacac aggacacagc aatcaggtca 720 gccaaaatta ccctatagtg cagaacatcc aggggcaaat ggtacatcag gccatatcac 780 ctagaacttt aaatgcatgg gtaaaagtag tagaagagaa ggctttcagc ccagaagtga 840 tacccatgtt ttcagcatta tcagaaggag ccaccccaca agatttaaac accatgctaa 900 acacagtggg gggacatcaa gcagccatgc aaatgttaaa agagaccatc aatgaggaag 960 ctgcagaatg ggatagagtg catccagtgc atgcagggcc tattgcacca ggccagatga 1020 gagaaccaag gggaagtgac atagcaggaa ctactagtac ccttcaggaa caaataggat 1080 ggatgacaaa taatccacct atcccagtag gagaaattta taaaagatgg ataatcctgg 1140 gattaaataa aatagtaaga atgtatagcc ctaccagcat tctggacata agacaaggac 1200 caaaggaacc ctttagagac tatgtagacc ggttctataa aactctaaga gccgagcaag 1260 cttcacagga ggtaaaaaat tggatgacag aaaccttgtt ggtccaaaat gcgaacccag 1320 attgtaagac tattttaaaa gcattgggac cagcggctac actagaagaa atgatgacag 1380 catgtcaggg agtaggagga cccggccata aggcaagagt tttggctgaa gcaatgagcc 1440 aagtaacaaa ttcagctacc ataatgatgc agagaggcaa ttttaggaac caaagaaaga 1500 ttgttaagtg tttcaattgt ggcaaagaag ggcacacagc cagaaattgc agggccccta 1560 ggaaaaaggg ctgttggaaa tgtggaaagg aaggacacca aatgaaagat tgtactgaga 1620 gacaggctaa ttttttaggg aagatctggc cttcctacaa gggaaggcca gggaattttc 1680 ttcagagcag accagagcca acagccccac cagaagagag cttcaggtct ggggtagaga 1740 caacaactcc ccctcagaag caggagccga tagacaagga actgtatcct ttaacttccc 1800 tcaggtcact ctttggcaac gacccctcgt cacaataaag ataggggggc aactaaagga 1860 agctctatta gatacaggag cagatgatac agtattagaa gaaatgagtt tgccaggaag 1920 atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac agtatgatca 1980 gatactcata gaaatctgtg gacataaagc tataggtaca gtattagtag gacctacacc 2040 tgtcaacata attggaagaa atctgttgac tcagattggt tgcactttaa attttcccat 2100 tagccctatt gagactgtac cagtaaaatt aaagccagga atggatggcc caaaagttaa 2160 acaatggcca ttgacagaag aaaaaataaa agcattagta gaaatttgta cagagatgga 2220 aaaggaaggg aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc 2280 cataaagaaa aaagacagta ctaaatggag aaaattagta gatttcagag aacttaataa 2340 gagaactcaa gacttctggg aagttcaatt aggaatacca catcccgcag ggttaaaaaa 2400 gaaaaaatca gtaacagtac tggatgtggg tgatgcatat ttttcagttc ccttagatga 2460 agacttcagg aagtatactg catttaccat acctagtata aacaatgaga caccagggat 2520 tagatatcag tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tattccaaag 2580 tagcatgaca aaaatcttag agccttttag aaaacaaaat ccagacatag ttatctatca 2640 atacatggat gatttgtatg taggatctga cttagaaata gggcagcata gaacaaaaat 2700 agaggagctg agacaacatc tgttgaggtg gggacttacc acaccagaca aaaaacatca 2760 gaaagaacct ccattccttt ggatgggtta tgaactccat cctgataaat ggacagtaca 2820 gcctatagtg ctgccagaaa aagacagctg gactgtcaat gacatacaga agttagtggg 2880 gaaattgaat tgggcaagtc agatttaccc agggattaaa gtaaggcaat tatgtaaact 2940 ccttagagga accaaagcac taacagaagt aataccacta acagaagaag cagagctaga 3000 actggcagaa aacagagaga ttctaaaaga accagtacat ggagtgtatt atgacccatc 3060 aaaagactta atagcagaaa tacagaagca ggggcaaggc caatggacat atcaaattta 3120 tcaagagcca tttaaaaatc tgaaaacagg aaaatatgca agaatgaggg gtgcccacac 3180 taatgatgta aaacaattaa cagaggcagt gcaaaaaata accacagaaa gcatagtaat 3240 atggggaaag actcctaaat ttaaactgcc catacaaaag gaaacatggg aaacatggtg 3300 gacagagtat tggcaagcca cctggattcc tgagtgggag tttgttaata cccctccctt 3360 agtgaaatta tggtaccagt tagagaaaga acccatagta ggagcagaaa ccttctatgt 3420 agatggggca gctaacaggg agactaaatt aggaaaagca ggatatgtta ctaatagagg 3480 aagacaaaaa gttgtcaccc taactgacac aacaaatcag aagactgagt tacaagcaat 3540 ttatctagct ttgcaggatt cgggattaga agtaaacata gtaacagact cacaatatgc 3600 attaggaatc attcaagcac aaccagatca aagtgaatca gagttagtca atcaaataat 3660 agagcagtta ataaaaaagg aaaaggtcta tctggcatgg gtaccagcac acaaaggaat 3720 tggaggaaat gaacaagtag ataaattagt cagtgctgga atcaggaaag tactattttt 3780 agatggaata gataaggccc aagatgaaca tgagaaatat cacagtaatt ggagagcaat 3840 ggctagtgat tttaacctgc cacctgtagt agcaaaagaa atagtagcca gctgtgataa 3900 atgtcagcta aaaggagaag ccatgcatgg acaagtagac tgtagtccag gaatatggca 3960 actagattgt acacatttag aaggaaaagt tatcctggta gcagttcatg tagccagtgg 4020 atatatagaa gcagaagtta ttccagcaga aacagggcag gaaacagcat attttctttt 4080 aaaattagca ggaagatggc cagtaaaaac aatacatact gacaatggca gcaatttcac 4140 cggtgctacg gttagggccg cctgttggtg ggcgggaatc aagcaggaat ttggaattcc 4200 ctacaatccc caaagtcaag gagtagtaga atctatgaat aaagaattaa agaaaattat 4260 aggacaggta agagatcagg ctgaacatct taagacagca gtacaaatgg cagtattcat 4320 ccacaatttt aaaagaaaag gggggattgg ggggtacagt gcaggggaaa gaatagtaga 4380 cataatagca acagacatac aaactaaaga attacaaaaa caaattacaa aaattcaaaa 4440 ttttcgggtt tattacaggg acagcagaaa tccactttgg aaaggaccag caaagctcct 4500 ctggaaaggt gaaggggcag tagtaataca agataatagt gacataaaag tagtgccaag 4560 aagaaaagca aagatcatta gggattatgg aaaacagatg gcaggtgatg attgtgtggc 4620 aagtagacag gatgaggatt agaacatgga aaagtttagt aaaacaccat atgtatgttt 4680 cagggaaagc taggggatgg ttttatagac atcactatga aagccctcat ccaagaataa 4740 gttcagaagt acacatccca ctaggggatg ctagattggt aataacaaca tattggggtc 4800 tgcatacagg agaaagagac tggcatttgg gtcagggagt ctccatagaa tggaggaaaa 4860 agagatatag cacacaagta gaccctgaac tagcagacca actaattcat ctgtattact 4920 ttgactgttt ttcagactct gctataagaa aggccttatt aggacacata gttagcccta 4980 ggtgtgaata tcaagcagga cataacaagg taggatctct acaatacttg gcactagcag 5040 cattaataac accaaaaaag ataaagccac ctttgcctag tgttacgaaa ctgacagagg 5100 atagatggaa caagccccag aagaccaagg gccacagagg gagccacaca atgaatggac 5160 actagagctt ttagaggagc ttaagaatga agctgttaga cattttccta ggatttggct 5220 ccatggctta gggcaacata tctatgaaac ttatggggat acttgggcag gagtggaagc 5280 cataataaga attctgcaac aactgctgtt tatccatttt cagaattggg tgtcgacata 5340 gcagaatagg cgttactcga cagaggagag caagaaatgg agccagtaga tcctagacta 5400 gagccctgga agcatccagg aagtcagcct aaaactgctt gtaccaattg ctattgtaaa 5460 aagtgttgct ttcattgcca agtttgtttc ataacaaaag ccttaggcat ctcctatggc 5520 aggaagaagc ggagacagcg acgaagagct catcagaaca gtcagactca tcaagcttct 5580 ctatcaaagc agtaagtagt acatgtaatg caacctatac caatagtagc aatagtagca 5640 ttagtagtag caataataat agcaatagtt gtgtggtcca tagtaatcat agaatatagg 5700 aaaatattaa gacaaagaaa aatagacagg ttaattgata gactaataga aagagcagaa 5760 gacagtggca atgagagtga aggagaaata tcagcacttg tggagatggg ggtggagatg 5820 gggcaccatg ctccttggga tgttgatgat ctgtagtgct acagaaaaat tgtgggtcac 5880 agtctattat ggggtacctg tgtggaagga agcaaccacc actctatttt gtgcatcaga 5940 tgctaaagca tatgatacag aggtacataa tgtttgggcc acacatgcct gtgtacccac 6000 agaccccaac ccacaagaag tagtattggt aaatgtgaca gaaaatttta acatgtggaa 6060 aaatgacatg gtagaacaga tgcatgagga tataatcagt ttatgggatc aaagcctaaa 6120 gccatgtgta aaattaaccc cactctgtgt tagtttaaag tgcactgatt tgaagaatga 6180 tactaatacc aatagtagta gcgggagaat gataatggag aaaggagaga taaaaaactg 6240 ctctttcaat atcagcacaa gcataagagg taaggtgcag aaagaatatg cattttttta 6300 taaacttgat ataataccaa tagataatga tactaccagc tataagttga caagttgtaa 6360 cacctcagtc attacacagg cctgtccaaa ggtatccttt gagccaattc ccatacatta 6420 ttgtgccccg gctggttttg cgattctaaa atgtaataat aagacgttca atggaacagg 6480 accatgtaca aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac 6540 tcaactgctg ttaaatggca gtctagcaga agaagaggta gtaattagat ctgtcaattt 6600 cacggacaat gctaaaacca taatagtaca gctgaacaca tctgtagaaa ttaattgtac 6660 aagacccaac aacaatacaa gaaaaagaat ccgtatccag agaggaccag ggagagcatt 6720 tgttacaata ggaaaaatag gaaatatgag acaagcacat tgtaacatta gtagagcaaa 6780 atggaataac actttaaaac agatagctag caaattaaga gaacaatttg gaaataataa 6840 aacaataatc tttaagcaat cctcaggagg ggacccagaa attgtaacgc acagttttaa 6900 ttgtggaggg gaatttttct actgtaattc aacacaactg tttaatagta cttggtttaa 6960 tagtacttgg agtactgaag ggtcaaataa cactgaagga agtgacacaa tcaccctccc 7020 atgcagaata aaacaaatta taaacatgtg gcagaaagta ggaaaagcaa tgtatgcccc 7080 tcccatcagt ggacaaatta gatgttcatc aaatattaca gggctgctat taacaagaga 7140 tggtggtaat agcaacaatg agtccgagat cttcagacct ggaggaggag atatgaggga 7200 caattggaga agtgaattat ataaatataa agtagtaaaa attgaaccat taggagtagc 7260 acccaccaag gcaaagagaa gagtggtgca gagagaaaaa agagcagtgg gaataggagc 7320 tttgttcctt gggttcttgg gagcagcagg aagcactatg ggcgcagcct caatgacgct 7380 gacggtacag gccagacaat tattgtctgg tatagtgcag cagcagaaca atttgctgag 7440 ggctattgag gcgcaacagc atctgttgca actcacagtc tggggcatca agcagctcca 7500 ggcaagaatc ctggctgtgg aaagatacct aaaggatcaa cagctcctgg ggatttgggg 7560 ttgctctgga aaactcattt gcaccactgc tgtgccttgg aatgctagtt ggagtaataa 7620 atctctggaa cagatttgga atcacacgac ctggatggag tgggacagag aaattaacaa 7680 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 7740 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 7800 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 7860 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 7920 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 7980 tggagagaga gacagagaca gatccattcg attagtgaac ggatccttgg cacttatctg 8040 ggacgatctg cggagcctgt gcctcttcag ctaccaccgc ttgagagact tactcttgat 8100 tgtaacgagg attgtggaac ttctgggacg cagggggtgg gaagccctca aatattggtg 8160 gaatctccta cagtattgga gtcaggaact aaagaatagt gctgttagct tgctcaatgc 8220 cacagccata gcagtagctg aggggacaga tagggttata gaagtagtac aaggagcttg 8280 tagagctatt cgccacatac ctagaagaat aagacagggc ttggaaagga ttttgctata 8340 agatgggtgg caagtggtca aaaagtagtg tgattggatg gcctactgta agggaaagaa 8400 tgagacgagc tgagccagca gcagataggg tgggagcagc atctcgagac ctggaaaaac 8460 atggagcaat cacaagtagc aatacagcag ctaccaatgc tgcttgtgcc tggctagaag 8520 cacaagagga ggaggaggtg ggttttccag tcacacctca ggtaccttta agaccaatga 8580 cttacaaggc agctgtagat cttagccact ttttaaaaga aaagggggga ctggaagggc 8640 taattcactc ccaaagaaga caagatatcc ttgatctgtg gatctaccac acacaaggct 8700 acttccctga ttagcagaac tacacaccag ggccaggggt cagatatcca ctgacctttg 8760 gatggtgcta caagctagta ccagttgagc cagataagat agaagaggcc aataaaggag 8820 agaacaccag cttgttacac cctgtgagcc tgcatgggat ggatgacccg gagagagaag 8880 tgttagagtg gaggtttgac agccgcctag catttcatca cgtggcccga gagctgcatc 8940 cggagtactt caagaactgc tgacatcgag cttgctacaa gggactttcc gctggggact 9000 ttccagggag gcgtggcctg ggcgggactg gggagtggcg agccctcaga tcctgcatat 9060 aagcagctgc tttttgcctg tactgggtct ctctggttag accagatctg agcctgggag 9120 ctctctggct aactagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt 9180 c 9181 //